TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137823.6 + phase: 0 
         (217 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87423 weakly similar to GP|9758068|dbj|BAB08647.1 frnE protein...   439  e-124
CB892641 weakly similar to GP|9758068|dbj frnE protein-like {Ara...   390  e-109
BF644778 weakly similar to GP|9758068|dbj frnE protein-like {Ara...   284  2e-77
TC80020 weakly similar to GP|9759350|dbj|BAB10005.1 WD-repeat pr...    28  3.5
TC81100 similar to PIR|H84824|H84824 En/Spm-like transposon prot...    28  3.5

>TC87423 weakly similar to GP|9758068|dbj|BAB08647.1 frnE protein-like
           {Arabidopsis thaliana}, partial (94%)
          Length = 1169

 Score =  439 bits (1130), Expect = e-124
 Identities = 217/217 (100%), Positives = 217/217 (100%)
 Frame = +1

Query: 1   MTDTNSAHSEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDA 60
           MTDTNSAHSEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDA
Sbjct: 181 MTDTNSAHSEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDA 360

Query: 61  PKEGIEKREFYRSKFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQG 120
           PKEGIEKREFYRSKFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQG
Sbjct: 361 PKEGIEKREFYRSKFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQG 540

Query: 121 LDKQHDLVEELGLGYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKT 180
           LDKQHDLVEELGLGYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKT
Sbjct: 541 LDKQHDLVEELGLGYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKT 720

Query: 181 YSRNITGVPYYVINGSQKLSGGQPPEVFLRAFQAATS 217
           YSRNITGVPYYVINGSQKLSGGQPPEVFLRAFQAATS
Sbjct: 721 YSRNITGVPYYVINGSQKLSGGQPPEVFLRAFQAATS 831


>CB892641 weakly similar to GP|9758068|dbj frnE protein-like {Arabidopsis
           thaliana}, partial (87%)
          Length = 778

 Score =  390 bits (1001), Expect = e-109
 Identities = 196/209 (93%), Positives = 200/209 (94%)
 Frame = +2

Query: 9   SEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKR 68
           SEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKR
Sbjct: 2   SEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDAPKEGIEKR 181

Query: 69  EFYRSKFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQGLDKQHDLV 128
           EFYRSKFGSRSDQMEARMSE  R+  L +  + + GNTMDSHRLIYFSGQQGLDKQHDLV
Sbjct: 182 EFYRSKFGSRSDQMEARMSEDSRSC-L*FVRTHVRGNTMDSHRLIYFSGQQGLDKQHDLV 358

Query: 129 EELGLGYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKTYSRNITGV 188
           EELGLGYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKTYSRNITGV
Sbjct: 359 EELGLGYFTQEKYIGDQEFLLEAAAKVGIEGAEEFLKNPNNGLKEVEEELKTYSRNITGV 538

Query: 189 PYYVINGSQKLSGGQPPEVFLRAFQAATS 217
           PYYVINGSQKLSGGQPPEVFLRAFQAATS
Sbjct: 539 PYYVINGSQKLSGGQPPEVFLRAFQAATS 625


>BF644778 weakly similar to GP|9758068|dbj frnE protein-like {Arabidopsis
           thaliana}, partial (58%)
          Length = 520

 Score =  284 bits (727), Expect = 2e-77
 Identities = 138/139 (99%), Positives = 138/139 (99%)
 Frame = +2

Query: 1   MTDTNSAHSEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDA 60
           MTDTNSAHSEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDA
Sbjct: 104 MTDTNSAHSEKKLVRIDISSDTVCPWCFVGKKNLDKAIASSKDKYNFEILWHPYQLSPDA 283

Query: 61  PKEGIEKREFYRSKFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQG 120
           PKEGIEKREFYRSKFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQG
Sbjct: 284 PKEGIEKREFYRSKFGSRSDQMEARMSEVFRTVGLVYSLSGLTGNTMDSHRLIYFSGQQG 463

Query: 121 LDKQHDLVEELGLGYFTQE 139
           LDKQHDLVEELGLGYFT E
Sbjct: 464 LDKQHDLVEELGLGYFTXE 520


>TC80020 weakly similar to GP|9759350|dbj|BAB10005.1 WD-repeat protein-like
           {Arabidopsis thaliana}, partial (13%)
          Length = 706

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 36  KAIASSKDKYNFEILWHPYQLSPD 59
           KAI SS D     ++WHP  L PD
Sbjct: 156 KAI*SSPDSDERPVIWHPRPLKPD 85


>TC81100 similar to PIR|H84824|H84824 En/Spm-like transposon protein
           [imported] - Arabidopsis thaliana, partial (20%)
          Length = 1266

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 128 VEELGLGYFTQEKYIGDQEFLLEA--AAKVGIEGAEEFLKNPNNGLKEVEEELK 179
           VE L +G    +   G     +E   A +VG+EG E+F+   N GL +  E+L+
Sbjct: 910 VEALEVGLVGVDDLTGGAVDFVEVNVAREVGVEGLEDFVVEGNVGLPDGVEDLE 749


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.314    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,898,651
Number of Sequences: 36976
Number of extensions: 68799
Number of successful extensions: 274
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of query: 217
length of database: 9,014,727
effective HSP length: 92
effective length of query: 125
effective length of database: 5,612,935
effective search space: 701616875
effective search space used: 701616875
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)