BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137546.6 - phase: 0
(181 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW208254 similar to GP|14209608|dbj contains ESTs AU163460(R1014... 168 1e-42
TC89140 similar to GP|12003388|gb|AAG43551.1 Avr9/Cf-9 rapidly e... 112 8e-26
BE203313 similar to GP|21554593|gb| unknown {Arabidopsis thalian... 107 2e-24
TC80282 similar to GP|21554593|gb|AAM63626.1 unknown {Arabidopsi... 102 8e-23
TC88039 homologue to GP|15623873|dbj|BAB67931. hypothetical prot... 85 2e-17
TC81318 similar to GP|15528591|dbj|BAB64613. hypothetical protei... 81 3e-16
BI312078 similar to PIR|T10693|T106 hypothetical protein T16I18.... 50 5e-07
BG648731 similar to GP|2062170|gb|A unknown protein {Arabidopsis... 43 6e-05
TC89936 29 0.89
AL367857 weakly similar to GP|17529172|gb| unknown protein {Arab... 29 1.2
TC88771 similar to GP|3643603|gb|AAC42250.1| unknown protein {Ar... 29 1.2
TC81805 similar to GP|9758323|dbj|BAB08797.1 Myb-related transcr... 28 2.0
TC79501 similar to GP|9294059|dbj|BAB02016.1 MAP kinase {Arabido... 28 2.0
BG648643 homologue to GP|21618046|gb| KEULE {Arabidopsis thalian... 28 2.6
TC81762 similar to PIR|T47740|T47740 hypothetical protein F18O21... 27 4.4
TC77001 homologue to GP|9759331|dbj|BAB09840.1 60S ribosomal pro... 27 5.8
BG448256 weakly similar to GP|18252925|gb unknown protein {Arabi... 26 7.6
TC81796 weakly similar to GP|21739239|emb|CAD40994. OSJNBa0072F1... 26 7.6
BE323744 GP|7293054|gb| CG6146-PA {Drosophila melanogaster}, par... 26 9.9
TC88093 homologue to PIR|D84431|D84431 probable endosomal protei... 26 9.9
>AW208254 similar to GP|14209608|dbj contains ESTs AU163460(R10147)
AU070720(R10147)~unknown protein, partial (7%)
Length = 380
Score = 168 bits (425), Expect = 1e-42
Identities = 84/85 (98%), Positives = 84/85 (98%)
Frame = +3
Query: 1 MEIEARQGVVAKKLWNMVRVLLFIIRKGIAKSKTMVHLNLILKRGKLAGKALINTLMLNH 60
MEIEARQGVVAKKLWNMVRVLLFIIRKGIAKSKTMV LNLILKRGKLAGKALINTLMLNH
Sbjct: 126 MEIEARQGVVAKKLWNMVRVLLFIIRKGIAKSKTMVDLNLILKRGKLAGKALINTLMLNH 305
Query: 61 QLYHSSFTCRSDNNSFISPCEYEFS 85
QLYHSSFTCRSDNNSFISPCEYEFS
Sbjct: 306 QLYHSSFTCRSDNNSFISPCEYEFS 380
>TC89140 similar to GP|12003388|gb|AAG43551.1 Avr9/Cf-9 rapidly elicited
protein 146 {Nicotiana tabacum}, partial (36%)
Length = 770
Score = 112 bits (280), Expect = 8e-26
Identities = 75/204 (36%), Positives = 113/204 (54%), Gaps = 29/204 (14%)
Frame = +2
Query: 2 EIEARQGVVAKKLWNMVRVLLFIIRKGIAKSKTMVHLNLILK-RGKLAGKALINTLMLNH 60
++E V++K++W+MVRV F++RKGI+K K M+ LN++LK R KLAGKA+ N LM +H
Sbjct: 77 KMENNLPVISKRVWSMVRVAFFMLRKGISKGKLMMGLNMMLKRRSKLAGKAIAN-LMFHH 253
Query: 61 QLYHSSFTCRS--DNNSFISPCEYEFSCRNTPANPLRHSSRRFSKSRRQRHNDFSIMNN- 117
+HSS + RS + F + EYEFSC NTP + R +S HN+F +
Sbjct: 254 HSHHSSSSSRSHDSRHQFTASREYEFSCSNTPHHFFPIGKRH--RSNNHNHNNFFTCAHT 427
Query: 118 ---------NIAVQKVFIEMMLNNEKV-------EAVANSPL--------APFTL-EDEG 152
++ K +EM+ N++ + SP+ +PF L ED+
Sbjct: 428 PPTQDDDVATMSAMKAVLEMLNNDQAIVEASPALPGFGRSPMVRQLRVTDSPFPLREDDE 607
Query: 153 NCHQVDIAAEEFINNFYKELNRQN 176
+QVD AAE+FIN FY +L +Q+
Sbjct: 608 KDNQVDKAAEDFINRFYSQLRKQD 679
>BE203313 similar to GP|21554593|gb| unknown {Arabidopsis thaliana}, partial
(17%)
Length = 552
Score = 107 bits (268), Expect = 2e-24
Identities = 81/193 (41%), Positives = 108/193 (54%), Gaps = 24/193 (12%)
Frame = +1
Query: 1 MEIEARQGVVA-KKLWNMVRVLLFIIRKGIAKSKTMVHLNLILKRGKLAG-KALINTLML 58
MEIE Q VV KK+WN +R++LF+ K IAKSK + LNL+LKR KLA KA+ NTL L
Sbjct: 31 MEIETNQAVVVTKKVWNTLRIILFMFTKNIAKSKMVAQLNLLLKRSKLAAIKAIANTLAL 210
Query: 59 NHQLYHSSFTCRSDNNSFISPCEYEFSCRNTPANPLRHSSRRFSKSRRQRHNDFSIMNNN 118
H HS+ SF+SP +YEFSC N+P ++ S+ + R + HND S
Sbjct: 211 RH---HST-------ASFVSPHDYEFSCSNSP-TAIKFHSKNNNYHRGRHHNDVS----- 342
Query: 119 IAVQKVFIEMMLNNEKVEAVAN-SPL-------------------APFTL-EDEGNCH-Q 156
+QKV +LN+ V + ++ SPL +PF L E+EG+ H
Sbjct: 343 -TIQKVL--EILNDIDVSSFSSPSPLVAFPGFGKSPIGKKIRVTDSPFPLKEEEGDDHSH 513
Query: 157 VDIAAEEFINNFY 169
VD+AAEEFI FY
Sbjct: 514 VDVAAEEFIKRFY 552
>TC80282 similar to GP|21554593|gb|AAM63626.1 unknown {Arabidopsis
thaliana}, partial (21%)
Length = 927
Score = 102 bits (254), Expect = 8e-23
Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 23/191 (12%)
Frame = +1
Query: 9 VVAKKLWNMVRVLLFIIRKGIAKSKTMVHLNLILK-RGKLAGKALINTLMLNHQLYHSSF 67
++ K++W+M+RV LF++RKGI+K K M+ LN+++K RGKLAGKA+ N LM +H +H
Sbjct: 103 IITKRVWSMIRVALFMLRKGISKGKLMMDLNMMVKRRGKLAGKAITN-LMFHH--HHGGS 273
Query: 68 TCRSDNNSFISPC-EYEFSCRNTP-----ANPLRHSSRRFSKSRRQRHNDFSIMNNNIAV 121
T N++ +S EYEFSC NTP N RH+ + + + +D +N
Sbjct: 274 TSSRRNDTRLSTTREYEFSCSNTPNYKFALNNKRHNFFTCAHAPLTKEDDIVTVN----A 441
Query: 122 QKVFIEMMLNNEKVEAVANSPL----------------APFTLEDEGNCHQVDIAAEEFI 165
K +E M+NN +V A+ L +PF L D +VD AA+ FI
Sbjct: 442 VKAVLESMVNNNEVIVEASPALPGFGRTPKARQLRVTDSPFPLHDTDADAEVDKAADAFI 621
Query: 166 NNFYKELNRQN 176
FY +L +Q+
Sbjct: 622 RRFYSQLRKQD 654
>TC88039 homologue to GP|15623873|dbj|BAB67931. hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (12%)
Length = 903
Score = 84.7 bits (208), Expect = 2e-17
Identities = 66/218 (30%), Positives = 105/218 (47%), Gaps = 42/218 (19%)
Frame = +1
Query: 2 EIEARQGVVAKKLWNMVRVLLFIIRKG-IAKSKTMVHLNLILKRGKLAGKALINTLMLNH 60
E+E VVAK+LWN++R+ F++RK ++K K ++ +NL++K+GK+ K+L N + ++
Sbjct: 16 EMEVHSSVVAKRLWNVLRITFFMMRKSLVSKRKMIMDMNLMMKKGKVLRKSLSNLMSSHN 195
Query: 61 QLYHSSFTCRSDNNSFISPCEYEFSCRNTPANPLRHSSRRFSKSRRQRHNDFSIMNNNIA 120
+ +H S S N +YEFSC N+P NP F+ S+R+ H F +N
Sbjct: 196 RHHHHS----SKNGGGFMVHDYEFSCSNSP-NP-----AFFNMSKRKHHFSFPCINAPNV 345
Query: 121 V---------QKVFIEMMLNNEKVEAVANSP---------------------LAPFTL-- 148
+ Q IE + N + A P L+PF++
Sbjct: 346 IDEEPLPCQYQLSPIEFDIENVSKDGKAMVPKTPEYAFNFKFDSSEERKSPLLSPFSVRV 525
Query: 149 ---------EDEGNCHQVDIAAEEFINNFYKELNRQNR 177
++ GNC QVD AE+FI FY++L Q R
Sbjct: 526 SNYSALGDNDEIGNC-QVDDEAEDFIRRFYEQLRTQGR 636
>TC81318 similar to GP|15528591|dbj|BAB64613. hypothetical protein {Oryza
sativa (japonica cultivar-group)}, partial (14%)
Length = 943
Score = 80.9 bits (198), Expect = 3e-16
Identities = 66/178 (37%), Positives = 90/178 (50%), Gaps = 11/178 (6%)
Frame = +3
Query: 9 VVAKKLWNMVRVLLFIIRKGIAKS-KTMVHLNLILKRGKLAGKALINTLMLNHQLYHSSF 67
VV +K+ VR+L F+I+ G++KS + M + ++KRGK GKAL N +M+ H H +
Sbjct: 120 VVIEKVSKTVRLLGFLIQNGVSKSHRVMQDMQEVMKRGKNIGKAL-NNVMVKH---HEAL 287
Query: 68 TCRSDNNS--FISPCEYEFSCRNTPANPLR--HSSRR------FSKSRRQRHNDFSIMNN 117
TCR + FISP EY+FSC ++P R +SSRR +SRRQ + N
Sbjct: 288 TCRPRDADMYFISPLEYQFSCSSSPPRLSRGANSSRRKLLSPVAERSRRQMRVYYGTRNE 467
Query: 118 NIAVQKVFIEMMLNNEKVEAVANSPLAPFTLEDEGNCHQVDIAAEEFINNFYKELNRQ 175
V+ M E VE V +VD AAEEFI FY+EL Q
Sbjct: 468 GRRVK------MTKRETVEEV----------------FEVDQAAEEFIERFYRELRLQ 575
>BI312078 similar to PIR|T10693|T106 hypothetical protein T16I18.70 -
Arabidopsis thaliana, partial (11%)
Length = 637
Score = 50.1 bits (118), Expect = 5e-07
Identities = 47/129 (36%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Frame = +2
Query: 49 GKALINTLMLNHQLYHSSFTCRSDNNS--FISPCEYEFSCRNTPANPLRHSSRRFSKSRR 106
GKAL N++M+ H H + TCR + FISP EY+FSC ++P R + S SRR
Sbjct: 5 GKAL-NSVMVKH---HEALTCRPRDADMYFISPLEYQFSCSSSPPRLSRGGA---SSSRR 163
Query: 107 QRHNDFSIMNNNIAVQKVFIEMMLNNEKVEAVANSPLAPFTLEDEGNCHQVDIAAEEFIN 166
+ +++ + +++ NE+ V + L+ T E E H VD AAEEFI
Sbjct: 164 K------LLSPAKEDGRRQMKVCRGNER-RRVKMTTLSRET-EKEKEFH-VDQAAEEFIE 316
Query: 167 NFYKELNRQ 175
FY+EL Q
Sbjct: 317 KFYRELRLQ 343
>BG648731 similar to GP|2062170|gb|A unknown protein {Arabidopsis thaliana},
partial (11%)
Length = 717
Score = 43.1 bits (100), Expect = 6e-05
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Frame = +1
Query: 49 GKALINTLMLNHQLYHSSFTCRSDNNSFISPCEYEFSCRNTPAN--PL--RH-SSRRFSK 103
GKA+ N + +H + S + R ++ F + EYEFSC NTP + P+ RH S FS
Sbjct: 25 GKAIANLMFHHHHNHGGSTSSRRSHHQFTASREYEFSCSNTPNHFFPIGKRHRSHNNFST 204
Query: 104 SRR---QRHNDFSIMNNNIAVQKVFIEM 128
S + + +D + M+ AV K FI +
Sbjct: 205 SAQAPPTQDDDVATMSAMKAVLKTFIAL 288
>TC89936
Length = 410
Score = 29.3 bits (64), Expect = 0.89
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = -3
Query: 37 HLNLILKRGKLAGKALINTLMLNHQLYHSS 66
H+N I RG L K ++ L NH+ YHS+
Sbjct: 309 HINKITGRGILYQKLMVTLLKHNHKWYHSN 220
>AL367857 weakly similar to GP|17529172|gb| unknown protein {Arabidopsis
thaliana}, partial (14%)
Length = 317
Score = 28.9 bits (63), Expect = 1.2
Identities = 24/86 (27%), Positives = 37/86 (42%), Gaps = 10/86 (11%)
Frame = -1
Query: 4 EARQGVVAKKLWNMVRVLLFIIRKGIAKSKTMVHLNLILKRGKLAGKALINTLMLNH--- 60
EA+ V +KLW + ++RK AK K + LN + K+ IN + H
Sbjct: 263 EAKTRVTRRKLWTTIWGERLLVRKCNAKGKAISFLNFSIFTWKI-NIICINCICNKHSHH 87
Query: 61 ----QLYHSS---FTCRSDNNSFISP 79
QL+H + + + N FI P
Sbjct: 86 SNDNQLFHQTYFPYLEHGEKNFFIHP 9
>TC88771 similar to GP|3643603|gb|AAC42250.1| unknown protein {Arabidopsis
thaliana}, partial (33%)
Length = 1295
Score = 28.9 bits (63), Expect = 1.2
Identities = 14/54 (25%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Frame = +1
Query: 73 NNSFISPCEYEF---SCRNTPANPLRHSSRRFSKSRRQRHNDFSIMNNNIAVQK 123
+N +++ YE +CR + PL S S + H+D N+ +A+Q+
Sbjct: 241 SNEYLTLTAYEIFVAACRTSSGKPLSSSIANSSSNNNNSHSDSPNQNSPLAIQR 402
>TC81805 similar to GP|9758323|dbj|BAB08797.1 Myb-related transcription
factor-like protein {Arabidopsis thaliana}, partial
(46%)
Length = 1221
Score = 28.1 bits (61), Expect = 2.0
Identities = 26/106 (24%), Positives = 49/106 (45%), Gaps = 6/106 (5%)
Frame = +2
Query: 74 NSFISPCEYEFSCRNTPANPLRHSSRRFSKSRRQRHNDFSIMNNNIAVQKVFIEMMLNNE 133
N+F SP + + P ++S F+ S +N+ SIM++++A + +E NNE
Sbjct: 638 NAFSSP-QVDLLENIIPLENNNNNSVTFNASGNSSNNNNSIMHSSVAPRGEAVEKSTNNE 814
Query: 134 KVEAVAN------SPLAPFTLEDEGNCHQVDIAAEEFINNFYKELN 173
++ + + + T+EDE + D + NN K+ N
Sbjct: 815 GIQELESELDEILNNRNIITMEDEYRVAEFD-CFRDMNNNGSKDQN 949
>TC79501 similar to GP|9294059|dbj|BAB02016.1 MAP kinase {Arabidopsis
thaliana}, partial (18%)
Length = 1093
Score = 28.1 bits (61), Expect = 2.0
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 95 RHSSRRFSKSRRQRH---NDFSIMNNNIAVQKVFIEMMLNNEKVEAVANSPLAPF 146
R S+ SK ++Q+H ND + NNNI + V + + + V N PL PF
Sbjct: 170 RSSTTSTSKQQQQQHQHSNDNNNNNNNINIDLV-VRDLRSQLAVIPTTNDPLTPF 331
>BG648643 homologue to GP|21618046|gb| KEULE {Arabidopsis thaliana}, partial
(1%)
Length = 470
Score = 27.7 bits (60), Expect = 2.6
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
Frame = -3
Query: 123 KVFIEMMLNNEKVEAVANSPL-----APFTLE------DEGNCHQVDIAAEEFINNFYKE 171
K +E M+NN +V A+ L P T + D +VD AAE FI FY +
Sbjct: 414 KAVLEKMVNNNEVIGEASPVLPGSRRTPMTRQLMVNDLDTDTDAEVDKAAEAFIKRFYLQ 235
Query: 172 L 172
L
Sbjct: 234 L 232
>TC81762 similar to PIR|T47740|T47740 hypothetical protein F18O21.190 -
Arabidopsis thaliana, partial (26%)
Length = 661
Score = 26.9 bits (58), Expect = 4.4
Identities = 9/22 (40%), Positives = 17/22 (76%)
Frame = -3
Query: 54 NTLMLNHQLYHSSFTCRSDNNS 75
NT++ NHQ+ +S+F + +N+S
Sbjct: 335 NTILHNHQVSYSNFAAKQENHS 270
>TC77001 homologue to GP|9759331|dbj|BAB09840.1 60S ribosomal protein L12
{Arabidopsis thaliana}, partial (98%)
Length = 791
Score = 26.6 bits (57), Expect = 5.8
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 12/81 (14%)
Frame = -1
Query: 87 RNTPANPLRHSSRRFSKSRRQRHN----------DFSIMNNNIAVQKV--FIEMMLNNEK 134
RNT L HSS + + R + HN D IM + +++ + + L+N++
Sbjct: 500 RNTGPQNLLHSSGKLFRHRPRLHNLCNLNNIIKRDIPIMLDVLSLLAIPFWFLQSLDNQR 321
Query: 135 VEAVANSPLAPFTLEDEGNCH 155
NS L+ L E +CH
Sbjct: 320 SRRRNNSDLSLTILNGELDCH 258
>BG448256 weakly similar to GP|18252925|gb unknown protein {Arabidopsis
thaliana}, partial (79%)
Length = 649
Score = 26.2 bits (56), Expect = 7.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 84 FSCRNTPANPLRHSSRRFSKSRRQRHN 110
F C P +P S+ RFS SR HN
Sbjct: 570 FPCATFPCHPSSMSNPRFSSSRYS*HN 490
>TC81796 weakly similar to GP|21739239|emb|CAD40994. OSJNBa0072F16.18 {Oryza
sativa}, partial (55%)
Length = 649
Score = 26.2 bits (56), Expect = 7.6
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 84 FSCRNTPANPLRHSSRRFSKSRRQRHN 110
F C P +P S+ RFS SR HN
Sbjct: 408 FPCATFPCHPSSMSNPRFSSSRYS*HN 328
>BE323744 GP|7293054|gb| CG6146-PA {Drosophila melanogaster}, partial (1%)
Length = 344
Score = 25.8 bits (55), Expect = 9.9
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +2
Query: 56 LMLNHQLYHSSFTCRSDNNSFISPCEYEFSCRNTPANPLRHSSRRFSKSRRQRHNDFSIM 115
++LN +HSS + N F S N P+ PLR + +K H +
Sbjct: 44 MLLNPHHHHSSSSSSHQTNMFEIQPSSSSSSMNPPSPPLREALPLINKLSLINHQQQNEP 223
Query: 116 NNNIAVQKVFIEMMLNNEKVE 136
+N Q IE L ++++E
Sbjct: 224 SNIFNTQT--IEDELEDKRME 280
>TC88093 homologue to PIR|D84431|D84431 probable endosomal protein
[imported] - Arabidopsis thaliana, partial (55%)
Length = 1220
Score = 25.8 bits (55), Expect = 9.9
Identities = 17/49 (34%), Positives = 26/49 (52%), Gaps = 8/49 (16%)
Frame = -2
Query: 83 EFSCRNTPANPLRHSSRRFSKSRRQRHND--------FSIMNNNIAVQK 123
EFS P+NP ++ RR +K + +ND SI++N +VQK
Sbjct: 487 EFSLAVLPSNPSQYK*RRRNKCPYENYNDNCAEWESGSSIVDNCNSVQK 341
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,724,544
Number of Sequences: 36976
Number of extensions: 79954
Number of successful extensions: 541
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of query: 181
length of database: 9,014,727
effective HSP length: 90
effective length of query: 91
effective length of database: 5,686,887
effective search space: 517506717
effective search space used: 517506717
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC137546.6