BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137996.10 + phase: 0 /pseudo
(1594 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 188 2e-53
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 199 5e-51
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 154 2e-37
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 141 2e-33
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 79 2e-29
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 127 3e-29
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 126 6e-29
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 124 2e-28
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 122 8e-28
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 116 8e-26
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 107 5e-23
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 102 2e-22
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 92 2e-18
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 80 8e-15
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 79 1e-14
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 69 1e-11
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 65 2e-10
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 62 2e-09
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 61 3e-09
BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse ... 58 3e-08
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 188 bits (477), Expect(2) = 2e-53
Identities = 87/137 (63%), Positives = 114/137 (82%)
Frame = -2
Query: 1148 KPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEE 1207
K V QGY+Q+EGIDY E F+PVAR+EAIR+L+++A G LYQMDVKSAF+NG ++E
Sbjct: 412 KSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFINGDLKE 233
Query: 1208 EVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFR 1267
EV+VKQPPGFED + P+HV++L K+LYGLKQAPRAWY+RLS FL+KN F+RG++D TLF
Sbjct: 232 EVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDNTLFL 53
Query: 1268 RTLKKDILIVQIYVDDI 1284
+ ++LI+Q+YVDDI
Sbjct: 52 LKRE*ELLIIQVYVDDI 2
Score = 41.6 bits (96), Expect(2) = 2e-53
Identities = 24/54 (44%), Positives = 32/54 (58%), Gaps = 2/54 (3%)
Frame = -3
Query: 1077 SLIGLLSIIEPKTVEEALSDDGWILAMQEELINFKGMMCGIWY--PYPFRRTLL 1128
S +S IEPK V+EAL D WI +MQEEL F+ +WY P P +T++
Sbjct: 615 SFSAFISSIEPKNVKEALRDADWINSMQEELHQFE--RSKVWYLVPRPEGKTVI 460
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 199 bits (507), Expect = 5e-51
Identities = 93/217 (42%), Positives = 143/217 (65%), Gaps = 1/217 (0%)
Frame = +1
Query: 1319 IQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGM 1378
+++ Q++EG+Y+ Q KY +LL++F +E + P+ P C L K++ G VD Y+ +
Sbjct: 1 VEVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQI 180
Query: 1379 IGSLLYLTASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1438
+G L+YL A+RP +++ + L +RF + P E H+ AVKR+ RYL GT NLG++Y+++ K
Sbjct: 181 VGCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEK 360
Query: 1439 LIGFCDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQL 1498
L + D+DYAGD +RKSTSG L +SW+SK+Q + +ST +AE+I+AA C Q
Sbjct: 361 LEAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQS 540
Query: 1499 LWMKHQLEDY-QINANSIPIYCDNTAAICLSKNPILH 1534
+WM+ LE + SI +YCDN + I LSKNP+LH
Sbjct: 541 VWMRRVLEKLGYTQSGSITMYCDNNSTIKLSKNPVLH 651
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 154 bits (390), Expect = 2e-37
Identities = 87/240 (36%), Positives = 133/240 (55%)
Frame = +2
Query: 1226 VYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDII 1285
V +L+KS+YGLKQA R WY +LS LI + + D +LF + + +YVDDI+
Sbjct: 20 VCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVDDIV 199
Query: 1286 FGSTNASLCK*FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKL 1345
+ S + + D F++ +G L++FLG+++ +SK+G+ ++Q KYT ELL+
Sbjct: 200 LAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLEDSGN 379
Query: 1346 EDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPAILFSVCLCARFQSD 1405
K TP + L D+ D+ YR +IG L+YLT +RP I F+V ++F S
Sbjct: 380 LAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQFVSK 559
Query: 1406 PRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLG 1465
P++ H A R+ +YLK GL Y + + KL F D+D+A RKS +G FLG
Sbjct: 560 PQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWVFLG 739
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 141 bits (355), Expect = 2e-33
Identities = 72/146 (49%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Frame = +2
Query: 1445 ADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQ 1504
+D+AGD RKSTSG LG ISW+SK+Q +A STAEAEYI++ SC TQ +W++
Sbjct: 2 SDWAGDTETRKSTSGYAFHLGTGAISWSSKKQPVVAFSTAEAEYIASTSCATQTVWLRRI 181
Query: 1505 LEDYQINANS-IPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDI 1563
LE N+ IYCDN +AI LSKNP+ H R+KHI+I+ H IR+ + + + I++
Sbjct: 182 LEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHKIRELIAEKEVVIEYCPT 361
Query: 1564 EHQWADIFTKPLSVERFDFIKKNLNM 1589
E + ADIFTKPL +E F +KK L M
Sbjct: 362 EEKIADIFTKPLKIESFYKLKKMLGM 439
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 79.0 bits (193), Expect(2) = 2e-29
Identities = 32/100 (32%), Positives = 60/100 (60%)
Frame = +3
Query: 1490 SAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKNPILHSRAKHIEIKHHFIRD 1549
S C + +WM+ +E+ I +YCD+ +A+ +++NP HSR KHI I++HF+R+
Sbjct: 228 SLPQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVRE 407
Query: 1550 YVQKGILDIQFIDIEHQWADIFTKPLSVERFDFIKKNLNM 1589
V++G +D+Q I AD TK ++ ++F + + + +
Sbjct: 408 VVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSSYGL 527
Score = 70.1 bits (170), Expect(2) = 2e-29
Identities = 35/78 (44%), Positives = 52/78 (65%)
Frame = +1
Query: 1414 VKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLISWAS 1473
VKRI RY+KGT+ + + + S + + G+ D+D+AGD +RKST+G L +SW S
Sbjct: 1 VKRIMRYIKGTSGVAVCFGGS-ELTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLS 177
Query: 1474 KRQATIAMSTAEAEYISA 1491
K Q +A+ST EAEY++A
Sbjct: 178 KLQTVVALSTTEAEYMAA 231
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 127 bits (319), Expect = 3e-29
Identities = 64/122 (52%), Positives = 86/122 (70%)
Frame = -1
Query: 1148 KPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEE 1207
K VA+G++ G DY ETFAPVA+L IR++LS A+N G L+QMDVK+AFL G +E+
Sbjct: 375 KTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQMDVKNAFLQGELED 196
Query: 1208 EVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFR 1267
EVY+ PPG E L +V +LKK++YGLKQ+PRAWY++LS L F + ++D TLF
Sbjct: 195 EVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGRGFRKSELDHTLFT 16
Query: 1268 RT 1269
T
Sbjct: 15 LT 10
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 126 bits (317), Expect = 6e-29
Identities = 84/268 (31%), Positives = 145/268 (53%), Gaps = 16/268 (5%)
Frame = +3
Query: 1079 IGLLSII-EPKTVEEALSDDGWILAMQEE-----------LINFKGMMCGIWYPYPFRRT 1126
+G+L++ +P T EEA+ + W +M E L + + I + F+ T
Sbjct: 15 LGMLTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFK-T 191
Query: 1127 LLEQNGYSKTS*MNKEK*PETKPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAIN 1186
L +NG + + K VA+GYSQQ G+DYTE FAPVAR + IR++++ A
Sbjct: 192 KLNENGEIE----------KYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAAQ 341
Query: 1187 ---HGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAW 1243
G+ + M + + + + + + + ++K++LYGLKQAPRAW
Sbjct: 342 IKRDGVCIS*M*KAHSCMEN*MRKFLLINH----RVM*RRVIS*RVKRALYGLKQAPRAW 509
Query: 1244 YDRLSNFLIKNDFERGQVDTTLFRRTLKKD-ILIVQIYVDDIIFGSTNASLCK*FSKLMQ 1302
Y R+ + K FE+ + TLF + + ILI+ +YVDD+IF + ++ + F K M+
Sbjct: 510 YSRIEAYFTKEGFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMK 689
Query: 1303 DEFEMSMMGELKFFLGIQINQSKEGVYV 1330
EF MS +G++ +FLG+++ Q+++G+Y+
Sbjct: 690 KEFNMSDLGKMHYFLGVEVTQNEKGIYI 773
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 124 bits (312), Expect = 2e-28
Identities = 67/145 (46%), Positives = 94/145 (64%)
Frame = +1
Query: 1148 KPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEE 1207
K VA+G+SQ G DYTETF+PV + IRL+L+ AI + + Q+D+ +AFLNG ++E
Sbjct: 244 KARLVAKGFSQTLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQE 423
Query: 1208 EVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFR 1267
EVY+ QP GFE + V KL KSLYGLKQAPRAWY+ L++ I+ F + + D +L
Sbjct: 424 EVYMSQPQGFE-AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLI 600
Query: 1268 RTLKKDILIVQIYVDDIIFGSTNAS 1292
+ + IYVDDI+ ++AS
Sbjct: 601 YNQNGACIYLXIYVDDILITGSSAS 675
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 122 bits (307), Expect = 8e-28
Identities = 72/214 (33%), Positives = 108/214 (49%), Gaps = 2/214 (0%)
Frame = +1
Query: 745 LELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEK 804
L+ +H DL+GP S G +Y + I+DD+ R WV F++ K+ F + ++++
Sbjct: 97 LDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRYKNETFPTFKKWRILVETQT 276
Query: 805 ELKILKVRSDYGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMI 864
+ K+ +D EF + F FC HGI + PR PQQNGV ER RTL E AR M+
Sbjct: 277 GKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQNGVAERMIRTLLERARCML 456
Query: 865 HENNL--AKHFWAEAVNTSCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQFGCTCYIL 922
L + W EA +T+C++ NR + K +++ G + S FGC Y L
Sbjct: 457 SNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWSGNLVDYSNLRIFGCPAYAL 636
Query: 923 NTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSE 956
K +A IFL Y+ SK YR++ S+
Sbjct: 637 VNDG---KLAPRAGECIFLSYASESKGYRLWCSD 729
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 116 bits (290), Expect = 8e-26
Identities = 82/247 (33%), Positives = 128/247 (51%)
Frame = -3
Query: 642 VNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKIS 701
V K D + K V N YK +F+ + S+N K +WH RLGH + R ++ +
Sbjct: 680 VTKGDLYMLEKLDPVSN-YKCSFTSSS--------SLN-KDALWHARLGHPHGRALNLM- 534
Query: 702 KLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASL 761
LP + + + C AC GK K+ F V + +L++ DL+ + S
Sbjct: 533 -------LPGVVFENKN-CEACILGKHCKNVFPRTSTVYENC-FDLIYTDLW-TAPSLSR 384
Query: 762 YGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDYGGEFEN 821
KY + +D+ S++TW+ I SKD + F +F + + KI +RSD GGE+ +
Sbjct: 383 DNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTS 204
Query: 822 EPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTS 881
F+ + HGILH+ S P TPQQNGV +RKN+ L E+AR+++ + N V+T+
Sbjct: 203 YAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQAN---------VSTA 51
Query: 882 CYIQNRI 888
CY+ N I
Sbjct: 50 CYLINWI 30
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 107 bits (266), Expect = 5e-23
Identities = 57/163 (34%), Positives = 92/163 (55%), Gaps = 2/163 (1%)
Frame = +1
Query: 1413 AVKRIFRYLKGTTNLGLLYRKSLDYK--LIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1470
A+K + +YL + L Y K+ + L G+ DADYAG+ RKS SG L IS
Sbjct: 4 ALKWVLKYLNESLKSSLKYTKAAQEEDALEGYVDADYAGNVDTRKSLSGFVFTLYGTTIS 183
Query: 1471 WASKRQATIAMSTAEAEYISAASCCTQLLWMKHQLEDYQINANSIPIYCDNTAAICLSKN 1530
W + +Q+ + +ST +AEYI+ +W+K + + I + I+CD+ +AI L+ +
Sbjct: 184 WKANQQSVVTLSTTQAEYIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANH 363
Query: 1531 PILHSRAKHIEIKHHFIRDYVQKGILDIQFIDIEHQWADIFTK 1573
+ H R KHI+I+ HFIRD ++ + ++ + E AD+FTK
Sbjct: 364 QVYHERTKHIDIRLHFIRDMIESKEIVVEKMASEENPADVFTK 492
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 102 bits (254), Expect(2) = 2e-22
Identities = 50/113 (44%), Positives = 69/113 (60%)
Frame = +1
Query: 842 TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTTYEL 901
TPQQNGV ER NRTL E R M+ +AK FWAEAV T+CY+ NR + KT E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 902 FKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYN 954
+KG+ + S H FGC Y++ K D K+++ IFLGY++ K Y +++
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
Score = 23.5 bits (49), Expect(2) = 2e-22
Identities = 8/22 (36%), Positives = 15/22 (67%)
Frame = +3
Query: 817 GEFENEPFELFCEKHGILHEFS 838
GE+ + F FC++ GI+ +F+
Sbjct: 9 GEYVDGEFLAFCKQEGIVRQFT 74
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 92.0 bits (227), Expect = 2e-18
Identities = 50/122 (40%), Positives = 73/122 (58%), Gaps = 3/122 (2%)
Frame = +1
Query: 1389 RPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLY---RKSLDYKLIGFCDA 1445
RP I +SV + ++F DPR+ HL A RI RY++GT GLL+ KS Y+LI + D+
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 1446 DYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEAEYISAASCCTQLLWMKHQL 1505
D+ GD R+STSG + ISW +K+Q A+S+ EAEYI+ Q LW+ +
Sbjct: 301 DWCGD---RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 1506 ED 1507
++
Sbjct: 472 KE 477
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 79.7 bits (195), Expect = 8e-15
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 3/125 (2%)
Frame = +1
Query: 1238 QAPRAWYDRLSNFLIKNDFERGQVDTTLFRR---TLKKDILIVQIYVDDIIFGSTNASLC 1294
Q+PR W+DR + + K + + Q D +F + T+KK ILIV YVDDI +
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIV--YVDDIFLTGDHGK*I 174
Query: 1295 K*FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTP 1354
K L+ +EFE+ +G LK+FLG+++ + K+G + Q KY +LLK+ ++ CK + P
Sbjct: 175 KRLKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDP 354
Query: 1355 MHPTC 1359
C
Sbjct: 355 YGCNC 369
Score = 50.4 bits (119), Expect = 5e-06
Identities = 24/56 (42%), Positives = 34/56 (59%)
Frame = +2
Query: 1347 DCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPAILFSVCLCARF 1402
D K TPM T L D GT+VD+ Y+ ++G L+YL+ +RP I F VC ++F
Sbjct: 332 DVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQF 499
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 79.3 bits (194), Expect = 1e-14
Identities = 54/213 (25%), Positives = 96/213 (44%), Gaps = 17/213 (7%)
Frame = -2
Query: 881 SCYIQNRIYIRPMLEKTTYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIF 940
+CY+ NRI R + ++ +E+ R+P+++Y FGC CY+L + K +A++++ +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 941 LGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDA------- 993
+GYS K Y+ Y+ E + V S VKF + + Q + T+D
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIEERGYYEEKNQEDLRDLTSDKAGVLRVILEG 345
Query: 994 ----SESDQPSDSEKYTEVESSPEAEYNSEAEPSPKVQNESASE-DFQDNTQQVI----- 1043
DQ + S + E + P A +P + +E SE + Q+N Q+ +
Sbjct: 344 LGIKMNQDQSTRSRQPEESSNEPR-----RAAQTPHLDHEGGSEPETQENGQEGVGLSEE 180
Query: 1044 QPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1076
+F S H E G ++ + Q+E
Sbjct: 179 GEEFNSGSHHQGEQDQGDEEHHSEAQEPHIQDE 81
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 68.9 bits (167), Expect = 1e-11
Identities = 39/104 (37%), Positives = 56/104 (53%)
Frame = -3
Query: 1383 LYLTASRPAILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGF 1442
+ LT P I FS+ L +R+ S P H +K I +YLKG ++GL Y K LIG+
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 1443 CDADYAGDRIERKSTSGNCQFLGENLISWASKRQATIAMSTAEA 1486
+A Y D + +S +G G +ISW S + +TIA S+ A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 65.5 bits (158), Expect = 2e-10
Identities = 31/71 (43%), Positives = 42/71 (58%)
Frame = +2
Query: 1519 CDNTAAICLSKNPILHSRAKHIEIKHHFIRDYVQKGILDIQFIDIEHQWADIFTKPLSVE 1578
CD +A L+ NP+ HSR KHI I HF+RD VQ+G L +Q + Q AD TKPLS
Sbjct: 29 CDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLSKS 208
Query: 1579 RFDFIKKNLNM 1589
R ++ + +
Sbjct: 209 RHQLLRNKIGV 241
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 62.0 bits (149), Expect = 2e-09
Identities = 38/96 (39%), Positives = 52/96 (53%)
Frame = -2
Query: 1168 FAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNGVIEEEVYVKQPPGFEDLKHPDHVY 1227
F P+ +L I LLS + L +DVK+AFL G + E++Y+ QP GF + V
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGF-S*EVGKMVG 378
Query: 1228 KLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDT 1263
KLKKS+YGLKQ PR L + F R ++ T
Sbjct: 377 KLKKSMYGLKQGPRQCI*SLKALCTRKGF-RSEIST 273
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 61.2 bits (147), Expect = 3e-09
Identities = 30/56 (53%), Positives = 40/56 (70%)
Frame = +2
Query: 1148 KPDFVAQGYSQQEGIDYTETFAPVARLEAIRLLLSYAINHGIILYQMDVKSAFLNG 1203
K VA+GY +Q+GID+ E FAPV R+E I LLL+ A +G ++ +DVK AFLNG
Sbjct: 155 KARLVAKGYVKQQGIDFDEVFAPVVRIETI*LLLALAATNGC*IHHIDVKIAFLNG 322
>BG587174 similar to PIR|A47759|A4775 retrovirus-related reverse transcriptase
homolog - rape retrotransposon copia-like (fragment),
partial (84%)
Length = 249
Score = 57.8 bits (138), Expect = 3e-08
Identities = 25/46 (54%), Positives = 33/46 (71%)
Frame = -1
Query: 1205 IEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNF 1250
+EE++Y+ QP GF DHV KL+KSLYGLKQ+PR WY R ++
Sbjct: 246 LEEKIYMTQPEGFLFPGKEDHVCKLRKSLYGLKQSPRQWYKRFDSY 109
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.332 0.143 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,576,748
Number of Sequences: 36976
Number of extensions: 711784
Number of successful extensions: 4420
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 3250
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 3548
length of query: 1594
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1485
effective length of database: 4,984,343
effective search space: 7401749355
effective search space used: 7401749355
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 65 (29.6 bits)
Medicago: description of AC137996.10