BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137823.5 - phase: 0
(121 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG448314 similar to GP|6041806|gb| unknown protein {Arabidopsis ... 168 5e-43
CB895165 similar to PIR|T47697|T47 Regulator of chromosome conde... 45 7e-06
TC81301 similar to PIR|T50662|T50662 UVB-resistance protein UVR8... 40 2e-04
TC89578 homologue to GP|17105108|gb|AAL35561.1 protamine P1 {Cyn... 39 4e-04
TC83127 similar to PIR|T47697|T47697 Regulator of chromosome con... 38 0.001
TC91034 similar to GP|20161135|dbj|BAB90063. hypothetical protei... 38 0.001
TC87759 similar to PIR|T51387|T51387 UVB-resistance protein-like... 37 0.002
TC89197 similar to GP|10177674|dbj|BAB11034. UVB-resistance prot... 35 0.009
AL386293 weakly similar to GP|4079809|gb| HERC2 {Homo sapiens}, ... 34 0.015
TC87758 similar to PIR|T51387|T51387 UVB-resistance protein-like... 33 0.020
TC83393 similar to GP|15795108|dbj|BAB02372. gene_id:MJK13.9~unk... 32 0.045
TC85759 similar to PIR|T48072|T48072 dTDP-glucose 4-6-dehydratas... 32 0.076
TC81917 similar to GP|10176914|dbj|BAB10107. contains similarity... 31 0.099
TC92196 similar to GP|16604485|gb|AAL24248.1 AT5g11580/F15N18_17... 30 0.17
TC89781 similar to GP|8843819|dbj|BAA97367.1 light-inducible pro... 30 0.22
TC80303 weakly similar to GP|20161135|dbj|BAB90063. hypothetical... 30 0.29
AW696803 similar to GP|14586365|e putative protein {Arabidopsis ... 29 0.38
AW696669 29 0.49
BI312094 similar to PIR|D86397|D863 protein T7N9.12 [imported] -... 28 0.64
BQ144301 similar to GP|15277263|db alternative name: G2~unknown ... 28 0.84
>BG448314 similar to GP|6041806|gb| unknown protein {Arabidopsis thaliana},
partial (28%)
Length = 506
Score = 168 bits (425), Expect = 5e-43
Identities = 81/87 (93%), Positives = 81/87 (93%)
Frame = +1
Query: 1 MDIDAILGTTKPVAASIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGL 60
MDIDA LGTTKPVA SIPRKSAIYVWGYN SGQTGRKEKDDQLRIPKQLP LFGCPAGL
Sbjct: 67 MDIDAXLGTTKPVAXSIPRKSAIYVWGYNXSGQTGRKEKDDQLRIPKQLPXXLFGCPAGL 246
Query: 61 NTRWLDIACGREHTAAIASDGLLFTWG 87
NTRWLDIACGREHTAAIASDGLLFT G
Sbjct: 247 NTRWLDIACGREHTAAIASDGLLFTRG 327
>CB895165 similar to PIR|T47697|T47 Regulator of chromosome condensation-like
protein - Arabidopsis thaliana, partial (31%)
Length = 853
Score = 45.1 bits (105), Expect = 7e-06
Identities = 24/65 (36%), Positives = 34/65 (51%)
Frame = +2
Query: 23 IYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGL 82
+Y +G NQ GQ G DQ + P+L CP+ N I+CG HTA + +G
Sbjct: 167 VYAFGGNQFGQLGTGS--DQA----ETLPRLLDCPSLENVNVKTISCGARHTALVTDNGK 328
Query: 83 LFTWG 87
+F+WG
Sbjct: 329 VFSWG 343
Score = 27.7 bits (60), Expect = 1.1
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Frame = +2
Query: 22 AIYVWGYNQSGQTGRKEKDDQLR---IPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIA 78
A+ +G+ GQ G+ DD+L + L Q+ G AGL W HT +
Sbjct: 8 AVLAFGWGLYGQCGQGSTDDELSPTCVSSLLGIQIEGVAAGL---W--------HTVCTS 154
Query: 79 SDGLLFTWG 87
+DG ++ +G
Sbjct: 155ADGDVYAFG 181
>TC81301 similar to PIR|T50662|T50662 UVB-resistance protein UVR8 [imported]
- Arabidopsis thaliana, partial (70%)
Length = 1253
Score = 40.0 bits (92), Expect = 2e-04
Identities = 24/73 (32%), Positives = 39/73 (52%), Gaps = 1/73 (1%)
Frame = +1
Query: 16 SIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLF-GCPAGLNTRWLDIACGREHT 74
++ + + WG NQ+GQ G +D L +P+++ Q F G P + +A G EH+
Sbjct: 664 AVTMEGEVQSWGRNQNGQLGLGTTEDSL-VPQKI--QTFQGVPIKM------VAAGAEHS 816
Query: 75 AAIASDGLLFTWG 87
AI +G L+ WG
Sbjct: 817 VAITENGELYGWG 855
Score = 37.4 bits (85), Expect = 0.001
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +1
Query: 14 AASIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREH 73
+ +I +Y WG+ + G G +++D+ IP+++ + + +ACG H
Sbjct: 814 SVAITENGELYGWGWGRYGNLGLGDRNDRC-IPEKVSVDC--------DKMVLVACGWRH 966
Query: 74 TAAIASDGLLFTWG 87
T +++S G L+T+G
Sbjct: 967 TISVSSSGELYTYG 1008
Score = 35.4 bits (80), Expect = 0.005
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 26 WGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGL-LF 84
WG + GQ G + DD+L LP QL A + + + CG +HT A + + ++
Sbjct: 378 WGRGEDGQLGHGDTDDRL-----LPTQLSALDA---QQIVSVVCGADHTLAYSESKVEVY 533
Query: 85 TWG 87
+WG
Sbjct: 534 SWG 542
Score = 31.6 bits (70), Expect = 0.076
Identities = 20/72 (27%), Positives = 35/72 (47%)
Frame = +1
Query: 16 SIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTA 75
S+ +Y +G+++ GQ G + D L +P +L Q F + ++ G HT
Sbjct: 973 SVSSSGELYTYGWSKYGQLGHGDCKDHL-VPHKL--QAFS-----DKLICQVSGGWRHTM 1128
Query: 76 AIASDGLLFTWG 87
A+ + G L+ WG
Sbjct: 1129 ALTTGGQLYGWG 1164
>TC89578 homologue to GP|17105108|gb|AAL35561.1 protamine P1 {Cynocephalus
variegatus}, partial (36%)
Length = 680
Score = 39.3 bits (90), Expect = 4e-04
Identities = 24/86 (27%), Positives = 39/86 (44%), Gaps = 2/86 (2%)
Frame = +1
Query: 4 DAILGTTKPVAASIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAG--LN 61
DA+L + S +YV G + G+ G +++ Q R F C G +
Sbjct: 427 DAVLSKYHTAILTTDPVSNLYVCGVGRGGRLGLGDENTQFR---------FACVQGGLAD 579
Query: 62 TRWLDIACGREHTAAIASDGLLFTWG 87
+ + +A G+ HT A+ G L+TWG
Sbjct: 580 RKVMQVALGQNHTMAVTDAGELWTWG 657
>TC83127 similar to PIR|T47697|T47697 Regulator of chromosome
condensation-like protein - Arabidopsis thaliana,
partial (46%)
Length = 1208
Score = 37.7 bits (86), Expect = 0.001
Identities = 29/92 (31%), Positives = 40/92 (42%), Gaps = 7/92 (7%)
Frame = +3
Query: 3 IDAILGT-TKPVAAS------IPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFG 55
+ ++LGT K +AA + +Y +G NQ GQ G D PK L
Sbjct: 513 VPSLLGTRVKQIAAGLWHTLCVTANGQLYAFGGNQFGQLGTGN-DQTETSPKLLD----- 674
Query: 56 CPAGLNTRWLDIACGREHTAAIASDGLLFTWG 87
N ++CG H+A + DG LFTWG
Sbjct: 675 --TFENNLSSIVSCGARHSALLTDDGHLFTWG 764
Score = 29.6 bits (65), Expect = 0.29
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 23 IYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIA 78
++ WG+N+ GQ G + D+ IP ++ + GC R ++ACG HT +A
Sbjct: 750 LFTWGWNKYGQLGLGDSVDR-NIPSRV--SISGC------RPRNVACGWWHTLLMA 890
Score = 29.3 bits (64), Expect = 0.38
Identities = 22/84 (26%), Positives = 28/84 (33%), Gaps = 18/84 (21%)
Frame = +3
Query: 23 IYVWGYNQSGQTGRKEKDDQLRIPK----------------QLPPQLFGCPAGLNTRWLD 66
++ WGY GQ G + + P Q C +
Sbjct: 210 VWGWGYGGEGQLGLGSRVKMVSSPHLISCIESASGKDKSSFQQGSTALQCSNVAGNYVTE 389
Query: 67 IACGREHTAAIASDGLLFT--WGL 88
IACG H+A I G L T WGL
Sbjct: 390 IACGGRHSAVITDTGALLTFGWGL 461
>TC91034 similar to GP|20161135|dbj|BAB90063. hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (16%)
Length = 639
Score = 37.7 bits (86), Expect = 0.001
Identities = 23/65 (35%), Positives = 33/65 (50%)
Frame = +3
Query: 23 IYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGL 82
+Y WG G+ G + DQL P Q+ FG + R + IA G H+ A+A DG
Sbjct: 165 VYSWGRGTLGRLGLGSEQDQL-FPAQVK---FGSQESI--RIVGIAAGAYHSLALADDGS 326
Query: 83 LFTWG 87
++ WG
Sbjct: 327 VWCWG 341
>TC87759 similar to PIR|T51387|T51387 UVB-resistance protein-like -
Arabidopsis thaliana, partial (51%)
Length = 976
Score = 36.6 bits (83), Expect = 0.002
Identities = 21/72 (29%), Positives = 35/72 (48%)
Frame = +3
Query: 16 SIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTA 75
++ ++ WG N+ GQ G + P+ P + G +GL +DIA G H+
Sbjct: 87 ALQEDGTLWAWGNNEYGQLGTGDTQ-----PRSQPVPVQGL-SGLTV--VDIAAGGWHST 242
Query: 76 AIASDGLLFTWG 87
A+ DG ++ WG
Sbjct: 243 ALTDDGEVYGWG 278
Score = 26.2 bits (56), Expect = 3.2
Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Frame = +3
Query: 14 AASIPRKSAIYVWGYNQSGQTGRKEK---DDQLRIPKQLPP--QLFGCPAGLNTRWLD-- 66
+ ++ R I+ +G G+ G K + +P +PP L W+
Sbjct: 399 SVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPMEVPIDIPPPQNLGDADGEAEGNWIAKL 578
Query: 67 IACGREHTAAI 77
+ACG HT AI
Sbjct: 579 VACGGRHTLAI 611
>TC89197 similar to GP|10177674|dbj|BAB11034. UVB-resistance protein UVR8
{Arabidopsis thaliana}, partial (74%)
Length = 1457
Score = 34.7 bits (78), Expect = 0.009
Identities = 21/62 (33%), Positives = 30/62 (47%)
Frame = +3
Query: 26 WGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGLLFT 85
WG NQ+G+ G D +P+++ A R +A G EH+ AI DG L+
Sbjct: 285 WGRNQNGELGLGTTKDS-HVPQKIL-------AFEGIRIKMVAAGAEHSVAITEDGDLYG 440
Query: 86 WG 87
WG
Sbjct: 441 WG 446
Score = 33.9 bits (76), Expect = 0.015
Identities = 20/74 (27%), Positives = 38/74 (51%)
Frame = +3
Query: 14 AASIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREH 73
+ +I +Y WG+ + G G + +D+L IP+++ + + ++CG H
Sbjct: 405 SVAITEDGDLYGWGWGRYGNLGLGDTNDRL-IPEKVNID--------GDKIVMVSCGWRH 557
Query: 74 TAAIASDGLLFTWG 87
T +I+S G L+T G
Sbjct: 558 TISISSSGGLYTHG 599
Score = 30.4 bits (67), Expect = 0.17
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +3
Query: 26 WGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGL-LF 84
WG + GQ G + DD+L LP +L A + + CG ++T A + G ++
Sbjct: 117 WGRGEDGQLGHGDTDDRL-----LPTKL---SAFDGQDIVSVTCGADYTVARSKSGKDVY 272
Query: 85 TWG 87
+WG
Sbjct: 273 SWG 281
Score = 26.6 bits (57), Expect = 2.4
Identities = 16/65 (24%), Positives = 27/65 (40%)
Frame = +3
Query: 23 IYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGL 82
++ WG+N+ GQ G D P L P + ++ G HT A+
Sbjct: 741 LFGWGWNKFGQIGIGHNFDCSS------PMLVNFPHAQKV--VQMSSGWRHTVAVTDRAN 896
Query: 83 LFTWG 87
+++WG
Sbjct: 897 VYSWG 911
>AL386293 weakly similar to GP|4079809|gb| HERC2 {Homo sapiens}, partial (1%)
Length = 528
Score = 33.9 bits (76), Expect = 0.015
Identities = 21/74 (28%), Positives = 32/74 (42%)
Frame = +3
Query: 14 AASIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREH 73
+A I +Y +G+N G+ G D + + FG + L +ACG H
Sbjct: 147 SAVITDSGDLYTFGWNHFGRLGISSGKDSMMNCAEPSLIEFGEENDIELNVLKVACGSAH 326
Query: 74 TAAIASDGLLFTWG 87
T AI D L++ G
Sbjct: 327 TVAITDDYRLWSCG 368
Score = 26.9 bits (58), Expect = 1.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 66 DIACGREHTAAIASDGLLFTWG 87
+IACG H+A I G L+T+G
Sbjct: 123 EIACGGFHSAVITDSGDLYTFG 188
>TC87758 similar to PIR|T51387|T51387 UVB-resistance protein-like -
Arabidopsis thaliana, partial (62%)
Length = 894
Score = 33.5 bits (75), Expect = 0.020
Identities = 22/69 (31%), Positives = 30/69 (42%), Gaps = 2/69 (2%)
Frame = +1
Query: 21 SAIYVWGYNQSGQTGRKEKDDQLRI--PKQLPPQLFGCPAGLNTRWLDIACGREHTAAIA 78
S I WG + GQ G +D+ + K LP Q + G ++ AI
Sbjct: 70 SNIIAWGSGEDGQLGIGTNEDKEWVCSVKALPSQ----------HVRSVVAGSRNSLAIL 219
Query: 79 SDGLLFTWG 87
+DG LFTWG
Sbjct: 220 NDGKLFTWG 246
Score = 30.8 bits (68), Expect = 0.13
Identities = 17/65 (26%), Positives = 26/65 (39%)
Frame = +1
Query: 23 IYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGL 82
++ WG+NQ G G + IP Q+ A + + A G H A+ G
Sbjct: 232 LFTWGWNQRGTLGHPAETKTENIPSQV-------KALSHAHIVQAAIGGWHCLAVDDHGK 390
Query: 83 LFTWG 87
+ WG
Sbjct: 391 AYAWG 405
>TC83393 similar to GP|15795108|dbj|BAB02372. gene_id:MJK13.9~unknown
protein {Arabidopsis thaliana}, partial (59%)
Length = 1018
Score = 32.3 bits (72), Expect = 0.045
Identities = 22/79 (27%), Positives = 43/79 (53%)
Frame = +3
Query: 16 SIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTA 75
S+ ++Y +G + G E+ D+L +P+ + Q F G++ + ++ G EH A
Sbjct: 339 SVTEGGSVYSFGSGSNFCLGHGEQHDEL-LPRCI--QKFR-RNGIHV--VHVSAGDEHAA 500
Query: 76 AIASDGLLFTWGLDFSYSL 94
A+ S+G ++TWG + +L
Sbjct: 501 ALDSNGFVYTWGKGYCGAL 557
>TC85759 similar to PIR|T48072|T48072 dTDP-glucose 4-6-dehydratase homolog D18
- Arabidopsis thaliana, partial (84%)
Length = 1796
Score = 31.6 bits (70), Expect = 0.076
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 95 LVLLIVHDFIYSFKNCFIVLELFFY 119
L+ + HDFIY F +I+L LFF+
Sbjct: 1644 LIAIASHDFIYQFPAIYIILSLFFW 1718
>TC81917 similar to GP|10176914|dbj|BAB10107. contains similarity to
regulator of chromosome condensation~gene_id:MAE1.11
{Arabidopsis thaliana}, partial (29%)
Length = 394
Score = 31.2 bits (69), Expect = 0.099
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 26 WGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGLLFT 85
WG+ GQ G ++Q +IP + A + + I+CG +AA+ +G L+
Sbjct: 143 WGHGGQGQLGHGSVENQ-KIPTLVE-------AIAHEHIIYISCGGASSAAVTDEGKLYM 298
Query: 86 WG 87
WG
Sbjct: 299 WG 304
>TC92196 similar to GP|16604485|gb|AAL24248.1 AT5g11580/F15N18_170
{Arabidopsis thaliana}, partial (34%)
Length = 1213
Score = 30.4 bits (67), Expect = 0.17
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +1
Query: 24 YVWGYNQSGQTGRKEKDDQL--RIPKQLPPQLFGCPAGLNTRW--LDIACGREHTAAIA 78
Y WGYN GQ G ++ +L + K L + + W ++ACG HTA +A
Sbjct: 877 YSWGYNSHGQLGLGDRQSRLHPEVVKILDEE---------SPWTIYEVACGAFHTALLA 1026
>TC89781 similar to GP|8843819|dbj|BAA97367.1 light-inducible protein
ATLS1-like {Arabidopsis thaliana}, complete
Length = 610
Score = 30.0 bits (66), Expect = 0.22
Identities = 14/57 (24%), Positives = 32/57 (55%)
Frame = +1
Query: 63 RWLDIACGREHTAAIASDGLLFTWGLDFSYSLLVLLIVHDFIYSFKNCFIVLELFFY 119
+WL++ HT A++ +F +D+ Y + +++V+++I KN ++L F+
Sbjct: 427 QWLNLLISLSHTWAVSQGKNIFHLSVDY-YKFVCVIVVNEYI*YMKNRKMILLCHFH 594
>TC80303 weakly similar to GP|20161135|dbj|BAB90063. hypothetical protein
{Oryza sativa (japonica cultivar-group)}, partial (19%)
Length = 789
Score = 29.6 bits (65), Expect = 0.29
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 65 LDIACGREHTAAIASDGLLFTWGLD 89
+ + CG HT ++SDG +++WG++
Sbjct: 72 VSVDCGLFHTCVVSSDGDVWSWGME 146
>AW696803 similar to GP|14586365|e putative protein {Arabidopsis thaliana},
partial (18%)
Length = 618
Score = 29.3 bits (64), Expect = 0.38
Identities = 19/65 (29%), Positives = 30/65 (45%)
Frame = +3
Query: 23 IYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHTAAIASDGL 82
+Y G GQ G + D +L P ++ +L L + +IACG H A +
Sbjct: 249 VYAMGSPVYGQLGNPQADGKL--PTRVEGKL------LKSFVEEIACGAYHVAVLTLRNE 404
Query: 83 LFTWG 87
++TWG
Sbjct: 405 VYTWG 419
Score = 28.1 bits (61), Expect = 0.84
Identities = 18/63 (28%), Positives = 28/63 (43%)
Frame = +3
Query: 15 ASIPRKSAIYVWGYNQSGQTGRKEKDDQLRIPKQLPPQLFGCPAGLNTRWLDIACGREHT 74
A + ++ +Y WG +G+ G + DD+ P L + + IACG T
Sbjct: 381 AVLTLRNEVYTWGKGANGRLGHGDTDDRNN------PTLVDALKDKHVK--SIACGTNFT 536
Query: 75 AAI 77
AAI
Sbjct: 537 AAI 545
>AW696669
Length = 491
Score = 28.9 bits (63), Expect = 0.49
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +2
Query: 91 SYSLLVLLI---VHDFIYSFKNCFIVLELFFYDT 121
SY L+++ I +H +I+SF NC V+ L F T
Sbjct: 272 SYFLILVFIAWFIHKWIFSFSNCLPVILLLFAST 373
>BI312094 similar to PIR|D86397|D863 protein T7N9.12 [imported] - Arabidopsis
thaliana, partial (14%)
Length = 728
Score = 28.5 bits (62), Expect = 0.64
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 62 TRWLDIACGREHTAAIASDGLLFTWG 87
T+ DIA G EH+ + +G + TWG
Sbjct: 207 TKITDIATGAEHSVLVTENGEIKTWG 284
>BQ144301 similar to GP|15277263|db alternative name: G2~unknown function
{Homo sapiens}, partial (1%)
Length = 1250
Score = 28.1 bits (61), Expect = 0.84
Identities = 29/92 (31%), Positives = 46/92 (49%), Gaps = 16/92 (17%)
Frame = +1
Query: 23 IYVWGYNQSGQTGRKEKDDQLRIP--KQLPPQL--FGCPAGLNTR---WLDIAC----GR 71
+++WG + G+ GR +++ +R+P L P L + PA L R W +A GR
Sbjct: 427 LWLWGCRRKGRWGRSRQENGMRVPGGDVLMPYLPRYWRPAFLIWRGCFWFIVALRRFGGR 606
Query: 72 EHT-----AAIASDGLLFTWGLDFSYSLLVLL 98
+ AI S GL +W FSY+ +V+L
Sbjct: 607 DFVFLLIFLAIIS-GLCASW---FSYACVVML 690
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.143 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,460,897
Number of Sequences: 36976
Number of extensions: 65185
Number of successful extensions: 551
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of query: 121
length of database: 9,014,727
effective HSP length: 84
effective length of query: 37
effective length of database: 5,908,743
effective search space: 218623491
effective search space used: 218623491
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)
Medicago: description of AC137823.5