BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138452.7 + phase: 0 /pseudo
(677 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB892335 similar to GP|7715599|gb| F20B17.17 {Arabidopsis thalia... 121 8e-28
TC90728 similar to GP|7715599|gb|AAF68117.1| F20B17.17 {Arabidop... 79 6e-15
AL370071 similar to GP|15795135|dbj transposase-like protein {Ar... 73 3e-13
BG584059 similar to GP|12722947|gb| UNKNOWN PROTEIN {Lactococcus... 69 5e-12
TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein ai... 32 0.80
TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed pr... 31 1.4
BF641220 weakly similar to PIR|G86203|G86 probable N-arginine di... 31 1.4
TC82359 weakly similar to GP|22655127|gb|AAM98154.1 putative pro... 31 1.8
TC93070 weakly similar to GP|17065230|gb|AAL32769.1 Unknown prot... 30 2.3
TC77438 homologue to PIR|T06807|T06807 nucleosome assembly prote... 30 2.3
TC89430 similar to SP|P46573|APKB_ARATH Protein kinase APK1B (EC... 30 2.3
TC80247 similar to PIR|C86476|C86476 protein F15O4.45 [imported]... 30 2.3
TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome... 30 2.3
TC90331 weakly similar to GP|21751020|dbj|BAC03887. unnamed prot... 30 3.0
TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {... 30 3.0
BQ147264 similar to GP|21805715|gb| hypothetical protein {Arabid... 30 3.0
CA859018 similar to GP|6573149|gb|A growth-regulating factor 1 {... 30 4.0
TC76936 similar to GP|20160782|dbj|BAB89723. putative nascent po... 30 4.0
TC86645 similar to PIR|H86321|H86321 hypothetical protein AAF271... 29 5.2
TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Atel... 29 5.2
>CB892335 similar to GP|7715599|gb| F20B17.17 {Arabidopsis thaliana}, partial
(27%)
Length = 788
Score = 121 bits (304), Expect = 8e-28
Identities = 61/178 (34%), Positives = 96/178 (53%)
Frame = +2
Query: 178 RLLLSFFYNNAISFNVARSDEYLKMFELVAKHGIGFKPLSYDEIRNKYLNYFYGEIGKDL 237
R + FF+ N + F+VARS Y M + + K G GF S + ++ +L E+G
Sbjct: 254 RSIALFFFENKLDFSVARSSSYQLMIDAITKCGPGFTGPSAEILKTIWLERIKSEVGLQS 433
Query: 238 EAHRAVWEKCGCIIMTDGWTDRRRRTILNFLVHSPKGTFFLKSIDPSDITKTADKIFKMI 297
+ W GC I+ D WTD + + I+NFLV SP FF KS+D S K + +
Sbjct: 434 KDVEKEWATTGCTIIADTWTDYKSKAIINFLVSSPSRIFFHKSVDASAYFKNTKWLADLF 613
Query: 298 DDVVEEIGEENVVQVVTDNAANYKAAGELLMEKRPHLYWTPCAAHCIDLMLEDFEKKI 355
D V++E G ENVVQ++ D++ NY G +++ ++ +PCA+ ++L+ D K I
Sbjct: 614 DSVIQEFGPENVVQIIMDSSFNYTGIGNHIVQNYGTIFVSPCASQWLNLIFGDSPKMI 787
>TC90728 similar to GP|7715599|gb|AAF68117.1| F20B17.17 {Arabidopsis
thaliana}, partial (58%)
Length = 1171
Score = 79.0 bits (193), Expect = 6e-15
Identities = 51/164 (31%), Positives = 79/164 (48%), Gaps = 1/164 (0%)
Frame = +3
Query: 401 TSYLTLGCLNEHQNQLIDLFKSNEWKTSKLAKSKDGKIVQNVVLSKV-FWKDVLNCLRGA 459
+++L+L + + + +L +F S E+ +K + + FW+ V C+ +
Sbjct: 12 STFLSLQTMLKLRTRLKHMFHSPEYALDTSYANKPQSLSCIAIAEDGDFWRTVEECVAIS 191
Query: 460 FPLVKVLCMVDWEEKAAMGYIYEEMDRAKEKIRTNFSGQARSYNPIWKIIDDRWDRQLHR 519
P +KVL V E K +G IYE M RAKE IRT + I+D +W QLH
Sbjct: 192 EPFLKVLREVS-EGKPTVGSIYELMTRAKESIRTYYIMDENKCKTFLDIVDKKWRDQLHS 368
Query: 520 PLHAAGLFLNPMLRYAPNFTVDDEIVNGMYACLRRMVADAEKRK 563
PLHAA FLNP ++Y P I Y L +++ + R+
Sbjct: 369 PLHAAAAFLNPSIQYNPEIKFLSSIKEDFYHVLEKLLPVPDMRR 500
>AL370071 similar to GP|15795135|dbj transposase-like protein {Arabidopsis
thaliana}, partial (3%)
Length = 370
Score = 73.2 bits (178), Expect = 3e-13
Identities = 32/67 (47%), Positives = 43/67 (63%)
Frame = +3
Query: 498 QARSYNPIWKIIDDRWDRQLHRPLHAAGLFLNPMLRYAPNFTVDDEIVNGMYACLRRMVA 557
+ S+ + KIID+RWD+Q H PLHAAG FLN Y+P F D ++ G+ C+ RMV
Sbjct: 33 ERESFMHLQKIIDERWDKQFHSPLHAAGYFLNAQYHYSPGFRDDVKVKRGLQHCITRMVT 212
Query: 558 DAEKRKK 564
D E+R K
Sbjct: 213 DHEERSK 233
>BG584059 similar to GP|12722947|gb| UNKNOWN PROTEIN {Lactococcus lactis
subsp. lactis}, partial (9%)
Length = 838
Score = 69.3 bits (168), Expect = 5e-12
Identities = 34/63 (53%), Positives = 44/63 (68%)
Frame = -1
Query: 400 ATSYLTLGCLNEHQNQLIDLFKSNEWKTSKLAKSKDGKIVQNVVLSKVFWKDVLNCLRGA 459
AT+YLT CL+++ LI +F EWK+ KLAKSKDG IV+ V FWK+V+ C+RG
Sbjct: 796 ATTYLT*ECLHDNYRALIIMFTLKEWKSGKLAKSKDGIIVEKAVKDN-FWKNVMICMRGV 620
Query: 460 FPL 462
FPL
Sbjct: 619 FPL 611
>TC90874 similar to PIR|T52076|T52076 ABI3-interacting protein aip1 [imported]
- Arabidopsis thaliana, partial (19%)
Length = 1257
Score = 32.0 bits (71), Expect = 0.80
Identities = 16/36 (44%), Positives = 22/36 (60%)
Frame = +3
Query: 625 VNGIGVLLKGLPSIDEEGDNDDDEVEENEDEYDDDP 660
+NGI V L G P+ + D++D+E EEN D D P
Sbjct: 1110 LNGINVDLNGQPA-STDYDDEDEEEEENHDTRDSSP 1214
>TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed protein
{Arabidopsis thaliana}, partial (50%)
Length = 753
Score = 31.2 bits (69), Expect = 1.4
Identities = 13/29 (44%), Positives = 21/29 (71%)
Frame = +1
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQEFPPA 667
D++ DNDD E E+ ++E DDD ++ PP+
Sbjct: 472 DDDDDNDDGEDEDEDEEEDDD--EDQPPS 552
>BF641220 weakly similar to PIR|G86203|G86 probable N-arginine dibasic
convertase [imported] - Arabidopsis thaliana, partial
(5%)
Length = 634
Score = 31.2 bits (69), Expect = 1.4
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 637 SIDEEGDNDDDEVEENEDEYDDD 659
SIDE+ + +DDE EE+++E DD+
Sbjct: 353 SIDEDDEEEDDEDEEDDEEDDDE 421
Score = 29.3 bits (64), Expect = 5.2
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
+EE D D+++ EE++DE +DD +E
Sbjct: 371 EEEDDEDEEDDEEDDDEGEDDEDEE 445
>TC82359 weakly similar to GP|22655127|gb|AAM98154.1 putative protein
{Arabidopsis thaliana}, partial (14%)
Length = 907
Score = 30.8 bits (68), Expect = 1.8
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 506 WKIIDDRWDRQLHRPLHAAGL 526
W II RWD H PLHA L
Sbjct: 2 WNIIHQRWDSLWHHPLHACRL 64
>TC93070 weakly similar to GP|17065230|gb|AAL32769.1 Unknown protein
{Arabidopsis thaliana}, partial (19%)
Length = 679
Score = 30.4 bits (67), Expect = 2.3
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +1
Query: 639 DEEGDNDDDEVEENEDEYDDD 659
DE+ D DDD+ ++++DE DDD
Sbjct: 271 DEDEDEDDDDDDDDDDEDDDD 333
Score = 29.3 bits (64), Expect = 5.2
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +1
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
DE+ D+DDD+ +++ED+ DDD + E
Sbjct: 277 DEDEDDDDDDDDDDEDD-DDDGFAE 348
Score = 29.3 bits (64), Expect = 5.2
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = +1
Query: 635 LPSIDEEGDNDDDEVEENEDEYDDDPYQE 663
+ +D E D D+DE E+ +D+ DDD E
Sbjct: 235 IEEMDFEDDEDEDEDEDEDDDDDDDDDDE 321
>TC77438 homologue to PIR|T06807|T06807 nucleosome assembly protein 1 - garden
pea, partial (93%)
Length = 1607
Score = 30.4 bits (67), Expect = 2.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
DE+ D +DD+ +E+EDE +DD E
Sbjct: 1052 DEDDDAEDDDEDEDEDEDEDDDEDE 1126
Score = 30.0 bits (66), Expect = 3.0
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
D++ ++DD++ +E+EDE DD+ +E
Sbjct: 1058 DDDAEDDDEDEDEDEDEDDDEDEEE 1132
Score = 28.9 bits (63), Expect = 6.7
Identities = 8/22 (36%), Positives = 19/22 (86%)
Frame = +2
Query: 638 IDEEGDNDDDEVEENEDEYDDD 659
+D+E D++DD+ E+++++ D+D
Sbjct: 1034 LDDEDDDEDDDAEDDDEDEDED 1099
>TC89430 similar to SP|P46573|APKB_ARATH Protein kinase APK1B (EC 2.7.1.-).
[Mouse-ear cress] {Arabidopsis thaliana}, partial (71%)
Length = 1663
Score = 30.4 bits (67), Expect = 2.3
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 8/136 (5%)
Frame = -2
Query: 333 HLYWTPCAAHCIDLMLEDFEKKIPLHTDAISKGKTITTYIYGRTSLISL-----LHKFTN 387
HL W C+ HCI E+ +T+A G T+T + +S + L LH FT
Sbjct: 1464 HLMWGHCSLHCI-----CNEQCHVQNTEAERCGFTVTVLTWVTSSALLLRK*LWLHPFT* 1300
Query: 388 DVDSIRPAMTHFATSYLTLGCLNEHQNQLIDLFKSNE---WKTSKLAKSKDGKIVQNVVL 444
+ + +T + L L + H+ + I ++ W + +L S KI++ +
Sbjct: 1299 GICNCSKFVTTSSMFGLNLASIERHRRESIATL*ASSISYWPSRRL--SNTCKILRLLDR 1126
Query: 445 SKVFWKDVLNCLRGAF 460
+ L CL G F
Sbjct: 1125 QGLAHSTKLCCLSGLF 1078
>TC80247 similar to PIR|C86476|C86476 protein F15O4.45 [imported] -
Arabidopsis thaliana, partial (29%)
Length = 1225
Score = 30.4 bits (67), Expect = 2.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 643 DNDDDEVEENEDEYDDDPYQEFPPAM 668
D+DDD++EE E+E +D P PP +
Sbjct: 381 DHDDDDLEEKEEEEEDFPPPMTPPLL 304
>TC91658 similar to GP|14329812|emb|CAC40753. putative nucleosome assembly
protein 1 {Atropa belladonna}, partial (46%)
Length = 583
Score = 30.4 bits (67), Expect = 2.3
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +2
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
DEE D+DDD+ +++E++ DD+ E
Sbjct: 107 DEEDDDDDDDDDDDEEDEDDEEEDE 181
Score = 28.9 bits (63), Expect = 6.7
Identities = 12/27 (44%), Positives = 20/27 (73%), Gaps = 2/27 (7%)
Frame = +2
Query: 639 DEEGDN--DDDEVEENEDEYDDDPYQE 663
DE+GD DDD+ ++++DE D+D +E
Sbjct: 95 DEDGDEEDDDDDDDDDDDEEDEDDEEE 175
>TC90331 weakly similar to GP|21751020|dbj|BAC03887. unnamed protein product
{Homo sapiens}, partial (25%)
Length = 557
Score = 30.0 bits (66), Expect = 3.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Frame = -1
Query: 634 GLPSIDEEGDNDDDEVEE----NEDEYDDDPYQEFPPA 667
G ID+ +N+D E EE +ED DDD + PPA
Sbjct: 428 GAADIDDGEENEDGEEEEEEVDDEDVDDDDAQEVLPPA 315
>TC80893 similar to GP|4557063|gb|AAD22502.1| expressed protein {Arabidopsis
thaliana}, partial (39%)
Length = 883
Score = 30.0 bits (66), Expect = 3.0
Identities = 9/23 (39%), Positives = 19/23 (82%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPY 661
D+E D+DDD+V++ +D+ +++ Y
Sbjct: 327 DDEDDDDDDDVQDEDDDGEEEDY 395
Score = 28.9 bits (63), Expect = 6.7
Identities = 13/29 (44%), Positives = 19/29 (64%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQEFPPA 667
DEE + D ++ E+ EDE +DD + PPA
Sbjct: 495 DEEDEEDGEDEEDEEDEEEDDETPQ-PPA 578
>BQ147264 similar to GP|21805715|gb| hypothetical protein {Arabidopsis
thaliana}, partial (15%)
Length = 646
Score = 30.0 bits (66), Expect = 3.0
Identities = 13/42 (30%), Positives = 23/42 (53%)
Frame = +3
Query: 379 ISLLHKFTNDVDSIRPAMTHFATSYLTLGCLNEHQNQLIDLF 420
IS+LHKF+ + + THF T + +L ++ + I +F
Sbjct: 6 ISILHKFSIESQNQNQPFTHFTTKFRSLNSFSQKNERQIFMF 131
>CA859018 similar to GP|6573149|gb|A growth-regulating factor 1 {Oryza
sativa}, partial (12%)
Length = 685
Score = 29.6 bits (65), Expect = 4.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 588 HLKLKHQLNGGNLMDLDIRNCSGLL 612
HLK H L+ ++DL +R CS LL
Sbjct: 566 HLK*SHNLDTSQILDLSVRGCSPLL 492
>TC76936 similar to GP|20160782|dbj|BAB89723. putative nascent polypeptide
associated complex alpha chain {Oryza sativa (japonica
cultivar-group)}, partial (86%)
Length = 914
Score = 29.6 bits (65), Expect = 4.0
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 640 EEGDNDDDEVEENEDEYDDDPYQEF 664
E+ D++DDE +E++D+ DDD + F
Sbjct: 153 EDDDDEDDEDDEDDDDEDDDNAEGF 227
Score = 28.9 bits (63), Expect = 6.7
Identities = 9/24 (37%), Positives = 19/24 (78%)
Frame = +3
Query: 636 PSIDEEGDNDDDEVEENEDEYDDD 659
P ++++ D DD++ E+++DE DD+
Sbjct: 144 PVVEDDDDEDDEDDEDDDDEDDDN 215
>TC86645 similar to PIR|H86321|H86321 hypothetical protein AAF27100.1
[imported] - Arabidopsis thaliana, partial (76%)
Length = 1116
Score = 29.3 bits (64), Expect = 5.2
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Frame = +3
Query: 639 DEEGD--NDDDEVEENEDEYDDDPYQE 663
DE GD DDD+ E+++D+ DDD +E
Sbjct: 753 DEAGDAGKDDDDSEDDDDQEDDDDDEE 833
>TC77337 weakly similar to GP|4019275|gb|AAC95573.1| orf 48 {Ateline
herpesvirus 3}, partial (8%)
Length = 986
Score = 29.3 bits (64), Expect = 5.2
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQEFPPAMGIND 672
DE+GD+ D++ +E+ED+ D++ E G+++
Sbjct: 606 DEDGDDQDEDDDEDEDDDDEEEGGEEDEEEGVDE 707
Score = 28.9 bits (63), Expect = 6.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 639 DEEGDNDDDEVEENEDEYDDDPYQE 663
+EE D D D+ +E++DE +DD +E
Sbjct: 594 EEEDDEDGDDQDEDDDEDEDDDDEE 668
Score = 28.5 bits (62), Expect = 8.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 634 GLPSIDEEGDNDDDEVEENEDEYDDD 659
G DE G+ +DDE +++DE DD+
Sbjct: 567 GAGGADENGEEEDDEDGDDQDEDDDE 644
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,408,394
Number of Sequences: 36976
Number of extensions: 284364
Number of successful extensions: 2086
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 1657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1906
length of query: 677
length of database: 9,014,727
effective HSP length: 103
effective length of query: 574
effective length of database: 5,206,199
effective search space: 2988358226
effective search space used: 2988358226
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Medicago: description of AC138452.7