TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137702.3 - phase: 2 /pseudo
         (899 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE941280 weakly similar to GP|20197614|g unknown protein {Arabid...   167  2e-41
BG587143 weakly similar to PIR|A96586|A9 hypothetical protein F2...   149  6e-36
CA859513                                                               45  2e-04
TC92104 similar to PIR|D86151|D86151 hypothetical protein AAF764...    33  0.49
TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AA...    33  0.49
AW685809 similar to PIR|E84792|E8 probable kinesin heavy chain [...    31  2.4
BF647954 homologue to GP|11094192|db 26S proteasome regulatory p...    30  3.2
TC86357 similar to GP|10177127|dbj|BAB10417. 3-dehydroquinate sy...    30  5.4
BQ143863                                                               29  7.0
TC82119 homologue to GP|10178044|dbj|BAB11527. gene_id:MUG13.9~u...    29  7.0
TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AA...    29  9.2
TC91937 similar to GP|22136032|gb|AAM91598.1 GTP-binding protein...    29  9.2
TC88953 weakly similar to GP|10278525|emb|CAC09649. unnamed prot...    29  9.2

>BE941280 weakly similar to GP|20197614|g unknown protein {Arabidopsis
           thaliana}, partial (8%)
          Length = 403

 Score =  167 bits (422), Expect = 2e-41
 Identities = 82/105 (78%), Positives = 89/105 (84%)
 Frame = -1

Query: 759 LYGYGGTGKTFILRALSSAVRSRKEIVLTVASSGIAALLIPGGRTAHSRFGIPIIVDEIS 818
           LY YGGT KTFI RALS+A+RS  EIVL  ASSGI ALL+PGGRTAHSRFGIP I+DE S
Sbjct: 403 LYDYGGTEKTFIWRALSAALRSEGEIVLACASSGIDALLMPGGRTAHSRFGIPFIIDETS 224

Query: 819 TCGIHPKSPLAKLVCKAKLIIWDEAPMMHKHCFEALDRSLRDILR 863
            CG+ P  PLA LV KAKLIIWDEAPMMHKHCFEALDRSLRD+L+
Sbjct: 223 MCGVTPNIPLASLVIKAKLIIWDEAPMMHKHCFEALDRSLRDVLK 89


>BG587143 weakly similar to PIR|A96586|A9 hypothetical protein F20D21.24
           [imported] - Arabidopsis thaliana, partial (12%)
          Length = 717

 Score =  149 bits (375), Expect = 6e-36
 Identities = 67/141 (47%), Positives = 96/141 (67%)
 Frame = -3

Query: 301 QIDKIISAEIPDKNRDPKLYEIVASLMIHGPCGPQNKSSPCILIKKCTKYFPKKFVDNTV 360
           ++D+IISAE+P+K +DP+ Y +V   MIHGPCG  N  SPC+    CTK +P+ +  +T 
Sbjct: 499 EVDEIISAELPNKKQDPEAYNLVTKHMIHGPCGVINPKSPCMENNVCTKKYPRPYNGSTS 320

Query: 361 IDSDGYPVYRRRDNGVFIKKKGESFVDNRWVVPYNRKLMLKYNAHINVEWCNQSRSIKYL 420
           ID  GY +YRRR N      K  + ++N ++VP+N KL+ KY AHIN+EWCN++ ++KYL
Sbjct: 319 IDKSGYVLYRRR*NETEHVVKNGAILNNTFIVPHNIKLLKKYEAHINMEWCNRTSAVKYL 140

Query: 421 FKYVNKGHDRVTATFYQGGDA 441
           FKY+ KG DRV+    +G  A
Sbjct: 139 FKYITKGVDRVSVVIEKGNPA 77


>CA859513 
          Length = 363

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 19/40 (47%), Positives = 26/40 (64%)
 Frame = +1

Query: 303 DKIISAEIPDKNRDPKLYEIVASLMIHGPCGPQNKSSPCI 342
           D  +SAE+ D     +LY+ V S+MIHGP GP N + PC+
Sbjct: 208 DTFVSAELSDPVEQLRLYQTVVSVMIHGPYGPFNNNVPCM 327


>TC92104 similar to PIR|D86151|D86151 hypothetical protein AAF76473.1
           [imported] - Arabidopsis thaliana, partial (10%)
          Length = 462

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 18/41 (43%), Positives = 21/41 (50%), Gaps = 4/41 (9%)
 Frame = +2

Query: 733 TMTAEQKNVYE----KIISRVDDNLPGIFFLYGYGGTGKTF 769
           T +A QK VYE     ++  V D   G    YG  GTGKTF
Sbjct: 320 TQSASQKRVYEVVAKPVVESVLDGYNGTVMAYGQTGTGKTF 442


>TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AAA-ATPase
           subunit RPT4a-like protein {Arabidopsis thaliana},
           complete
          Length = 1640

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 8/128 (6%)
 Frame = +2

Query: 702 SLIHESRNRLIYDELN-YNQQLLEIEHKKLMSTMTAEQKNVYEKIISRVDDNLPGIFFLY 760
           +++HE    + Y  +   + Q+ E+     +  M  E       +  RV    P    LY
Sbjct: 449 NMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPE-------LFLRVGIKPPKGVLLY 607

Query: 761 GYGGTGKTFILRALSSAVRSRKEIVLTVASSGIAALLIPGGRTAHSRFGIP-------II 813
           G  GTGKT + RA++S + +    +  V+S+ I   +    R     FG         I 
Sbjct: 608 GPPGTGKTLLARAIASNIDA--NFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIF 781

Query: 814 VDEISTCG 821
           +DEI   G
Sbjct: 782 MDEIDAIG 805


>AW685809 similar to PIR|E84792|E8 probable kinesin heavy chain [imported] -
           Arabidopsis thaliana, partial (14%)
          Length = 651

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
 Frame = +2

Query: 681 LLRSHGKSMKEDYPTMPRTDISLIHESRNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKN 740
           LLR    S +E    +P+  +   +E++  +       N+Q+ ++ +   +    ++Q++
Sbjct: 263 LLRCRPLSDEEQRSNVPK--VVSCNENKREVTVMHTIANKQVEKVFNFDKVFGPKSQQRS 436

Query: 741 VYEK----IISRVDDNLPGIFFLYGYGGTGKTFIL 771
           +Y++    I++ V D      F YG  GTGKT+ +
Sbjct: 437 IYDQAIAPIVNEVLDGFNCTVFAYGQTGTGKTYTM 541


>BF647954 homologue to GP|11094192|db 26S proteasome regulatory particle
           triple-A ATPase subunit4 {Oryza sativa (japonica
           cultivar-group)}, partial (53%)
          Length = 649

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
 Frame = +2

Query: 744 KIISRVDDNLPGIFFLYGYGGTGKTFILRALSSAVRSRKEIVLTVASSGIAALLIPGGRT 803
           ++  RV    P    LYG  GTGKT + RA++S + +    +  V+S+ I   +    R 
Sbjct: 11  ELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDA--NFLKVVSSAIIDKYIGESSRL 184

Query: 804 AHSRFGIP-------IIVDEISTCG 821
               FG         I +DEI   G
Sbjct: 185 IREMFGYARDHQPCIIFMDEIDAIG 259


>TC86357 similar to GP|10177127|dbj|BAB10417. 3-dehydroquinate synthase-like
           protein {Arabidopsis thaliana}, partial (71%)
          Length = 1210

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 15/29 (51%), Positives = 18/29 (61%)
 Frame = +1

Query: 498 ADVIKKPHIRDTKFIAWFEANQKYPEARD 526
           A+VIK   IRDT+F  W E N +   ARD
Sbjct: 430 AEVIKYGLIRDTEFFEWQEKNMQALMARD 516


>BQ143863 
          Length = 381

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 325 SLMIHGPCGPQNKSSPCILIKKCTKYFPKKFVDNTVIDSDG 365
           S+  H P  P+  S  CI I  C   F  ++  N + ++DG
Sbjct: 179 SIRFHAPIPPRPLSYFCIPISPCLSAFRYRYFTNEISENDG 301


>TC82119 homologue to GP|10178044|dbj|BAB11527. gene_id:MUG13.9~unknown
           protein {Arabidopsis thaliana}, partial (4%)
          Length = 589

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/45 (35%), Positives = 24/45 (52%)
 Frame = -1

Query: 668 SQLKNYTLAEIDRLLRSHGKSMKEDYPTMPRTDISLIHESRNRLI 712
           S L N T   I  LLR +  S+ +D+   P    SL+H+++N  I
Sbjct: 247 SSLTN*TSMTISSLLRVNS*SISQDFSLSPSRQQSLLHKAQNSSI 113


>TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AAA-ATPase
           subunit RPT3 {Arabidopsis thaliana}, partial (94%)
          Length = 1575

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 30/143 (20%), Positives = 58/143 (39%), Gaps = 7/143 (4%)
 Frame = +2

Query: 682 LRSHGKSMKEDYPTMPRTDISLIHESRNRLIYDELNYNQQLLEIEHKKLMSTMTAEQKNV 741
           L  H  ++ +  P    + ISL+ +S       ++ YN  +   + +K       E    
Sbjct: 476 LHRHSNALVDVLPPEADSSISLLSQSEK----PDVTYND-IGGCDIQKQEIREAVELPLT 640

Query: 742 YEKIISRVDDNLPGIFFLYGYGGTGKTFILRALSSAVRSRKEIVLTVASSGIAALLIPGG 801
           + ++  ++  + P    LYG  GTGKT + +A+++   +    +  V S  +   L  G 
Sbjct: 641 HHELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAN--HTTAAFIRVVGSEFVQKYLGEGP 814

Query: 802 RTAHSRFGIP-------IIVDEI 817
           R     F +        I +DE+
Sbjct: 815 RMVRDVFRLAKENAPAIIFIDEV 883


>TC91937 similar to GP|22136032|gb|AAM91598.1 GTP-binding protein obg-like
           {Arabidopsis thaliana}, partial (45%)
          Length = 1011

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 16/79 (20%)
 Frame = +3

Query: 740 NVYEKIISRVDDNLP---GIFFLYGYGGTGK----------TFILRALSSAV---RSRKE 783
           NVY ++   ++  LP   GI F  G G  G+            +++     V     R+E
Sbjct: 108 NVYVEVDKAMNSLLPFRNGIHFRAGRGSHGQGRMQIGAKGDDVVVKVPPGTVIREAGREE 287

Query: 784 IVLTVASSGIAALLIPGGR 802
           ++L +   G  ALL+PGGR
Sbjct: 288 VILEMVYPGQKALLLPGGR 344


>TC88953 weakly similar to GP|10278525|emb|CAC09649. unnamed protein product
           {unidentified}, partial (26%)
          Length = 972

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 19/55 (34%), Positives = 26/55 (46%), Gaps = 10/55 (18%)
 Frame = +1

Query: 395 NRKLMLKYNAHIN----VEWCNQSRSIKYLFKYVNKGHD------RVTATFYQGG 439
           NR  M+KYN  ++     +  N +  IKYLF Y+NK +       R     YQ G
Sbjct: 109 NRYFMIKYNLWLSSREPYK*VNPTIKIKYLFIYINKLYQHYSPITRTLQALYQNG 273


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.335    0.146    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,627,823
Number of Sequences: 36976
Number of extensions: 462962
Number of successful extensions: 3234
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1793
Number of HSP's successfully gapped in prelim test: 151
Number of HSP's that attempted gapping in prelim test: 1415
Number of HSP's gapped (non-prelim): 2012
length of query: 899
length of database: 9,014,727
effective HSP length: 105
effective length of query: 794
effective length of database: 5,132,247
effective search space: 4075004118
effective search space used: 4075004118
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 63 (28.9 bits)