TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137667.10 + phase: 0 /pseudo
         (43 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC88140 similar to PIR|T47805|T47805 U6 snRNA-associated Sm-like...    89  4e-19
TC80772 similar to SP|Q9SUM2|RUXF_ARATH Probable small nuclear r...    37  0.002
AJ501228 homologue to SP|O82221|RUXG_A Probable small nuclear ri...    29  0.34
TC87426 homologue to PIR|S22826|S22826 small nuclear ribonucleop...    29  0.34

>TC88140 similar to PIR|T47805|T47805 U6 snRNA-associated Sm-like protein -
           Arabidopsis thaliana, complete
          Length = 649

 Score = 89.0 bits (219), Expect = 4e-19
 Identities = 43/43 (100%), Positives = 43/43 (100%)
 Frame = +2

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 43
           MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG
Sbjct: 248 MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLAEG 376


>TC80772 similar to SP|Q9SUM2|RUXF_ARATH Probable small nuclear
           ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
           (SmF). [Mouse-ear cress], partial (96%)
          Length = 599

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ +  TEEY+ G      G+  IR NNVLY+
Sbjct: 226 MNLQLANTEEYIEGNFTGNLGEILIRCNNVLYM 324


>AJ501228 homologue to SP|O82221|RUXG_A Probable small nuclear
           ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G)
           (SmG). [Mouse-ear cress], partial (98%)
          Length = 658

 Score = 29.3 bits (64), Expect = 0.34
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ ++ T E VNG  KN  G   IRGN+V+ +
Sbjct: 305 MNLVVDNTVE-VNGNEKNDIGMVVIRGNSVVTV 400


>TC87426 homologue to PIR|S22826|S22826 small nuclear ribonucleoprotein E
           homolog - alfalfa, complete
          Length = 609

 Score = 29.3 bits (64), Expect = 0.34
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 1   MNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 33
           MN+ ++ T E VNG  KN  G   IRGN+V+ +
Sbjct: 185 MNLVVDNTVE-VNGNEKNDIGMVVIRGNSVVTV 280


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.312    0.130    0.348 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 814,661
Number of Sequences: 36976
Number of extensions: 4419
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 43
length of database: 9,014,727
effective HSP length: 19
effective length of query: 24
effective length of database: 8,312,183
effective search space: 199492392
effective search space used: 199492392
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.3 bits)