BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137994.3 - phase: 0
(155 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF634872 29 0.87
CA922772 weakly similar to GP|7211993|gb|A ESTs gb|T76367 and gb... 29 0.87
TC85627 similar to GP|8699168|gb|AAF78582.1| SAG101 {Arabidopsis... 27 3.3
TC80682 similar to GP|10086489|gb|AAG12549.1 Unknown Protein {Ar... 27 4.3
TC88159 weakly similar to PIR|T06678|T06678 hypothetical protein... 27 4.3
TC89288 weakly similar to GP|21740390|emb|CAD40869. OSJNBa0064H2... 27 4.3
TC77721 weakly similar to GP|16323167|gb|AAL15318.1 At1g30760/T5... 26 5.6
TC84334 weakly similar to PIR|T49308|T49308 hypothetical protein... 26 5.6
AW691206 similar to GP|14190429|gb| AT4g33220/F4I10_150 {Arabido... 26 7.4
TC88489 similar to GP|14334978|gb|AAK59666.1 unknown protein {Ar... 26 7.4
TC78349 weakly similar to PIR|F84551|F84551 probable glucanase [... 26 7.4
TC79115 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~un... 25 9.6
TC78398 weakly similar to PIR|T03274|T03274 hsr201 protein hype... 25 9.6
TC82508 similar to PIR|T50527|T50527 hypothetical protein T27I15... 25 9.6
BQ140771 similar to GP|13447074|gb| acetyl-CoA acetyl transferas... 25 9.6
TC85629 25 9.6
>BF634872
Length = 688
Score = 28.9 bits (63), Expect = 0.87
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -3
Query: 6 LWSTPLSSGEVFRPVVSEVQAPFVQQTTPIPQTGLP---FPQAAMTYSSPL 53
L ST LS+ E+FR VS ++ F + + + G+P F + A + + P+
Sbjct: 407 LLSTGLSTKEIFRAAVSSIEIVFGRVCSRLSSVGIPSLIFLETASSTADPI 255
>CA922772 weakly similar to GP|7211993|gb|A ESTs gb|T76367 and gb|AA404955
come from this gene. {Arabidopsis thaliana}, partial
(16%)
Length = 804
Score = 28.9 bits (63), Expect = 0.87
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -1
Query: 6 LWSTPLSSGEVFRPVVSEVQAPFVQQTTPIPQTGLP---FPQAAMTYSSPL 53
L ST LS+ E+FR VS ++ F + + + G+P F + A + + P+
Sbjct: 690 LLSTGLSTKEIFRAAVSSIEIVFGRVCSRLSSVGIPSLIFLETASSTADPI 538
>TC85627 similar to GP|8699168|gb|AAF78582.1| SAG101 {Arabidopsis thaliana},
partial (22%)
Length = 2267
Score = 26.9 bits (58), Expect = 3.3
Identities = 10/26 (38%), Positives = 17/26 (64%)
Frame = +1
Query: 78 QIRPHLEEKEWTKIFLKTLDQFYYDN 103
+++ H+ + EW K+ K LD YYD+
Sbjct: 1456 EMKRHMAQLEWYKMKTKNLDIGYYDS 1533
>TC80682 similar to GP|10086489|gb|AAG12549.1 Unknown Protein {Arabidopsis
thaliana}, partial (15%)
Length = 1374
Score = 26.6 bits (57), Expect = 4.3
Identities = 15/63 (23%), Positives = 26/63 (40%)
Frame = -2
Query: 38 TGLPFPQAAMTYSSPLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLD 97
T + P T S T + F+ K +A W ++PH+ W+ + K D
Sbjct: 1154 TRISLPDIHGTLSFNYTNLPQAQFR*IMKGFATWCCPNIITMQPHIMNFHWSCMPQKLND 975
Query: 98 QFY 100
+F+
Sbjct: 974 RFF 966
>TC88159 weakly similar to PIR|T06678|T06678 hypothetical protein T17F15.80 -
Arabidopsis thaliana, partial (9%)
Length = 2430
Score = 26.6 bits (57), Expect = 4.3
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 4 GYLWSTPLSSGEVFRPVVSEVQAPFVQQTTPIPQTGLPF 42
G S+P S PV+S A TTP P G PF
Sbjct: 2086 GSTGSSPFSPEMYRGPVLSSSPAVAYPPTTPFPYPGFPF 2202
>TC89288 weakly similar to GP|21740390|emb|CAD40869. OSJNBa0064H22.14 {Oryza
sativa}, partial (22%)
Length = 1358
Score = 26.6 bits (57), Expect = 4.3
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 1 MLEGYLWSTPLSSGEVFRPVVSEVQAPFVQQTTPIPQTGLPFPQ 44
+L+G L S+ L +V + V ++ V+ T P P+T LP P+
Sbjct: 880 LLKGKLISSTLMPNKVAKYPVPSLEIKGVE-TVPFPKTSLPLPK 752
>TC77721 weakly similar to GP|16323167|gb|AAL15318.1 At1g30760/T5I8_22
{Arabidopsis thaliana}, partial (47%)
Length = 1187
Score = 26.2 bits (56), Expect = 5.6
Identities = 23/76 (30%), Positives = 29/76 (37%)
Frame = +3
Query: 58 KESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLDQFYYDNMVASAPNNFAEMVT 117
K + K YFKA + DF Q+ P KIFL+ N + AE T
Sbjct: 336 KPTSKAYFKAKS----DFVRQVIPETSLNSLWKIFLQDEGPLMIWNPYGGMMSRIAESAT 503
Query: 118 MSMHLEEGVREGRLVK 133
H R+G L K
Sbjct: 504 PFPH-----RKGTLYK 536
>TC84334 weakly similar to PIR|T49308|T49308 hypothetical protein T16L24.220
- Arabidopsis thaliana, partial (14%)
Length = 804
Score = 26.2 bits (56), Expect = 5.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 61 FKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFLKTLD 97
F+T + WR+F IRP + +WT+I LK ++
Sbjct: 358 FRTRKRKLTDHWRNF---IRPLMWRLKWTEIRLKQIE 459
>AW691206 similar to GP|14190429|gb| AT4g33220/F4I10_150 {Arabidopsis
thaliana}, partial (13%)
Length = 531
Score = 25.8 bits (55), Expect = 7.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 73 RDFTAQIRPHLEEKEWTKIFLK 94
RD QI+ H EKEWT + K
Sbjct: 281 RDVNLQIQNHQIEKEWTLLLAK 216
>TC88489 similar to GP|14334978|gb|AAK59666.1 unknown protein {Arabidopsis
thaliana}, partial (47%)
Length = 1187
Score = 25.8 bits (55), Expect = 7.4
Identities = 15/58 (25%), Positives = 29/58 (49%), Gaps = 7/58 (12%)
Frame = +3
Query: 103 NMVASAPNNFAEMVTMSMHLEEG-------VREGRLVKENVPTDRSEDEDQEVNMVKR 153
N ++ P + E++T ++E V EG++V+ENV S +E + V++
Sbjct: 33 NFLSLYPQSL*EIMTAETMVQEEAQKVEVVVEEGKVVEENVEAKESMEESKPTKTVEK 206
>TC78349 weakly similar to PIR|F84551|F84551 probable glucanase [imported] -
Arabidopsis thaliana, partial (6%)
Length = 903
Score = 25.8 bits (55), Expect = 7.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 54 TQNDKESFKTYFKAYAQWWRDFTAQI 79
T + F+TYFK +WW T +I
Sbjct: 520 TSRQRSMFETYFK*DREWWSCCTDEI 597
>TC79115 similar to GP|10177075|dbj|BAB10517. gene_id:MKP11.15~unknown
protein {Arabidopsis thaliana}, partial (23%)
Length = 683
Score = 25.4 bits (54), Expect = 9.6
Identities = 11/42 (26%), Positives = 21/42 (49%)
Frame = +3
Query: 52 PLTQNDKESFKTYFKAYAQWWRDFTAQIRPHLEEKEWTKIFL 93
P ++ S +T QWWR Q++ HL+++ ++ L
Sbjct: 306 PSLAKNRRSIETLMGMIQQWWR----QLKFHLQDQNGSRFIL 419
>TC78398 weakly similar to PIR|T03274|T03274 hsr201 protein
hypersensitivity-related - common tobacco, partial (75%)
Length = 1669
Score = 25.4 bits (54), Expect = 9.6
Identities = 7/22 (31%), Positives = 11/22 (49%)
Frame = +2
Query: 71 WWRDFTAQIRPHLEEKEWTKIF 92
WW F + ++PH + W F
Sbjct: 542 WWFHFCSPVQPHYGRRSWHSSF 607
>TC82508 similar to PIR|T50527|T50527 hypothetical protein T27I15_150 -
Arabidopsis thaliana, partial (71%)
Length = 1761
Score = 25.4 bits (54), Expect = 9.6
Identities = 9/21 (42%), Positives = 14/21 (65%)
Frame = -2
Query: 32 TTPIPQTGLPFPQAAMTYSSP 52
+TP+P L +PQA +Y +P
Sbjct: 749 STPMPHNSLVYPQALASYYNP 687
>BQ140771 similar to GP|13447074|gb| acetyl-CoA acetyl transferase {Laccaria
bicolor}, partial (10%)
Length = 349
Score = 25.4 bits (54), Expect = 9.6
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 6 LWSTPLSSGEVFRPVVSEVQAPFVQQTTPIPQTGLPFPQA 45
L + +S+ +FRPV S TPI + G P +A
Sbjct: 149 LMALAMSTSSLFRPVFSRTTGMAAAGPTPISRGGTPTMEA 30
>TC85629
Length = 615
Score = 25.4 bits (54), Expect = 9.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 78 QIRPHLEEKEWTKIFLKTLDQFYYDN 103
++R H+ + EW + K LD YYD+
Sbjct: 380 EMRRHMAQLEWYRKKTKNLDIGYYDS 457
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,327,538
Number of Sequences: 36976
Number of extensions: 49630
Number of successful extensions: 320
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of query: 155
length of database: 9,014,727
effective HSP length: 88
effective length of query: 67
effective length of database: 5,760,839
effective search space: 385976213
effective search space used: 385976213
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC137994.3