Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138453.14 - phase: 0 
         (1715 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644690 weakly similar to GP|18542179|gb putative pol protein {...   197  1e-68
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2...   199  6e-51
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid...   185  1e-46
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi...   178  1e-44
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported...   166  7e-41
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2...   156  7e-38
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr...   140  4e-33
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate...    81  4e-29
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret...   122  9e-28
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot...   117  4e-26
BI262917 weakly similar to GP|19920130|g Putative retroelement {...   102  2e-22
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen...   105  2e-22
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu...    92  2e-18
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ...    89  2e-17
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati...    81  3e-15
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p...    80  9e-15
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p...    68  3e-11
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T...    67  6e-11
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia...    60  6e-09
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po...    59  1e-08

>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
            partial (22%)
          Length = 629

 Score =  197 bits (501), Expect(2) = 1e-68
 Identities = 90/141 (63%), Positives = 121/141 (84%)
 Frame = -2

Query: 1265 VTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVESAFLNG 1324
            +TRNK++LV QGY+Q+EGIDY E F+PVAR+EAIR+L+++A   G  LYQMDV+SAF+NG
Sbjct: 424  ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245

Query: 1325 VIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDT 1384
             ++EEV+VKQPPGFED + P+HV++L K+LYGLKQAPRAWY+RLS FL+KN F+RG++D 
Sbjct: 244  DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65

Query: 1385 TLFRRTLKKDILIVQIYVDDI 1405
            TLF    + ++LI+Q+YVDDI
Sbjct: 64   TLFLLKRE*ELLIIQVYVDDI 2



 Score = 82.8 bits (203), Expect(2) = 1e-68
 Identities = 38/62 (61%), Positives = 47/62 (75%)
 Frame = -3

Query: 1198 SLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRN 1257
            S    +S IEPK V+EAL D  WI +MQEEL+QF+R+ VW LVP+P  K +IGT+WVFRN
Sbjct: 615  SFSAFISSIEPKNVKEALRDADWINSMQEELHQFERSKVWYLVPRPEGKTVIGTRWVFRN 436

Query: 1258 KL 1259
            KL
Sbjct: 435  KL 430


>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
            Arabidopsis thaliana, partial (11%)
          Length = 732

 Score =  199 bits (507), Expect = 6e-51
 Identities = 93/217 (42%), Positives = 143/217 (65%), Gaps = 1/217 (0%)
 Frame = +1

Query: 1440 IQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGM 1499
            +++ Q++EG+Y+ Q KY  +LL++F +E   +   P+ P C L K++ G  VD   Y+ +
Sbjct: 1    VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180

Query: 1500 IGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1559
            +G L+YL A+RPD+++ + L +RF + P E H+ AVKR+ RYL GT NLG++Y+++   K
Sbjct: 181  VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360

Query: 1560 LIGFCDADYAGDRIERKSTSENCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQL 1619
            L  + D+DYAGD  +RKSTS     L    +SW+SK+Q  + +ST +AE+I+AA C  Q 
Sbjct: 361  LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540

Query: 1620 LWMKHQLEDY-QINANSIPIYCDNTAAICLSKNPILH 1655
            +WM+  LE      + SI +YCDN + I LSKNP+LH
Sbjct: 541  VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651


>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
            thaliana}, partial (14%)
          Length = 778

 Score =  185 bits (470), Expect = 1e-46
 Identities = 97/257 (37%), Positives = 159/257 (61%), Gaps = 5/257 (1%)
 Frame = +3

Query: 1200 IGLLSII-EPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNK 1258
            +G+L++  +P T EEA+  + W  +M  E+   +RN+ W+L    S    IG KW+F+ K
Sbjct: 15   LGMLTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTK 194

Query: 1259 LNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAI---NHGIILYQM 1315
            LNE GE+ + KARLVA+GYSQQ G+DYTE FAPVAR + IR++++ A      G+ +  M
Sbjct: 195  LNENGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQIKRDGVCIS*M 374

Query: 1316 DVESAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKN 1375
                + +   + + + +        +       ++K++LYGLKQAPRAWY R+  +  K 
Sbjct: 375  *KAHSCMEN*MRKFLLINH----RVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKE 542

Query: 1376 DFERGQVDTTLFRRTLK-KDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGEL 1434
             FE+   + TLF +  +   ILI+ +YVDD+IF   + ++ +EF K M+ EF MS +G++
Sbjct: 543  GFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKM 722

Query: 1435 KFFLGIQINQSKEGVYV 1451
             +FLG+++ Q+++G+Y+
Sbjct: 723  HYFLGVEVTQNEKGIYI 773


>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
            partial (9%)
          Length = 675

 Score =  178 bits (452), Expect = 1e-44
 Identities = 95/199 (47%), Positives = 126/199 (62%)
 Frame = +1

Query: 1215 LSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVA 1274
            LSD  W+ AM+ E      N  WDLVP P  K  IG KWV+R K N  G V + KARLVA
Sbjct: 82   LSDPRWLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVA 261

Query: 1275 QGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVESAFLNGVIEEEVYVKQ 1334
            +G+SQ  G DYTETF+PV +   IRL+L+ AI +   + Q+D+ +AFLNG ++EEVY+ Q
Sbjct: 262  KGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQ 441

Query: 1335 PPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKD 1394
            P GFE   +   V KL KSLYGLKQAPRAWY+ L++  I+  F + + D +L        
Sbjct: 442  PQGFE-AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGA 618

Query: 1395 ILIVQIYVDDIIFGSTNAS 1413
             + + IYVDDI+   ++AS
Sbjct: 619  CIYLXIYVDDILITGSSAS 675


>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
            Arabidopsis thaliana, partial (17%)
          Length = 618

 Score =  166 bits (420), Expect = 7e-41
 Identities = 82/183 (44%), Positives = 116/183 (62%)
 Frame = -1

Query: 1208 PKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTR 1267
            P++ EEA+ D  W  ++  E     +ND W     P  K  + ++W+F  K    G + R
Sbjct: 558  PRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIFTIKYKADGSIER 379

Query: 1268 NKARLVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVESAFLNGVIE 1327
             K RLVA+G++   G DY ETFAPVA+L  IR++LS A+N G  L+QMDV++AFL G +E
Sbjct: 378  KKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELE 199

Query: 1328 EEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLF 1387
            +EVY+  PPG E L    +V +LKK++YGLKQ+PRAWY++LS  L    F + ++D TLF
Sbjct: 198  DEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLF 19

Query: 1388 RRT 1390
              T
Sbjct: 18   TLT 10


>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
            [imported] - Arabidopsis thaliana, partial (10%)
          Length = 744

 Score =  156 bits (394), Expect = 7e-38
 Identities = 87/240 (36%), Positives = 133/240 (55%)
 Frame = +2

Query: 1347 VYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDII 1406
            V +L+KS+YGLKQA R WY +LS  LI   + +   D +LF +        + +YVDDI+
Sbjct: 20   VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199

Query: 1407 FGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKL 1466
                + S  +     + D F++  +G L++FLG+++ +SK+G+ ++Q KYT ELL+    
Sbjct: 200  LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379

Query: 1467 EDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSD 1526
               K   TP   +  L   D+    D+  YR +IG L+YLT +RPDI F+V   ++F S 
Sbjct: 380  LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559

Query: 1527 PRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSENCQFLG 1586
            P++ H  A  R+ +YLK     GL Y  + + KL  F D+D+A     RKS +    FLG
Sbjct: 560  PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739


>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
            sativa}, partial (9%)
          Length = 542

 Score =  140 bits (353), Expect = 4e-33
 Identities = 72/146 (49%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
 Frame = +2

Query: 1566 ADYAGDRIERKSTSENCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQ 1625
            +D+AGD   RKSTS     LG   ISW+SK+Q  +A STAEAEYI++ SC TQ +W++  
Sbjct: 2    SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181

Query: 1626 LEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDT 1684
            LE      N+   IYCDN +AI LSKNP+ H R+KHI+I+ H IR+ + +  + I++  T
Sbjct: 182  LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361

Query: 1685 EHQWADIFTKPLSVERFDFIKKNLNM 1710
            E + ADIFTKPL +E F  +KK L M
Sbjct: 362  EEKIADIFTKPLKIESFYKLKKMLGM 439


>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
            polyprotein from transposon TNT 1-94 [Contains: Protease
            (EC 3.4.23.-);, partial (7%)
          Length = 705

 Score = 81.3 bits (199), Expect(2) = 4e-29
 Identities = 33/100 (33%), Positives = 61/100 (61%)
 Frame = +3

Query: 1611 SAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRD 1670
            S    C + +WM+  +E+       I +YCD+ +A+ +++NP  HSR KHI I++HF+R+
Sbjct: 228  SLPQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVRE 407

Query: 1671 YVQKGILDIQFIDTEHQWADIFTKPLSVERFDFIKKNLNM 1710
             V++G +D+Q I T    AD  TK ++ ++F + + +  +
Sbjct: 408  VVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGL 527



 Score = 67.0 bits (162), Expect(2) = 4e-29
 Identities = 34/78 (43%), Positives = 51/78 (64%)
 Frame = +1

Query: 1535 VKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSENCQFLGENLISWAS 1594
            VKRI RY+KGT+ + + +  S +  + G+ D+D+AGD  +RKST+     L    +SW S
Sbjct: 1    VKRIMRYIKGTSGVAVCFGGS-ELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177

Query: 1595 KRQATIAMSTAEAEYISA 1612
            K Q  +A+ST EAEY++A
Sbjct: 178  KLQTVVALSTTEAEYMAA 231


>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
            {Oryza sativa} [Oryza sativa (japonica cultivar-group)],
            partial (10%)
          Length = 823

 Score =  122 bits (307), Expect = 9e-28
 Identities = 71/214 (33%), Positives = 109/214 (50%), Gaps = 2/214 (0%)
 Frame = +1

Query: 860  LELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEK 919
            L+ +H DL+GP    S  G +Y + I+DD+ R  WV F++ K+     F  +   ++++ 
Sbjct: 97   LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 276

Query: 920  ELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMI 979
               + K+ +D+  EF +  F  FC  HGI    + PR PQQNGV ER  RTL E AR M+
Sbjct: 277  GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 456

Query: 980  HENNL--AKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYIL 1037
                L   +  W EA +T+C++ NR     +  K   +++ G   + S    FGC  Y L
Sbjct: 457  SNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYAL 636

Query: 1038 NTKDYLKKFDAKAQRGIFLGYSERSKAYKVYNSE 1071
                   K   +A   IFL Y+  SK Y+++ S+
Sbjct: 637  VNDG---KLAPRAGECIFLSYASESKGYRLWCSD 729


>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein [imported]
            - Arabidopsis thaliana, partial (13%)
          Length = 718

 Score =  117 bits (293), Expect = 4e-26
 Identities = 82/247 (33%), Positives = 129/247 (52%)
 Frame = -3

Query: 757  VNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKIS 816
            V K D  +  K   V N YK +F+  +        S+N K  +WH RLGH + R ++ + 
Sbjct: 680  VTKGDLYMLEKLDPVSN-YKCSFTSSS--------SLN-KDALWHARLGHPHGRALNLM- 534

Query: 817  KLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASL 876
                   LP + + +   C AC  GK  K+ F     V  +   +L++ DL+    + S 
Sbjct: 533  -------LPGVVFENKN-CEACILGKHCKNVFPRTSTVYENC-FDLIYTDLW-TAPSLSR 384

Query: 877  YGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFEN 936
               KY +  +D+ S++TW+  I SKD   + F +F   + +    KI  +RSD+GGE+ +
Sbjct: 383  DNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTS 204

Query: 937  EPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTS 996
              F+   + HGILH+ S P TPQQNGV +RKN+ L E+AR+++ + N         V+T+
Sbjct: 203  YAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTA 51

Query: 997  CYIQNRI 1003
            CY+ N I
Sbjct: 50   CYLINWI 30


>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza sativa}
            [Oryza sativa (japonica cultivar-group)], partial (8%)
          Length = 426

 Score =  102 bits (254), Expect(2) = 2e-22
 Identities = 50/113 (44%), Positives = 69/113 (60%)
 Frame = +1

Query: 957  TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYEL 1016
            TPQQNGV ER NRTL E  R M+    +AK FWAEAV T+CY+ NR     +  KT  E+
Sbjct: 85   TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264

Query: 1017 FKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYKVYN 1069
            +KG+  + S  H FGC  Y++       K D K+++ IFLGY++  K Y +++
Sbjct: 265  WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423



 Score = 23.5 bits (49), Expect(2) = 2e-22
 Identities = 8/22 (36%), Positives = 15/22 (67%)
 Frame = +3

Query: 932 GEFENEPFELFCEKHGILHEFS 953
           GE+ +  F  FC++ GI+ +F+
Sbjct: 9   GEYVDGEFLAFCKQEGIVRQFT 74


>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (10%)
          Length = 814

 Score =  105 bits (261), Expect = 2e-22
 Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 2/163 (1%)
 Frame = +1

Query: 1534 AVKRIFRYLKGTTNLGLLYRKSLDYK--LIGFCDADYAGDRIERKSTSENCQFLGENLIS 1591
            A+K + +YL  +    L Y K+   +  L G+ DADYAG+   RKS S     L    IS
Sbjct: 4    ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183

Query: 1592 WASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKN 1651
            W + +Q+ + +ST +AEYI+        +W+K  + +  I    + I+CD+ +AI L+ +
Sbjct: 184  WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363

Query: 1652 PILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTK 1694
             + H R KHI+I+ HFIRD ++   + ++ + +E   AD+FTK
Sbjct: 364  QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492


>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
            partial (13%)
          Length = 494

 Score = 92.0 bits (227), Expect = 2e-18
 Identities = 50/122 (40%), Positives = 73/122 (58%), Gaps = 3/122 (2%)
 Frame = +1

Query: 1510 RPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLY---RKSLDYKLIGFCDA 1566
            RPDI +SV + ++F  DPR+ HL A  RI RY++GT   GLL+    KS  Y+LI + D+
Sbjct: 121  RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300

Query: 1567 DYAGDRIERKSTSENCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQL 1626
            D+ GD   R+STS       +  ISW +K+Q   A+S+ EAEYI+      Q LW+   +
Sbjct: 301  DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471

Query: 1627 ED 1628
            ++
Sbjct: 472  KE 477


>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (7%)
          Length = 763

 Score = 88.6 bits (218), Expect = 2e-17
 Identities = 43/86 (50%), Positives = 61/86 (70%)
 Frame = +2

Query: 1239 LVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVARLEAI 1298
            LV KP+    IG +W+++ K NE G + + KARLVA+GY +Q+GID+ E FAPV R+E I
Sbjct: 65   LVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPVVRIETI 244

Query: 1299 RLLLSYAINHGIILYQMDVESAFLNG 1324
             LLL+ A  +G  ++ +DV+ AFLNG
Sbjct: 245  *LLLALAATNGC*IHHIDVKIAFLNG 322


>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
            cultivar-group)}, partial (8%)
          Length = 503

 Score = 81.3 bits (199), Expect = 3e-15
 Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
 Frame = +1

Query: 1359 QAPRAWYDRLSNFLIKNDFERGQVDTTLFRR---TLKKDILIVQIYVDDIIFGSTNASLC 1415
            Q+PR W+DR +  + K  + + Q D  +F +   T+KK ILIV  YVDDI     +    
Sbjct: 1    QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174

Query: 1416 KEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1475
            K    L+ +EFE+  +G LK+FLG+++ + K+G  + Q KY  +LLK+ ++  CK +  P
Sbjct: 175  KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354

Query: 1476 MHPTC 1480
                C
Sbjct: 355  YGCNC 369



 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 25/56 (44%), Positives = 35/56 (61%)
 Frame = +2

Query: 1468 DCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARF 1523
            D K   TPM  T  L   D GT+VD+  Y+ ++G L+YL+ +RPDI F VC  ++F
Sbjct: 332  DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499


>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
            [imported] - Arabidopsis thaliana, partial (7%)
          Length = 705

 Score = 79.7 bits (195), Expect = 9e-15
 Identities = 45/163 (27%), Positives = 79/163 (47%), Gaps = 12/163 (7%)
 Frame = -2

Query: 996  SCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIF 1055
            +CY+ NRI  R + ++  +E+   R+P+++Y   FGC CY+L   +   K +A++++ +F
Sbjct: 704  ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525

Query: 1056 LGYSERSKAYKVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDA------- 1108
            +GYS   K YK Y+ E + V  S  VKF +     +   Q +    T+D           
Sbjct: 524  IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLTSDKAGVLRVILEG 345

Query: 1109 ----SESDQPSDSKKYTEVESSP-EAEITPEAESNSEAEPSSK 1146
                   DQ + S++  E  + P  A  TP  +    +EP ++
Sbjct: 344  LGIKMNQDQSTRSRQPEESSNEPRRAAQTPHLDHEGGSEPETQ 216


>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
            [imported] - Arabidopsis thaliana, partial (4%)
          Length = 480

 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 32/71 (45%), Positives = 43/71 (60%)
 Frame = +2

Query: 1640 CDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDTEHQWADIFTKPLSVE 1699
            CD  +A  L+ NP+ HSR KHI I  HF+RD VQ+G L +Q + T  Q AD  TKPLS  
Sbjct: 29   CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208

Query: 1700 RFDFIKKNLNM 1710
            R   ++  + +
Sbjct: 209  RHQLLRNKIGV 241


>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
            {Arabidopsis thaliana}, partial (3%)
          Length = 539

 Score = 67.0 bits (162), Expect = 6e-11
 Identities = 38/104 (36%), Positives = 56/104 (53%)
 Frame = -3

Query: 1504 LYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGF 1563
            + LT   P+I FS+ L +R+ S P   H   +K I +YLKG  ++GL Y K     LIG+
Sbjct: 531  ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352

Query: 1564 CDADYAGDRIERKSTSENCQFLGENLISWASKRQATIAMSTAEA 1607
             +A Y  D  + +S +      G  +ISW S + +TIA S+  A
Sbjct: 351  VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220


>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
            partial (7%)
          Length = 780

 Score = 60.5 bits (145), Expect = 6e-09
 Identities = 37/96 (38%), Positives = 52/96 (53%)
 Frame = -2

Query: 1289 FAPVARLEAIRLLLSYAINHGIILYQMDVESAFLNGVIEEEVYVKQPPGFEDLKHPDHVY 1348
            F P+ +L  I  LLS      + L  +DV++AFL G + E++Y+ QP GF   +    V 
Sbjct: 554  FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF-S*EVGKMVG 378

Query: 1349 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDT 1384
            KLKKS+YGLKQ PR     L     +  F R ++ T
Sbjct: 377  KLKKSMYGLKQGPRQCI*SLKALCTRKGF-RSEIST 273


>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
            {Oryza sativa}, partial (1%)
          Length = 638

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 7/203 (3%)
 Frame = +2

Query: 1122 EVESSPEAEITPEAESNSEAEPSSKVQNEIASEDFLDNTQQVIQPKFKHKSSHPEELIIG 1181
            +VE+S   EI  + +S+ E +  S    EI  + F + TQ     K K   SH   L+  
Sbjct: 26   QVEASDLEEIQEDFKSHGEVQEESNYIEEI--KGFQEPTQL---RKIKE*ESH---LVTL 181

Query: 1182 SKDSPRRTRSHF-------RQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRN 1234
            +  S      H+       +   SL  + S IEPK   +A     W+ AM++E+   + N
Sbjct: 182  NSSSKSYHIFHYVGYSFSAKHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQVLEEN 361

Query: 1235 DVWDLVPKPSQKNIIGTKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGIDYTETFAPVAR 1294
            +   L P    K  +  + V++      GE+ + KA+LVA+ + Q EG D+ +      +
Sbjct: 362  NTSTLEPLREGKKWVDCRPVYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LCLSNK 538

Query: 1295 LEAIRLLLSYAINHGIILYQMDV 1317
             +  R LL+ A   G  L+ MDV
Sbjct: 539  DDNCRCLLTIAAAKG*QLHLMDV 607


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.314    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,565,075
Number of Sequences: 36976
Number of extensions: 678561
Number of successful extensions: 3198
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 3070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3175
length of query: 1715
length of database: 9,014,727
effective HSP length: 110
effective length of query: 1605
effective length of database: 4,947,367
effective search space: 7940524035
effective search space used: 7940524035
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)


Medicago: description of AC138453.14