Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138199.5 + phase: 0 
         (617 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF003873 similar to GP|14715222|em putative polyprotein {Cicer a...   231  5e-61
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly...   186  3e-47
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro...   179  3e-45
BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, pa...   114  6e-30
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr...    72  5e-17
BG644699 similar to PIR|T07863|T078 probable polyprotein - pinea...    64  1e-10
BG587176 weakly similar to PIR|G84493|G84 probable retroelement ...    56  5e-08
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana...    55  6e-08
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ...    43  3e-04
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis...    39  0.008
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p...    37  0.017
BG644733 weakly similar to GP|15289942|db putative polyprotein {...    36  0.038
TC93746 weakly similar to GP|22830935|dbj|BAC15800. hypothetical...    31  1.2
TC88718 weakly similar to GP|3850569|gb|AAC72109.1| ESTs gb|T212...    31  1.6
BF636649 similar to GP|21628724|emb OSJNBa0033H08.7 {Oryza sativ...    30  2.1
TC89832 homologue to GP|21618319|gb|AAM67369.1 unknown {Arabidop...    30  2.7
TC76794 similar to GP|7416846|dbj|BAA94084.1 NAD-dependent sorbi...    30  3.6
BE325109 similar to PIR|T04011|T040 hypothetical protein T5L19.2...    30  3.6
TC83361 similar to PIR|E96729|E96729 unknown protein F5A18.27 [i...    29  4.7
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...    29  4.7

>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
           partial (82%)
          Length = 559

 Score =  231 bits (590), Expect = 5e-61
 Identities = 115/126 (91%), Positives = 119/126 (94%)
 Frame = +2

Query: 492 GVGRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVSQLQKYVPDPSHV 551
           GVGRALKSKKLT +FIGPYQI ERVGTVAYRVGLPPHL NLH+VFHVSQL+KYVPDPSHV
Sbjct: 2   GVGRALKSKKLTVRFIGPYQISERVGTVAYRVGLPPHLLNLHDVFHVSQLRKYVPDPSHV 181

Query: 552 IQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVRVVWTGATGESLTWELESKMLVS 611
           IQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVRVVW  A GESLTWELESKM+ S
Sbjct: 182 IQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVRVVWDRANGESLTWELESKMVES 361

Query: 612 YPELFA 617
           YPELFA
Sbjct: 362 YPELFA 379


>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (13%)
          Length = 736

 Score =  186 bits (471), Expect = 3e-47
 Identities = 97/215 (45%), Positives = 142/215 (65%), Gaps = 1/215 (0%)
 Frame = +2

Query: 2   QEGKVVAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFD 61
           Q  KV+AYASRQLR HE NYPTHDLE+AAVVF LKIWR YLYG++ ++ +DHKSLKY+F 
Sbjct: 98  QHEKVIAYASRQLRKHEGNYPTHDLEMAAVVFALKIWRSYLYGAKVQIHTDHKSLKYIFT 277

Query: 62  QKELNMRQRRWLELLKDYDFGLNYHPGKANVVADALSRKTLHMSAMMVREFELLEQFRDM 121
           Q ELN+RQRRW+E + DYD  + Y+PGKAN+VADALSR+ + +SA   RE + L+     
Sbjct: 278 QPELNLRQRRWMEFVADYDLDITYYPGKANLVADALSRRRVDVSA--EREADDLDGMVRA 451

Query: 122 SLVCEWSPQSVKLGMLKID-SEFLRSIKEAQKVDVKFVDLLVARDQTEDSDFKFDDQGVL 180
             +   +  +  LG+  ++ ++    I+ AQ  D    + L    Q + ++++    G +
Sbjct: 452 LRLNVLTKATESLGLEAVNQADLFTRIRLAQGQD----ENLQKVAQNDRTEYQTAKDGTI 619

Query: 181 RFRGRICIPDNEEIKKMILEESHRSSLSIHPGATK 215
              GRI +P++  +K+ I+ E+H+S  S+HPGA +
Sbjct: 620 LVNGRISVPNDRSLKEEIMSEAHKSRFSVHPGAPR 724


>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
           blast fungus gypsy retroelement (fragment), partial
           (14%)
          Length = 1708

 Score =  179 bits (454), Expect = 3e-45
 Identities = 124/392 (31%), Positives = 193/392 (48%), Gaps = 13/392 (3%)
 Frame = +2

Query: 170 SDFKFDDQGVLRFRGRICIPDNE-------EIKKMILEESHRSSLSIHPGATKMYHDLKK 222
           S+ + D    L FRGRI +P ++       E++  +++ESH S+ + HPG       + +
Sbjct: 74  SECQLDSLKRLTFRGRIWVPGSDDEESPLNELRTKLVQESHDSTAAGHPGRNGTLEIVSR 253

Query: 223 IFWWSGLKRDVAQFVYSCLVCQKSKVEHQKPAGMMVPLDVPEWKWDSISMDFVTSLPNTP 282
            F+W G  + V +FV +C VC    +  Q   G + PL VP      +SMDF+TSLP T 
Sbjct: 254 KFFWPGQSQTVRRFVRNCDVCGGIHIWRQAKRGFLKPLPVPNRLHSDLSMDFITSLPPTR 433

Query: 283 -RGNDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVPSSIVSDRDPRFTS 341
            RG+  +WVIVDRL+KS     ++ +      A+ ++    + HG+P SIVSDR   +  
Sbjct: 434 GRGSQYLWVIVDRLSKSVTLEEMD-TMEAEACAQRFLSCHYRFHGMPQSIVSDRGSNWVG 610

Query: 342 RFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFT 401
           RFW+      G    LS++YHPQTDG +ER  Q ++ +LR  V      W   LP ++  
Sbjct: 611 RFWREFCRLTGVTQLLSTSYHPQTDGGTERWNQEIQAVLRAYVCWSQDNWGDLLPTVQLA 790

Query: 402 YNNSYHSSIGMAPFEALYGRRCRIPLCWFESGERVVLGPAIVQQTTEKVQ----MIQEKI 457
             N ++SSIG  PF   +G          ++G  V  G A  Q   ++++     IQ +I
Sbjct: 791 LRNRHNSSIGATPFFVEHGYHVDPIPTVEDTGGVVSEGEAAAQLLVKRMKDVTGFIQAEI 970

Query: 458 KASQSRQKTYHDKRRKDLE-FQEGDHVFLRVTPMTGVGRALKSKKLTPKFIGPYQILERV 516
            A+Q R +   +KRR   + +Q GD V+L V+       + K   L  K    Y++   V
Sbjct: 971 VAAQQRSEASANKRRCPADRYQVGDKVWLNVSNYKSPRPSKKLDWLHHK----YEVTRFV 1138

Query: 517 GTVAYRVGLPPHLSNLHNVFHVSQLQKYVPDP 548
                 + +P     ++  FHV  L++   DP
Sbjct: 1139TPHVVELNVP---GTVYPKFHVDLLRRAASDP 1225


>BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, partial (33%)
          Length = 560

 Score =  114 bits (284), Expect(4) = 6e-30
 Identities = 57/78 (73%), Positives = 65/78 (83%)
 Frame = +3

Query: 109 VREFELLEQFRDMSLVCEWSPQSVKLGMLKIDSEFLRSIKEAQKVDVKFVDLLVARDQTE 168
           +  +  LEQFRD+SLVCE SPQSVKLGMLKI++EFL SIKEAQKVDVK VDL+   +QTE
Sbjct: 51  LESWSCLEQFRDLSLVCEVSPQSVKLGMLKINNEFLDSIKEAQKVDVKLVDLMFGNNQTE 230

Query: 169 DSDFKFDDQGVLRFRGRI 186
           D DFK DDQGVL+FR RI
Sbjct: 231 DGDFKVDDQGVLQFRDRI 284



 Score = 26.9 bits (58), Expect(4) = 6e-30
 Identities = 11/15 (73%), Positives = 15/15 (99%)
 Frame = +2

Query: 194 IKKMILEESHRSSLS 208
           +KKMILEESHRS+++
Sbjct: 284 MKKMILEESHRSNVN 328



 Score = 25.4 bits (54), Expect(4) = 6e-30
 Identities = 11/13 (84%), Positives = 12/13 (91%)
 Frame = +1

Query: 92  VVADALSRKTLHM 104
           VVAD LSRKTLH+
Sbjct: 1   VVADVLSRKTLHV 39



 Score = 23.1 bits (48), Expect(4) = 6e-30
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 103 HMSAMMVREFEL 114
           +MSAMMVRE EL
Sbjct: 32  YMSAMMVRELEL 67


>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
           sativa (japonica cultivar-group)}, partial (7%)
          Length = 674

 Score = 72.4 bits (176), Expect(2) = 5e-17
 Identities = 37/81 (45%), Positives = 46/81 (56%)
 Frame = +2

Query: 341 SRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEF 400
           S FWK L +  G+ L +SSAYHP +DGQSE   +  E  LR  +      W    P  E+
Sbjct: 32  SNFWKQLFKLHGTILTMSSAYHP*SDGQSEALNKGXEMYLRCLMFTDPLKWSKAFPWAEY 211

Query: 401 TYNNSYHSSIGMAPFEALYGR 421
            YN SY+ S  M PF+ALYGR
Sbjct: 212 WYNTSYNISAAMTPFKALYGR 274



 Score = 33.5 bits (75), Expect(2) = 5e-17
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
 Frame = +1

Query: 443 VQQTTEKVQMIQEKIKASQSRQKTYH--DKRRKDLEFQEGDHVFLRVTPMTGVGRALK-- 498
           V  +TE+   +   I   +++Q   H  DK+R+  EFQ G+HV +++ P      AL+  
Sbjct: 331 VPVSTERRIAVTATIHLYKAQQTMKHQADKKRRHFEFQLGEHVLVKLQPYQQSSVALRKY 510

Query: 499 SKKLTPKFIGPYQILERVGTVAYRVGLPPHLS 530
            K  +P F     +       A+    PP+LS
Sbjct: 511 QKFGSPNFGSLLTVCSL*VESAFHCKSPPYLS 606


>BG644699 similar to PIR|T07863|T078 probable polyprotein - pineapple
           retrotransposon dea1 (fragment), partial (5%)
          Length = 231

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 31/74 (41%), Positives = 50/74 (66%), Gaps = 1/74 (1%)
 Frame = +2

Query: 481 DHVFLRVTPMT-GVGRALKSKKLTPKFIGPYQILERVGTVAYRVGLPPHLSNLHNVFHVS 539
           + V L+V P   G  R  K  KL+ ++IGP+++++R+G VAY + LPP LS +H VFHVS
Sbjct: 2   EQVLLKVLPTERGDCRFGKRGKLSLRYIGPFEVIKRIGEVAYELALPPGLSGVHPVFHVS 181

Query: 540 QLQKYVPDPSHVIQ 553
             ++Y  D +++I+
Sbjct: 182 MFKRYHGDGNYIIR 223


>BG587176 weakly similar to PIR|G84493|G84 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (1%)
          Length = 729

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 26/54 (48%), Positives = 35/54 (64%)
 Frame = -1

Query: 563 LTVETLPVRIDDRKVKTLRGKEIPLVRVVWTGATGESLTWELESKMLVSYPELF 616
           L +ET PVRI DR  K +R K I +V++VW  +  E +TWE E++M   YPE F
Sbjct: 717 LDLETRPVRILDRMEKAMRKKPIQMVKIVWDCSGREEITWETEARMKADYPEWF 556


>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
           (10%)
          Length = 624

 Score = 55.5 bits (132), Expect = 6e-08
 Identities = 44/179 (24%), Positives = 86/179 (47%), Gaps = 6/179 (3%)
 Frame = +2

Query: 198 ILEESHRSSLSIHPGATKMYHDLKKI-FWWSGLKRDVAQFVYSCLVCQKS---KVEHQKP 253
           IL   H S+ + H   +K    +++  FWW  + +D   F+  C  CQ+       ++ P
Sbjct: 104 ILFHCHGSNYAGHFAVSKTVSKIQQAGFWWPTMFKDAHSFISKCDPCQRQGNIS*RNEMP 283

Query: 254 AGMMVPLDVPEWKWDSISMDFVTSLPNTPRGNDAIWVIVDRLTKSAHFL--PINISFPVA 311
              ++ ++V    +D   +DF+   P++   N  I V VD ++K    +  P N +  V 
Sbjct: 284 QNFILEVEV----FDVWGIDFMGPFPSS-YNNKYILVAVDYVSKWVEAIASPTNDATVVV 448

Query: 312 QLAEIYIKEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSE 370
           ++   +   I    GVP  ++SD    F ++ ++ L +  G + ++++AYHPQ   +S+
Sbjct: 449 KM---FKSVIFPRFGVPRVVISDGGSHFINKVFEKLLKKNGVRHKVATAYHPQKAERSK 616


>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
           melanogaster}, partial (20%)
          Length = 192

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 29/43 (66%)
 Frame = +1

Query: 7   VAYASRQLRVHEKNYPTHDLELAAVVFVLKIWRHYLYGSRFEV 49
           +AYASR L   E+NY   + E  A ++ ++ +RHYL+G +FE+
Sbjct: 64  IAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYLHGPKFEL 192


>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
           chromosome II BAC F26H6; putative retroelement pol
           polyprotein, partial (1%)
          Length = 636

 Score = 38.5 bits (88), Expect = 0.008
 Identities = 24/76 (31%), Positives = 39/76 (50%), Gaps = 3/76 (3%)
 Frame = -2

Query: 30  AVVFVLKIWRHYLYGSRFEVFSDHKSLKYLFDQKELNMRQRRWLELLKDYDFGLNYHPGK 89
           A+ +  K  RHY+      + S    +KY+F++  L  R  RW  LL +YD  + Y   K
Sbjct: 623 ALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYD--IEYRSQK 450

Query: 90  A---NVVADALSRKTL 102
           A   +++AD L+ + L
Sbjct: 449 AIKGSILADHLAHQPL 402


>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol
           polyprotein [imported] - Arabidopsis thaliana, partial
           (7%)
          Length = 686

 Score = 37.4 bits (85), Expect = 0.017
 Identities = 21/71 (29%), Positives = 37/71 (51%)
 Frame = -2

Query: 325 HGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICV 384
           HG+P  IV+D    F S  ++   E    +L  +S  +PQ++GQ+E + + + D L+  +
Sbjct: 685 HGLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKIIIDGLKKRL 506

Query: 385 LEQGGTWDSHL 395
             + G W   L
Sbjct: 505 DLKKGCWADEL 473


>BG644733 weakly similar to GP|15289942|db putative polyprotein {Oryza sativa
           (japonica cultivar-group)}, partial (1%)
          Length = 174

 Score = 36.2 bits (82), Expect = 0.038
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = -3

Query: 286 DAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLH 325
           ++I V+VDRLTKS  F+P   S+     A I + EIV +H
Sbjct: 121 ESI*VVVDRLTKSTLFIPFKTSYSAK*YARILLDEIVCIH 2


>TC93746 weakly similar to GP|22830935|dbj|BAC15800. hypothetical
           protein~similar to gag-pol polyprotein {Oryza sativa
           (japonica cultivar-group)}, partial (4%)
          Length = 1019

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +2

Query: 262 VPEWKWDSISMDFVTSLPNTPRGNDAIWVIVDRLTKSAHFL 302
           VP+  W+ +++DF   L  T +  D+  V+ D+ ++ AHF+
Sbjct: 476 VPKPPWEDVTIDFSLGLL*TQQLKDSKMVVGDKFSRMAHFI 598


>TC88718 weakly similar to GP|3850569|gb|AAC72109.1| ESTs gb|T21276
           gb|T45403  and gb|AA586113 come from this gene.
           {Arabidopsis thaliana}, partial (16%)
          Length = 1356

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/53 (33%), Positives = 26/53 (48%), Gaps = 8/53 (15%)
 Frame = +3

Query: 132 VKLGMLKIDSEF--------LRSIKEAQKVDVKFVDLLVARDQTEDSDFKFDD 176
           VK+   KID E         L  +K+A+    KFV   ++ D+ ED  + FDD
Sbjct: 747 VKIVPSKIDDEIFWSRYFYKLHKLKQAEDARAKFVKRAISGDEEEDLSWDFDD 905


>BF636649 similar to GP|21628724|emb OSJNBa0033H08.7 {Oryza sativa}, partial
           (4%)
          Length = 653

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 17/55 (30%), Positives = 26/55 (46%)
 Frame = +1

Query: 365 TDGQSERTIQSLEDLLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMAPFEALY 419
           +D Q+     +LE  L     EQ G  +  L   E  YN ++H + G  PF+ +Y
Sbjct: 7   SDEQAGLLNHTLETHLLYFTSEQQGV*NFFLTWAECLYNTNFHRTAGCTPFKVVY 171


>TC89832 homologue to GP|21618319|gb|AAM67369.1 unknown {Arabidopsis
           thaliana}, partial (62%)
          Length = 1347

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 323 KLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSER 371
           +++G PS I   R       FW S+   LGS  R    Y P TDG + R
Sbjct: 727 QIYGPPSKINKARQRTNVQVFWGSVH-GLGSFCRRCYCYSPDTDGIARR 870


>TC76794 similar to GP|7416846|dbj|BAA94084.1 NAD-dependent sorbitol
            dehydrogenase {Prunus persica}, partial (93%)
          Length = 1691

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = -2

Query: 530  SNLHNVFHVSQLQKYVPDPSH 550
            SNL N+FHVS  + YVP+P++
Sbjct: 1690 SNLINIFHVS*FKVYVPNPTN 1628


>BE325109 similar to PIR|T04011|T040 hypothetical protein T5L19.200 -
           Arabidopsis thaliana, partial (9%)
          Length = 430

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 14/43 (32%), Positives = 25/43 (57%)
 Frame = +1

Query: 345 KSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 387
           KSLQ   G++++L   + P+ D   ERT+Q   D  +I + ++
Sbjct: 79  KSLQTKTGARIQLIPQHLPEGDDSKERTVQVTGDKRQIEIAQE 207


>TC83361 similar to PIR|E96729|E96729 unknown protein F5A18.27 [imported] -
           Arabidopsis thaliana, partial (57%)
          Length = 1095

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 44/165 (26%), Positives = 67/165 (39%), Gaps = 7/165 (4%)
 Frame = +2

Query: 330 SIVSDR-DPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQG 388
           SIVSD   P  T++ +K+  E L  KLR    +  + +  + +TIQS +  L  C+L   
Sbjct: 284 SIVSDSIHPSKTNQTYKAGSELL--KLRRIRTHLMKINKPAVKTIQSPDGDLIDCILSHH 457

Query: 389 GT------WDSHLPLIEFTYNNSYHSSIGMAPFEALYGRRCRIPLCWFESGERVVLGPAI 442
                      H PL      N Y+++ G    E L          W +SGE    G   
Sbjct: 458 QPAFDHPKLKGHKPLDPPERPNGYYNN-GEKVSERLQ--------LWTDSGEECPEGTVP 610

Query: 443 VQQTTEKVQMIQEKIKASQSRQKTYHDKRRKDLEFQEGDHVFLRV 487
           +++TTE   +    IK    + K      R+D    + +H  L V
Sbjct: 611 IRRTTEDDILRASSIKRFGRKPKPV----RRDSTSSDHEHAILFV 733


>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
            alternata}, partial (21%)
          Length = 1540

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 7    VAYASRQLRVHEKNYPTHDLELAAV 31
            VA+ S++L   E NYP HD EL AV
Sbjct: 1438 VAFHSQRLSPAEYNYPIHDKELLAV 1512


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,301,355
Number of Sequences: 36976
Number of extensions: 270427
Number of successful extensions: 1343
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1339
length of query: 617
length of database: 9,014,727
effective HSP length: 102
effective length of query: 515
effective length of database: 5,243,175
effective search space: 2700235125
effective search space used: 2700235125
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)


Medicago: description of AC138199.5