BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138063.3 - phase: 0 /pseudo
(111 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CB895143 47 1e-06
BQ751262 similar to GP|6715100|gb|A versicolorin B synthase {Asp... 28 0.41
TC83295 similar to SP|O81117|C941_VICSA Cytochrome P450 94A1 (EC... 28 0.70
TC90176 similar to GP|9759112|dbj|BAB09597.1 low density lipopro... 27 0.91
AW697223 similar to GP|9757890|dbj phosphoribosylanthranilate tr... 27 0.91
TC87544 similar to SP|P50699|TLPH_ARATH Thaumatin-like protein p... 27 1.2
TC93337 weakly similar to GP|21240660|gb|AAM44371.1 hypothetical... 27 1.6
TC87434 similar to SP|P52902|ODPA_PEA Pyruvate dehydrogenase E1 ... 27 1.6
TC90982 weakly similar to GP|9758054|dbj|BAB08517.1 gene_id:MYC6... 27 1.6
TC78854 similar to GP|22022585|gb|AAM83249.1 AT5g49970/K9P8_11 {... 27 1.6
TC76562 similar to PIR|T11622|T11622 extensin class 1 precursor ... 27 1.6
BQ141902 27 1.6
BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich g... 26 2.0
TC93234 weakly similar to GP|21751020|dbj|BAC03887. unnamed prot... 26 2.0
TC81252 similar to PIR|T52624|T52624 b-Zip DNA binding protein [... 26 2.0
TC86432 similar to PIR|T05120|T05120 hypothetical protein F7H19.... 26 2.7
BG648587 similar to SP|P25469|H2A_ Histone H2A. [Tomato] {Lycope... 26 2.7
TC76728 similar to GP|20521241|dbj|BAB91757. putative 60S riboso... 26 2.7
BQ139229 weakly similar to GP|20453199|gb AT3g18290/MIE15_8 {Ara... 26 2.7
TC85529 similar to GP|9758042|dbj|BAB08505.1 gb|AAD56319.1~gene_... 26 2.7
>CB895143
Length = 770
Score = 46.6 bits (109), Expect = 1e-06
Identities = 27/105 (25%), Positives = 54/105 (50%)
Frame = +2
Query: 1 FVGCYKDVVALKKSGASESDNISAAKDIYYQDVREKFTLENAWKLLRDEPKWLAGCVLEP 60
++ Y +++SG S+ D ++ A ++Y E F L + W ++RD+P++ +
Sbjct: 410 WIDAYDGAKRMQQSG*SKIDVLAKAHELYSSGKSEHFILISGWFVVRDQPRYDSQV---- 577
Query: 61 SAKRTKNSASGAYLASSNPPTPTSEYNPPQLPIGQKAAKKKGKEK 105
T + +SG+ A + + ++ P+G+ AAKK+ KEK
Sbjct: 578 -GGNTGSGSSGSKRAHKSDASDSNSVGSSSCPMGRDAAKKR*KEK 709
>BQ751262 similar to GP|6715100|gb|A versicolorin B synthase {Aspergillus
parasiticus}, partial (11%)
Length = 710
Score = 28.5 bits (62), Expect = 0.41
Identities = 13/29 (44%), Positives = 19/29 (64%)
Frame = +3
Query: 60 PSAKRTKNSASGAYLASSNPPTPTSEYNP 88
PS +R+ ++A+ ASS+PPTP S P
Sbjct: 549 PSPRRSSSTATKRPPASSSPPTPASPPTP 635
>TC83295 similar to SP|O81117|C941_VICSA Cytochrome P450 94A1 (EC 1.14.-.-)
(P450-dependent fatty acid omega-hydroxylase)., partial
(62%)
Length = 971
Score = 27.7 bits (60), Expect = 0.70
Identities = 15/38 (39%), Positives = 24/38 (62%), Gaps = 1/38 (2%)
Frame = +2
Query: 30 YQDVREKFTLENAWKL-LRDEPKWLAGCVLEPSAKRTK 66
+QD+ ++FT +N K+ +P++L PSAKRTK
Sbjct: 221 FQDILQRFTFDNICKIAFGFDPEYLT-----PSAKRTK 319
>TC90176 similar to GP|9759112|dbj|BAB09597.1 low density lipoprotein B-like
protein {Arabidopsis thaliana}, partial (33%)
Length = 1447
Score = 27.3 bits (59), Expect = 0.91
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 63 KRTKNSASGAYLASSNPPTPTSEYNP--PQLPI 93
K + NS+ SS PPTP+S NP PQ P+
Sbjct: 158 KSSVNSSVTVIETSSTPPTPSST*NPHAPQSPL 256
>AW697223 similar to GP|9757890|dbj phosphoribosylanthranilate
transferase-like protein {Arabidopsis thaliana}, partial
(5%)
Length = 778
Score = 27.3 bits (59), Expect = 0.91
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 65 TKNSASGAYLASSNPPTPTSEYNPP 89
T+ S + +L S PPTPT+ PP
Sbjct: 543 TRTSRAARHLPSPRPPTPTTHRVPP 469
>TC87544 similar to SP|P50699|TLPH_ARATH Thaumatin-like protein precursor.
[Mouse-ear cress] {Arabidopsis thaliana}, partial (92%)
Length = 1039
Score = 26.9 bits (58), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = -1
Query: 64 RTKNSASGAYLASSNPPTPTSEYNPPQLPIGQ 95
R+ + + A +A PP P + +PPQ P+ Q
Sbjct: 421 RSFPNVNSASVAGGVPPMPLQKRDPPQSPVAQ 326
>TC93337 weakly similar to GP|21240660|gb|AAM44371.1 hypothetical protein
{Dictyostelium discoideum}, partial (7%)
Length = 743
Score = 26.6 bits (57), Expect = 1.6
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 61 SAKRTKNSASGAY--LASSNPPTPTSEYNPPQL 91
S + T + SG++ ++SS+PP S ++PP L
Sbjct: 137 SLRSTTSGFSGSFSSISSSSPPLSPSSFSPPSL 39
>TC87434 similar to SP|P52902|ODPA_PEA Pyruvate dehydrogenase E1 component
alpha subunit mitochondrial precursor (EC 1.2.4.1)
(PDHE1-A)., complete
Length = 1829
Score = 26.6 bits (57), Expect = 1.6
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 58 LEPSAKRTKNSASGAYLAS-SNPPTPTSEYNPPQL 91
L+PS + + N + + L++ +PPTP S+ PP L
Sbjct: 261 LQPSNQISSNQSPPSSLSTVRSPPTPHSQSKPPSL 365
>TC90982 weakly similar to GP|9758054|dbj|BAB08517.1
gene_id:MYC6.16~pir||T13026~strong similarity to unknown
protein {Arabidopsis thaliana}, partial (4%)
Length = 510
Score = 26.6 bits (57), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 65 TKNSASGAYLASSNPPTPTSEYNPPQLP 92
T S+S AYL+ + PTP S Y P+ P
Sbjct: 79 TPLSSSMAYLSHLHFPTPISYYTTPKTP 162
>TC78854 similar to GP|22022585|gb|AAM83249.1 AT5g49970/K9P8_11 {Arabidopsis
thaliana}, partial (92%)
Length = 1766
Score = 26.6 bits (57), Expect = 1.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 79 PPTPTSEYNPPQLPIGQKAAKKKGKEKHVVFQV 111
P SE+ PP +P+G KK + HV FQ+
Sbjct: 1331 PHQKLSEHTPPHVPVGLNHPNKK-ELMHVDFQI 1236
>TC76562 similar to PIR|T11622|T11622 extensin class 1 precursor - cowpea,
partial (48%)
Length = 1391
Score = 26.6 bits (57), Expect = 1.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +2
Query: 63 KRTKNSASGAYLASSNPPTPTSEYNPPQLPI 93
++ K S + Y S PP+P +YN P P+
Sbjct: 695 EKPKPSPTPYYYKSPPPPSPVYKYNSPPPPV 787
Score = 24.3 bits (51), Expect = 7.7
Identities = 9/21 (42%), Positives = 11/21 (51%)
Frame = +2
Query: 73 YLASSNPPTPTSEYNPPQLPI 93
Y S PP P +YN P P+
Sbjct: 989 YYKSPPPPAPVYKYNSPPPPV 1051
Score = 24.3 bits (51), Expect = 7.7
Identities = 9/21 (42%), Positives = 11/21 (51%)
Frame = +2
Query: 73 YLASSNPPTPTSEYNPPQLPI 93
Y S PP P +YN P P+
Sbjct: 1121 YYKSPPPPAPVYKYNSPPPPV 1183
Score = 24.3 bits (51), Expect = 7.7
Identities = 9/21 (42%), Positives = 11/21 (51%)
Frame = +2
Query: 73 YLASSNPPTPTSEYNPPQLPI 93
Y S PP P +YN P P+
Sbjct: 857 YYKSPPPPAPVYKYNSPPPPV 919
>BQ141902
Length = 1112
Score = 26.6 bits (57), Expect = 1.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 74 LASSNPPTPTSEYNPPQLP 92
L ++ PPT T++Y+PP P
Sbjct: 602 LHTNKPPTHTTQYDPPTFP 658
>BQ144307 weakly similar to GP|6523547|emb| hydroxyproline-rich glycoprotein
DZ-HRGP {Volvox carteri f. nagariensis}, partial (24%)
Length = 1059
Score = 26.2 bits (56), Expect = 2.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 58 LEPSAKRTKNSASGA--YLASSNPPTPTSEYNPPQLP 92
L PSA +N YL++ PP P+ ++PP P
Sbjct: 549 LGPSATIPRNHLRSPIPYLSTPRPPPPSPHFSPPPPP 439
>TC93234 weakly similar to GP|21751020|dbj|BAC03887. unnamed protein product
{Homo sapiens}, partial (11%)
Length = 591
Score = 26.2 bits (56), Expect = 2.0
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = +2
Query: 62 AKRTKNSASGAYLASSNPPTPTSEYNPPQLP 92
++ TK S+ + +SS+PP PTS P P
Sbjct: 413 SRPTKGSSPSSTPSSSSPPAPTSPAISPSRP 505
>TC81252 similar to PIR|T52624|T52624 b-Zip DNA binding protein [imported]
- Arabidopsis thaliana, partial (48%)
Length = 1221
Score = 26.2 bits (56), Expect = 2.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 44 KLLRDEPKWLAGCVLEPSAKRTKNSASGAYLASSNPPTPTSEYNP 88
K +E KW C + T +SA+ ++++PP P S NP
Sbjct: 33 KFREEENKWRHKCKIPMHRLPTSSSAAA---STASPPPPPSPANP 158
>TC86432 similar to PIR|T05120|T05120 hypothetical protein F7H19.70 -
Arabidopsis thaliana, partial (72%)
Length = 1235
Score = 25.8 bits (55), Expect = 2.7
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Frame = +2
Query: 4 CYKDVVALKKS-GASESDNISAAKDIYYQDVREKFTLENA-WKLLRDEPKWLAGCVLEPS 61
C D KKS G E + + A + YY+ K + N + L++E W V+ S
Sbjct: 278 CSIDQKKEKKSVGELEQEFLQALQSFYYEG---KAIMSNEEFDNLKEELMWEGSSVVMLS 448
Query: 62 AKRTKNSASGAYLASSNPPTPTSEYNPPQLPIGQKAAKKKGKE 104
+ K + S NP EY+ +L + K++G E
Sbjct: 449 SDEQKFLEASMAYVSGNPILTDKEYDKLKLNL-----KREGSE 562
>BG648587 similar to SP|P25469|H2A_ Histone H2A. [Tomato] {Lycopersicon
esculentum}, partial (87%)
Length = 698
Score = 25.8 bits (55), Expect = 2.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 80 PTPTSEYNPPQLPIGQKAAK 99
P P + PP++P+ +KAAK
Sbjct: 17 PPPPQQPQPPKVPVEEKAAK 76
>TC76728 similar to GP|20521241|dbj|BAB91757. putative 60S ribosomal protein
{Oryza sativa (japonica cultivar-group)}, partial (90%)
Length = 1166
Score = 25.8 bits (55), Expect = 2.7
Identities = 15/35 (42%), Positives = 19/35 (53%)
Frame = +1
Query: 67 NSASGAYLASSNPPTPTSEYNPPQLPIGQKAAKKK 101
NSA G + S+ P PTS +PP G KAA +
Sbjct: 1015 NSARGKHNGSA--PAPTSGGSPPATTGGNKAAASR 1113
>BQ139229 weakly similar to GP|20453199|gb AT3g18290/MIE15_8 {Arabidopsis
thaliana}, partial (4%)
Length = 648
Score = 25.8 bits (55), Expect = 2.7
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 64 RTKNSASGAYLASSNP-PTPTSEYNPP 89
+T +A GA AS P PTPTS Y+ P
Sbjct: 332 KTTPTARGAMSASPYPTPTPTSAYHVP 412
>TC85529 similar to GP|9758042|dbj|BAB08505.1
gb|AAD56319.1~gene_id:MYC6.4~similar to unknown protein
{Arabidopsis thaliana}, partial (68%)
Length = 1818
Score = 25.8 bits (55), Expect = 2.7
Identities = 14/54 (25%), Positives = 26/54 (47%)
Frame = +1
Query: 2 VGCYKDVVALKKSGASESDNISAAKDIYYQDVREKFTLENAWKLLRDEPKWLAG 55
V C+ DV A +++ + +Y D++ + +N+W L D+ K L G
Sbjct: 1087 VDCFADVTVSDSLDAMFKVGVNSG-EAFYMDLKNLSSEKNSWVCLGDKRKVLNG 1245
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.310 0.128 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,634,394
Number of Sequences: 36976
Number of extensions: 47702
Number of successful extensions: 352
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of query: 111
length of database: 9,014,727
effective HSP length: 87
effective length of query: 24
effective length of database: 5,797,815
effective search space: 139147560
effective search space used: 139147560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)
Medicago: description of AC138063.3