TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138017.8 - phase: 2 /pseudo
         (600 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BQ137209                                                               32  0.91
TC85001 similar to GP|17529298|gb|AAL38876.1 unknown protein {Ar...    31  1.5
TC81324 similar to GP|21553871|gb|AAM62964.1 unknown {Arabidopsi...    30  2.6
BE998796 similar to GP|5441893|dbj| ESTs C99174(E10437) D22295(C...    30  2.6
AW687296 weakly similar to GP|20521419|db putative receptor-like...    30  3.5
TC78783 similar to GP|21537171|gb|AAM61512.1 unknown {Arabidopsi...    29  4.5

>BQ137209 
          Length = 1136

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -2

Query: 396  CCVSWTVKINLLWVFFTEIC 415
            CCVS  V   LLW+ FTE+C
Sbjct: 1129 CCVSVYVVTELLWICFTEVC 1070


>TC85001 similar to GP|17529298|gb|AAL38876.1 unknown protein {Arabidopsis
           thaliana}, partial (15%)
          Length = 588

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 17/56 (30%), Positives = 33/56 (58%)
 Frame = -2

Query: 39  KRQGSRKEKLNMQ*VMKSKHKEDNLGQWLLHLKRERTMEALIITFCLEQLPDHNLL 94
           +R+ +R + L +     S+ K+D+L  +LL LK+++  E L+    ++ L + NLL
Sbjct: 494 RRKSTRSKPLKLTRQKNSQRKDDHLVSFLLKLKKKKEKENLL*KPYVKSLKEINLL 327


>TC81324 similar to GP|21553871|gb|AAM62964.1 unknown {Arabidopsis
           thaliana}, partial (75%)
          Length = 1156

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 16/56 (28%), Positives = 28/56 (49%)
 Frame = +2

Query: 97  VCCKPRKL*KSVILHLQNGSLLHLFPSMQQIHHIFSLRSMLFVAWEPDIKLLLYMI 152
           +  K   L  + I H +NG+L+ L      +HH+    +M  V W+P +  +L +I
Sbjct: 422 ILLKAANLVTNAISHTENGNLVSLL-----LHHLMITVTMTTVTWDPPMLAVLAVI 574


>BE998796 similar to GP|5441893|dbj| ESTs C99174(E10437) D22295(C10709)
           correspond to a region of the predicted gene.~Similar
           to, partial (28%)
          Length = 609

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 16/56 (28%), Positives = 28/56 (49%)
 Frame = +2

Query: 97  VCCKPRKL*KSVILHLQNGSLLHLFPSMQQIHHIFSLRSMLFVAWEPDIKLLLYMI 152
           +  K   L  + I H +NG+L+ L      +HH+    +M  V W+P +  +L +I
Sbjct: 365 ILLKAANLVTNAISHTENGNLVSLL-----LHHLMITVTMTTVTWDPPMLAVLAVI 517


>AW687296 weakly similar to GP|20521419|db putative receptor-like kinase
           {Oryza sativa (japonica cultivar-group)}, partial (7%)
          Length = 458

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +3

Query: 114 NGSLLHLFPSMQQIHHIFSLRSMLF-VAWE 142
           N  L+ LF S QQIH +FS+  M+F + W+
Sbjct: 339 NDMLIPLFFSYQQIHSLFSILCMIFSIPWQ 428


>TC78783 similar to GP|21537171|gb|AAM61512.1 unknown {Arabidopsis
           thaliana}, partial (21%)
          Length = 1431

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/44 (38%), Positives = 29/44 (65%)
 Frame = +3

Query: 290 KRQFHMPQMLPSMYIIIVIHCI**GNLLMEERYFVLLQLALPLI 333
           K+ +H+ Q+ P + + IV H I *  LL++  + ++LQL +PLI
Sbjct: 102 KK*WHL-QLEPVVLLTIVSHKIS*CPLLLQNNWSLILQLVIPLI 230


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.360    0.161    0.561 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,144,706
Number of Sequences: 36976
Number of extensions: 339568
Number of successful extensions: 4126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1729
Number of HSP's successfully gapped in prelim test: 203
Number of HSP's that attempted gapping in prelim test: 2356
Number of HSP's gapped (non-prelim): 2031
length of query: 600
length of database: 9,014,727
effective HSP length: 102
effective length of query: 498
effective length of database: 5,243,175
effective search space: 2611101150
effective search space used: 2611101150
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 61 (28.1 bits)