BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138199.2 + phase: 0
(617 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86630 similar to GP|22136930|gb|AAM91809.1 unknown protein {Ar... 1165 0.0
BG448788 similar to PIR|B96739|B967 hypothetical protein F14O23.... 38 0.013
TC84831 similar to GP|7269303|emb|CAB79363.1 PsRT17-1 like prote... 30 2.7
BE205219 similar to GP|10798823|db contains ESTs C72526(E1778) C... 30 2.7
BE318403 similar to GP|20127066|gb| putative bHLH transcription ... 30 3.6
TC87253 similar to GP|21592813|gb|AAM64762.1 ids4-like protein {... 29 4.7
TC90969 similar to PIR|A84677|A84677 hypothetical protein At2g27... 28 8.0
>TC86630 similar to GP|22136930|gb|AAM91809.1 unknown protein {Arabidopsis
thaliana}, partial (41%)
Length = 1927
Score = 1165 bits (3013), Expect = 0.0
Identities = 598/598 (100%), Positives = 598/598 (100%)
Frame = +3
Query: 20 DTHFVADSEMLVPAGDTEFAKDASFGYKSSNLCDWVEEKTNGRILASSVVSISIQLLRKG 79
DTHFVADSEMLVPAGDTEFAKDASFGYKSSNLCDWVEEKTNGRILASSVVSISIQLLRKG
Sbjct: 3 DTHFVADSEMLVPAGDTEFAKDASFGYKSSNLCDWVEEKTNGRILASSVVSISIQLLRKG 182
Query: 80 GPDAVCKHLCSLKKGSVCIVNAASERDMTVFALGMIKAELSGKRFLCRTAASFVSACIGI 139
GPDAVCKHLCSLKKGSVCIVNAASERDMTVFALGMIKAELSGKRFLCRTAASFVSACIGI
Sbjct: 183 GPDAVCKHLCSLKKGSVCIVNAASERDMTVFALGMIKAELSGKRFLCRTAASFVSACIGI 362
Query: 140 ISKPPVLPKDLGIGRERNGGLTIVGSYVPKTTKQVEQLKLQCGHFLRSIEASVEKLAMGS 199
ISKPPVLPKDLGIGRERNGGLTIVGSYVPKTTKQVEQLKLQCGHFLRSIEASVEKLAMGS
Sbjct: 363 ISKPPVLPKDLGIGRERNGGLTIVGSYVPKTTKQVEQLKLQCGHFLRSIEASVEKLAMGS 542
Query: 200 IEEREDEISRAAELADVYLKNRKDTLVMTSRNLITGKSASESLDINYKVSSALVEIMKRI 259
IEEREDEISRAAELADVYLKNRKDTLVMTSRNLITGKSASESLDINYKVSSALVEIMKRI
Sbjct: 543 IEEREDEISRAAELADVYLKNRKDTLVMTSRNLITGKSASESLDINYKVSSALVEIMKRI 722
Query: 260 TTKPRYIIAKGGITSSDLATKALGAKCAKVVGQALAGIPLWQLGPESRHPGVPYIVFPGN 319
TTKPRYIIAKGGITSSDLATKALGAKCAKVVGQALAGIPLWQLGPESRHPGVPYIVFPGN
Sbjct: 723 TTKPRYIIAKGGITSSDLATKALGAKCAKVVGQALAGIPLWQLGPESRHPGVPYIVFPGN 902
Query: 320 VGDSGALAQVVKSWTCPSTISSTKEILNNAEKGGYAVGAFNVYNLEGVDAVVSAAEETQS 379
VGDSGALAQVVKSWTCPSTISSTKEILNNAEKGGYAVGAFNVYNLEGVDAVVSAAEETQS
Sbjct: 903 VGDSGALAQVVKSWTCPSTISSTKEILNNAEKGGYAVGAFNVYNLEGVDAVVSAAEETQS 1082
Query: 380 PAILQIHPGALKQGGIPLVSCCISAAERASVPITVHFDHGTSKEDLVEALEQGVSSLMVD 439
PAILQIHPGALKQGGIPLVSCCISAAERASVPITVHFDHGTSKEDLVEALEQGVSSLMVD
Sbjct: 1083PAILQIHPGALKQGGIPLVSCCISAAERASVPITVHFDHGTSKEDLVEALEQGVSSLMVD 1262
Query: 440 GSHLSFEENVKYTKFISLLAHSKDMLVEAELGRLSGTEDDLTVEEYEAKLTDINKAEKFI 499
GSHLSFEENVKYTKFISLLAHSKDMLVEAELGRLSGTEDDLTVEEYEAKLTDINKAEKFI
Sbjct: 1263GSHLSFEENVKYTKFISLLAHSKDMLVEAELGRLSGTEDDLTVEEYEAKLTDINKAEKFI 1442
Query: 500 DETGIDALAVCIGNVHGKYPASGPKLRLDLLKELRAVSQKKGVLLVLHGASGLGTELVKE 559
DETGIDALAVCIGNVHGKYPASGPKLRLDLLKELRAVSQKKGVLLVLHGASGLGTELVKE
Sbjct: 1443DETGIDALAVCIGNVHGKYPASGPKLRLDLLKELRAVSQKKGVLLVLHGASGLGTELVKE 1622
Query: 560 CINLGVRKFNVNTEVRKAYMDSLNTPKSDLVNVMASARDAMKAVVAEKMHLFGSAGKA 617
CINLGVRKFNVNTEVRKAYMDSLNTPKSDLVNVMASARDAMKAVVAEKMHLFGSAGKA
Sbjct: 1623CINLGVRKFNVNTEVRKAYMDSLNTPKSDLVNVMASARDAMKAVVAEKMHLFGSAGKA 1796
>BG448788 similar to PIR|B96739|B967 hypothetical protein F14O23.7 [imported]
- Arabidopsis thaliana, partial (14%)
Length = 518
Score = 37.7 bits (86), Expect = 0.013
Identities = 26/92 (28%), Positives = 47/92 (50%), Gaps = 14/92 (15%)
Frame = +1
Query: 243 DINYKVS-SALVEIMKRITTKPRYIIAKGGITSSDL--ATKALGAKCAKV-----VGQAL 294
D N +++ S ++ + ++ R +A+G +T+SDL K G +C+ + +G+++
Sbjct: 178 DFNDRINVSRARRLLDEVESRARVDLAQGYMTNSDLERVIKEFGQRCSNISRIYSIGKSV 357
Query: 295 AGIPLWQL------GPESRHPGVPYIVFPGNV 320
G+PLW + G E P YI GNV
Sbjct: 358 NGVPLWAIEISDKPGEEEPEPAFKYI---GNV 444
>TC84831 similar to GP|7269303|emb|CAB79363.1 PsRT17-1 like protein
{Arabidopsis thaliana}, partial (13%)
Length = 502
Score = 30.0 bits (66), Expect = 2.7
Identities = 21/66 (31%), Positives = 30/66 (44%), Gaps = 5/66 (7%)
Frame = -2
Query: 510 CIGNVH-----GKYPASGPKLRLDLLKELRAVSQKKGVLLVLHGASGLGTELVKECINLG 564
CI N H +YPA GP+L L+L +R ++G L GT+L K + L
Sbjct: 408 CISNFHYLFLKTRYPAQGPRLYLELDLFIRRAFCQRGALFQSLAILHHGTKL*KP*VQLS 229
Query: 565 VRKFNV 570
R +
Sbjct: 228 *RSIYI 211
>BE205219 similar to GP|10798823|db contains ESTs C72526(E1778) C93646(E1285)
AU092446(C50777) AU101135(E1285)
AU083448(E1778)~unknown, partial (93%)
Length = 615
Score = 30.0 bits (66), Expect = 2.7
Identities = 24/81 (29%), Positives = 40/81 (48%), Gaps = 4/81 (4%)
Frame = +3
Query: 192 VEKLAMGSIEEREDEISRAAELADVY--LKNRKDTLVMTSRNLITGKSASESLDINYKVS 249
+E + G++E E A+ + D++ L TLV SR+ +T ++ L NY S
Sbjct: 69 LESMRAGTLEP-EVAFLNASLIPDIFPVLAAAHKTLVTKSRDSLTTRTLHSELVYNYSGS 245
Query: 250 SALVEIMKR--ITTKPRYIIA 268
+ E +KR I+ YI+A
Sbjct: 246 KHITESLKRCGISESTTYILA 308
>BE318403 similar to GP|20127066|gb| putative bHLH transcription factor
{Arabidopsis thaliana}, partial (7%)
Length = 562
Score = 29.6 bits (65), Expect = 3.6
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Frame = +3
Query: 114 MIKAELSGKRFL-CRTAASFVSACIGIISKPPVLPKDLGIGRERN 157
M+++E+S +L +A VS C G+I+ +LP ++G+ R N
Sbjct: 105 MMQSEMSNPAYLQFNSAQQQVSCCGGLINNMGILPPEIGVRRNIN 239
>TC87253 similar to GP|21592813|gb|AAM64762.1 ids4-like protein {Arabidopsis
thaliana}, partial (80%)
Length = 1285
Score = 29.3 bits (64), Expect = 4.7
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Frame = +2
Query: 145 VLPKDLGIGRERNGGLTIVGSYVPKTTKQVEQLKLQCGHFLRSIEASVEKLAMGSIEERE 204
++PK++ + L G + TK+V+ FLR +E +EK +E+ E
Sbjct: 182 IVPKEIDSSCSKRRRLDDDGGAEGEVTKEVKD-------FLRLLEVEIEKFNGFFVEKEE 340
Query: 205 DEISRAAELAD--VYLKNRKDTLVMTSRNLITGKSASESLDINYKV--SSALVEIMKR 258
+ + + EL D + K+ L+ R ++ L+ NY + LV+I+K+
Sbjct: 341 EYVIKWKELQDKVAWAKSSDIELMTVGREIVDFHGEMVLLE-NYSALNYTGLVKIIKK 511
>TC90969 similar to PIR|A84677|A84677 hypothetical protein At2g27790
[imported] - Arabidopsis thaliana, partial (45%)
Length = 778
Score = 28.5 bits (62), Expect = 8.0
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 199 SIEEREDEIS--RAAELADVYLKNRKDTLVMTSRNLITGKSASESLDINYKVSSALVEIM 256
S+ + +D++ R LA + + KDT+ +SR LIT ++ +S ++ SS E+
Sbjct: 322 SLSDTKDKLEGRRKEVLARLNPRRPKDTIASSSRPLITSNTSCQSEHLDPNQSSQEFEVR 501
Query: 257 KRITTKPRYIIA 268
+ P+ ++
Sbjct: 502 SNNSNLPKRTVS 537
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,370,738
Number of Sequences: 36976
Number of extensions: 203418
Number of successful extensions: 903
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of query: 617
length of database: 9,014,727
effective HSP length: 102
effective length of query: 515
effective length of database: 5,243,175
effective search space: 2700235125
effective search space used: 2700235125
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Medicago: description of AC138199.2