TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC138017.12 + phase: 1 /pseudo
         (95 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AJ497418 homologue to GP|2623041|gb|A conserved protein {Methano...    40  2e-04
TC89568 homologue to PIR|T09544|T09544 phosphoprotein phosphatas...    27  1.0
BE205177 weakly similar to GP|9280691|gb| F2E2.13 {Arabidopsis t...    27  1.3
TC86412 similar to GP|21439790|emb|CAD35168. unnamed protein pro...    27  1.7
BF645886 similar to GP|14345995|gb| KANADI protein {Arabidopsis ...    26  2.2
BQ137204                                                               26  2.2
TC89740 similar to GP|16648877|gb|AAL24290.1 Unknown protein {Ar...    26  2.2
BI265474 weakly similar to PIR|T48058|T480 RING-H2 zinc finger p...    26  2.9
CA858891 similar to PIR|T06626|T06 hypothetical protein T20K18.3...    26  2.9
TC77076 similar to PIR|T07734|T07734 homeotic protein VAHOX1 - t...    25  3.8
TC86372 similar to GP|22775671|dbj|BAC15525. contains ESTs AU094...    25  5.0
BE318511 similar to GP|9581817|emb putative low-affinity nitrate...    25  6.5
BQ751379 similar to GP|18376126|em conserved hypothetical protei...    25  6.5
TC86663 similar to GP|5821432|dbj|BAA81662.2 F1F0-ATPase inhibit...    25  6.5
TC85328 similar to GP|21439796|emb|CAD35171. unnamed protein pro...    25  6.5
TC90186 homologue to PIR|T03740|T03740 glucose-6-phosphate 1-deh...    25  6.5
BQ751179 similar to GP|18025374|gb| MC8 {Micrococcus sp. 28}, pa...    25  6.5
AW685899 similar to SP|O64416|RBS_M Ribulose bisphosphate carbox...    24  8.5
TC78500 similar to PIR|D96543|D96543 unknown protein [imported] ...    24  8.5
TC92786 similar to PIR|B84431|B84431 probable receptor protein k...    24  8.5

>AJ497418 homologue to GP|2623041|gb|A conserved protein {Methanothermobacter
           thermautotrophicus str. Delta H}, partial (1%)
          Length = 626

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 25/71 (35%), Positives = 37/71 (51%), Gaps = 1/71 (1%)
 Frame = -3

Query: 20  GSMLAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKV-QIHRSHYDSAAYSSRGDGLS 78
           G +  +K  +GSRPP+C  +C +C  C A  V     KV QIH+     A  ++  D   
Sbjct: 240 GLINQKKSVLGSRPPRCVNKCLNCRPCMATFVISPHHKVGQIHK-----AKITAEKD--E 82

Query: 79  NYKPISWKCKC 89
            Y  +SW+C+C
Sbjct: 81  GYYLMSWECQC 49


>TC89568 homologue to PIR|T09544|T09544 phosphoprotein phosphatase (EC
           3.1.3.16)  catalytic beta chain - alfalfa, partial (52%)
          Length = 807

 Score = 27.3 bits (59), Expect = 1.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 36  CERRCRSCVHCEAVQVPIVPSKVQIHRSHYD 66
           C + C        +++P+V  KV++H  HYD
Sbjct: 525 CYKDCCVTSSLPGLELPMVARKVEVHSVHYD 617


>BE205177 weakly similar to GP|9280691|gb| F2E2.13 {Arabidopsis thaliana},
           partial (2%)
          Length = 634

 Score = 26.9 bits (58), Expect = 1.3
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = -3

Query: 34  PKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAY 70
           P C  +    +H E+ Q  ++  +  +H S YD+  +
Sbjct: 611 PSCNNKISKSLHSESKQAELLQRESSVHLSSYDATNF 501


>TC86412 similar to GP|21439790|emb|CAD35168. unnamed protein product
           {Glycine max}, complete
          Length = 693

 Score = 26.6 bits (57), Expect = 1.7
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 20  GSMLAEKLQIGSRPPKCERRCRS-CVHCEAV 49
           G +   +  + SRP  C+R C + CV C+ V
Sbjct: 227 GGLCRSRCSVHSRPNLCKRACGTCCVRCKCV 319


>BF645886 similar to GP|14345995|gb| KANADI protein {Arabidopsis thaliana},
           partial (5%)
          Length = 460

 Score = 26.2 bits (56), Expect = 2.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 56  SKVQIHRSHYDSAAYSSRGDGLSNYKPISWKCKC 89
           SKV IH S   S+  S+  +G S +K   WK  C
Sbjct: 258 SKVSIHESSASSSTESTTAEGESVWKF*VWKWIC 359


>BQ137204 
          Length = 827

 Score = 26.2 bits (56), Expect = 2.2
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +3

Query: 13  KNGMEENGSMLAEKLQIGSRPPKCERRCRSCVHCEAVQVPIVPSKVQIHRSHYDSAAYSS 72
           KNG+   G  + +K +  +  P   RR  +     A + PI+   V I    +D    S 
Sbjct: 276 KNGVYTGGDCMTKKDE*HTEKPTTTRRMNAYGFSSAEEPPIIDVDVTIPEMRFDRTCASI 455

Query: 73  R 73
           R
Sbjct: 456 R 458


>TC89740 similar to GP|16648877|gb|AAL24290.1 Unknown protein {Arabidopsis
           thaliana}, partial (58%)
          Length = 965

 Score = 26.2 bits (56), Expect = 2.2
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 76  GLSNYKPISWKCKCGDYFFN 95
           G SN     WKC C ++F N
Sbjct: 369 GCSNCGSFMWKCNCTEFFCN 428


>BI265474 weakly similar to PIR|T48058|T480 RING-H2 zinc finger protein ATL5
           - Arabidopsis thaliana, partial (19%)
          Length = 617

 Score = 25.8 bits (55), Expect = 2.9
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 45  HCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGLSNYKPISW 85
           +C   + P+ P+KVQ +            G+G SN+    W
Sbjct: 459 NCPLCRAPVQPAKVQSYTETCTVLGSGEPGEGCSNFPEPVW 581


>CA858891 similar to PIR|T06626|T06 hypothetical protein T20K18.30 -
           Arabidopsis thaliana, partial (26%)
          Length = 763

 Score = 25.8 bits (55), Expect = 2.9
 Identities = 10/29 (34%), Positives = 14/29 (47%)
 Frame = +1

Query: 36  CERRCRSCVHCEAVQVPIVPSKVQIHRSH 64
           C R C S  HC+    P+    + I R+H
Sbjct: 376 CSRCCISSYHCQFFS*PVWVESLSIRRTH 462


>TC77076 similar to PIR|T07734|T07734 homeotic protein VAHOX1 - tomato,
            partial (43%)
          Length = 1664

 Score = 25.4 bits (54), Expect = 3.8
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 39   RCRSCVHCEAVQVPIVP--SKVQIHRSHYDS 67
            RC+  ++C+ + + I P   +VQIHR ++ S
Sbjct: 1264 RCKEAINCDLLHLVIGPIDIQVQIHRKNHMS 1172


>TC86372 similar to GP|22775671|dbj|BAC15525. contains ESTs AU094470(E11056)
            C73573(E11056)~similar to beta-ureidopropionase, partial
            (86%)
          Length = 1631

 Score = 25.0 bits (53), Expect = 5.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 42   SCVHCEAVQVPIVPSKVQIH 61
            SC H EA  V I+P++V+IH
Sbjct: 1210 SCSHSEAPFVFILPAQVKIH 1151


>BE318511 similar to GP|9581817|emb putative low-affinity nitrate transporter
           {Nicotiana plumbaginifolia}, partial (24%)
          Length = 507

 Score = 24.6 bits (52), Expect = 6.5
 Identities = 7/22 (31%), Positives = 15/22 (67%)
 Frame = +3

Query: 33  PPKCERRCRSCVHCEAVQVPIV 54
           PPKC+   +SC+  ++ Q+ ++
Sbjct: 417 PPKCKEDSKSCIQADSKQLLVM 482


>BQ751379 similar to GP|18376126|em conserved hypothetical protein
           {Neurospora crassa}, partial (30%)
          Length = 771

 Score = 24.6 bits (52), Expect = 6.5
 Identities = 11/31 (35%), Positives = 14/31 (44%)
 Frame = +3

Query: 32  RPPKCERRCRSCVHCEAVQVPIVPSKVQIHR 62
           RP +       C H      P VPS+VQ+ R
Sbjct: 321 RPQRTRLHRAHCAHVPEPDRPAVPSQVQLQR 413


>TC86663 similar to GP|5821432|dbj|BAA81662.2 F1F0-ATPase inhibitor protein
           {Oryza sativa (japonica cultivar-group)}, partial (39%)
          Length = 744

 Score = 24.6 bits (52), Expect = 6.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 33  PPKCERRCRSCVHC 46
           P +C+  C SC HC
Sbjct: 153 PSRCKSCCHSCCHC 112


>TC85328 similar to GP|21439796|emb|CAD35171. unnamed protein product
           {Glycine max}, complete
          Length = 708

 Score = 24.6 bits (52), Expect = 6.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 19  NGSMLAEKLQIGSRPPKCERRCRSC 43
           NG+ +A + ++ SRP  C R C +C
Sbjct: 192 NGACVA-RCRLSSRPKLCHRACGTC 263


>TC90186 homologue to PIR|T03740|T03740 glucose-6-phosphate 1-dehydrogenase
           (EC 1.1.1.49) TPG18 - common tobacco, partial (38%)
          Length = 1168

 Score = 24.6 bits (52), Expect = 6.5
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 80  YKPISWKCKCGDYFFN 95
           +K +S+KC C  YF+N
Sbjct: 129 HKRLSYKCLCISYFYN 82


>BQ751179 similar to GP|18025374|gb| MC8 {Micrococcus sp. 28}, partial (4%)
          Length = 559

 Score = 24.6 bits (52), Expect = 6.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 45  HCEAVQVPIVPSKVQIHRSHYDSAAYSSRGDGL 77
           H E      +PS  Q HR+H    A+    DGL
Sbjct: 79  HTETNSRRSLPSSTQQHRAHNSRNAHEHHHDGL 177


>AW685899 similar to SP|O64416|RBS_M Ribulose bisphosphate carboxylase small
           chain  chloroplast precursor (EC 4.1.1.39), partial
           (53%)
          Length = 674

 Score = 24.3 bits (51), Expect = 8.5
 Identities = 7/15 (46%), Positives = 9/15 (59%)
 Frame = -3

Query: 81  KPISWKCKCGDYFFN 95
           +P +W CKC    FN
Sbjct: 105 RPSNWSCKCSSRHFN 61


>TC78500 similar to PIR|D96543|D96543 unknown protein [imported] -
           Arabidopsis thaliana, complete
          Length = 859

 Score = 24.3 bits (51), Expect = 8.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 59  QIHRSHYDSAAYSSRGDGLSNYKPISWKCK 88
           Q+H + +    +S   +G S  +P +W CK
Sbjct: 561 QLHSTMWGMPNWSHWSEGGSGARPSNWSCK 650


>TC92786 similar to PIR|B84431|B84431 probable receptor protein kinase
           [imported] - Arabidopsis thaliana, partial (20%)
          Length = 789

 Score = 24.3 bits (51), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 44  VHCEAVQVPIVPSKVQIHRSHYDSA 68
           V CE +QVP+ P  +QI    +  A
Sbjct: 459 VDCETIQVPVRPPYLQIRPVFFHEA 385


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,788,687
Number of Sequences: 36976
Number of extensions: 51714
Number of successful extensions: 316
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of query: 95
length of database: 9,014,727
effective HSP length: 71
effective length of query: 24
effective length of database: 6,389,431
effective search space: 153346344
effective search space used: 153346344
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)