TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137826.3 - phase: 0 /pseudo
         (1546 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644740 similar to PIR|A84460|A84 probable retroelement pol pol...    47  6e-05
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin...    37  0.002
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna...    33  1.1
BF521114 similar to PIR|T45723|T457 hypothetical protein F1P2.18...    30  7.3

>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
           [imported] - Arabidopsis thaliana, partial (4%)
          Length = 754

 Score = 47.0 bits (110), Expect = 6e-05
 Identities = 20/34 (58%), Positives = 26/34 (75%)
 Frame = -1

Query: 740 DSSMIMCKDYRQLNRVTTRNKYTLPLIDDLFNQL 773
           D    MC DYRQ N+VTT+NKY LP ID+LF+++
Sbjct: 211 DGYFRMCIDYRQFNKVTTKNKYPLPRIDNLFDKI 110


>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
           Ty3-Gypsy type {Oryza sativa}, partial (15%)
          Length = 716

 Score = 37.4 bits (85), Expect(2) = 0.002
 Identities = 18/34 (52%), Positives = 22/34 (63%)
 Frame = +2

Query: 740 DSSMIMCKDYRQLNRVTTRNKYTLPLIDDLFNQL 773
           D  + M  DY QLN V  + KY LPLID+LF+ L
Sbjct: 212 DGFLRMSIDYPQLNNVNIKIKYPLPLIDELFDNL 313



 Score = 23.9 bits (50), Expect(2) = 0.002
 Identities = 9/21 (42%), Positives = 14/21 (65%)
 Frame = +1

Query: 806 LWAL*VSSDIVWVDKCSFGCH 826
           +W+L*  SD+ WV+K   G +
Sbjct: 412 IWSL*NPSDVFWVNKSPDGIY 474


>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
           alternata}, partial (21%)
          Length = 1540

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 746 CKDYRQLNRVTTRNKYTLPLIDDLFNQL 773
           C DYR LN +T +++Y LPLI +   ++
Sbjct: 622 CVDYRALNAITKKDRYPLPLISETLRRV 705


>BF521114 similar to PIR|T45723|T457 hypothetical protein F1P2.180 -
           Arabidopsis thaliana, partial (24%)
          Length = 421

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 11/27 (40%), Positives = 18/27 (65%)
 Frame = -3

Query: 171 GSESEDTFKFILHYYERLNKLVIVKQY 197
           G ESED F+ ++HYY    K++++  Y
Sbjct: 197 GEESEDNFESLVHYYPYRYKMMVMPTY 117


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.359    0.161    0.583 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,228,474
Number of Sequences: 36976
Number of extensions: 811056
Number of successful extensions: 7389
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2120
Number of HSP's successfully gapped in prelim test: 289
Number of HSP's that attempted gapping in prelim test: 5128
Number of HSP's gapped (non-prelim): 2716
length of query: 1546
length of database: 9,014,727
effective HSP length: 109
effective length of query: 1437
effective length of database: 4,984,343
effective search space: 7162500891
effective search space used: 7162500891
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 65 (29.6 bits)