BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137510.8 - phase: 0 /pseudo
(254 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA918829 similar to GP|15450341|gb AT4g11980/F16J13_50 {Arabidop... 186 4e-56
TC92481 similar to GP|15450341|gb|AAK96464.1 AT4g11980/F16J13_50... 118 4e-53
BG454059 weakly similar to GP|14596037|gb MutT domain protein-li... 32 0.18
AW776045 weakly similar to GP|14596037|gb MutT domain protein-li... 30 1.2
BG587499 weakly similar to PIR|A23448|ISC triose-phosphate isome... 29 2.0
TC82764 weakly similar to GP|14596037|gb|AAK68746.1 MutT domain ... 28 2.6
TC81098 homologue to GP|20373023|dbj|BAB91180. lipoic acid synth... 28 2.6
BG453534 similar to GP|10178283|emb lipoic acid synthase-like pr... 28 2.6
TC85701 weakly similar to GP|20149064|gb|AAM12787.1 putative ant... 28 2.6
TC77447 similar to GP|16974501|gb|AAL31160.1 AT3g06720/F3E22_14 ... 28 3.4
BG646467 similar to SP|O64668|PSNH Presenilin homolog. [Mouse-ea... 28 4.5
TC80135 similar to GP|20260610|gb|AAM13203.1 unknown protein {Ar... 27 7.6
TC90331 weakly similar to GP|21751020|dbj|BAC03887. unnamed prot... 27 7.6
TC82441 similar to GP|14532702|gb|AAK64152.1 unknown protein {Ar... 27 9.9
TC85170 homologue to PIR|JC4781|JC4781 peroxidase (EC 1.11.1.7) ... 27 9.9
>CA918829 similar to GP|15450341|gb AT4g11980/F16J13_50 {Arabidopsis
thaliana}, partial (54%)
Length = 635
Score = 186 bits (471), Expect(2) = 4e-56
Identities = 96/101 (95%), Positives = 98/101 (96%)
Frame = -3
Query: 129 KETGNKVPGIVFARGPAVAMLILLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGD 188
K ++VPGIVFARGPAVAMLILLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGD
Sbjct: 630 KVNHDQVPGIVFARGPAVAMLILLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGD 451
Query: 189 IVGTAVREVEEETGIKLNVEDMVDLTAFLDSSTGSTVFPSP 229
IVGTAVREVEEETGIKLNVEDMVDLTAFLDSSTGSTVFPSP
Sbjct: 450 IVGTAVREVEEETGIKLNVEDMVDLTAFLDSSTGSTVFPSP 328
Score = 49.7 bits (117), Expect(2) = 4e-56
Identities = 25/25 (100%), Positives = 25/25 (100%)
Frame = -1
Query: 230 SAESVLIKRSSHISKVKRLAFVNMG 254
SAESVLIKRSSHISKVKRLAFVNMG
Sbjct: 296 SAESVLIKRSSHISKVKRLAFVNMG 222
>TC92481 similar to GP|15450341|gb|AAK96464.1 AT4g11980/F16J13_50
{Arabidopsis thaliana}, partial (18%)
Length = 762
Score = 118 bits (295), Expect(2) = 4e-53
Identities = 58/62 (93%), Positives = 58/62 (93%)
Frame = +2
Query: 15 LKPFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQSEPVHILAAPGVSSSDFWS 74
LKPFHAPNLIPKKKKNGFFYKM SSTESPSLTHSITLPSKQSEPVHILAAPGVSSSDF
Sbjct: 2 LKPFHAPNLIPKKKKNGFFYKMWSSTESPSLTHSITLPSKQSEPVHILAAPGVSSSDFCG 181
Query: 75 AI 76
I
Sbjct: 182CI 187
Score = 107 bits (267), Expect(2) = 4e-53
Identities = 52/52 (100%), Positives = 52/52 (100%)
Frame = +1
Query: 84 WLHNLQTENGILANDTMTLRQVLIQGVDMFGKRIGFLKFIAEIIDKETGNKV 135
WLHNLQTENGILANDTMTLRQVLIQGVDMFGKRIGFLKFIAEIIDKETGNKV
Sbjct: 178 WLHNLQTENGILANDTMTLRQVLIQGVDMFGKRIGFLKFIAEIIDKETGNKV 333
>BG454059 weakly similar to GP|14596037|gb MutT domain protein-like
{Arabidopsis thaliana}, partial (61%)
Length = 664
Score = 32.3 bits (72), Expect = 0.18
Identities = 52/192 (27%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
Frame = +2
Query: 36 MSSSTESPSLTHSITLPSKQSEP-VHILAAPGVSSSDFWSAIDSSLFKQWLHNLQTENGI 94
MS+STE + + + S V ++ P + S+ F S + S+ W Q + G+
Sbjct: 26 MSASTEEDQIQLLTSTDDEYSGVIVELMDHPIMDSTTFLSILRPSI-SNWKQ--QGKKGV 196
Query: 95 -------LANDTMTLRQVLIQGVDMFGKRIGFLKFIAEIIDKETGNKVPGIVFARGPAVA 147
LAN TL + +G +L + I D + N +P R A
Sbjct: 197 WIKLPIHLANLVETL---IKEGFWYHHAEPKYLMLVHWIAD--SANTIPANATHRVGIGA 361
Query: 148 MLILLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNV 207
++ +E VL E+ G + P G+ D + DI AVREV+EETGI
Sbjct: 362 FVV---NEKREVLVLQEKTGHFQGTGSWKFPTGVADQGE-DICAAAVREVKEETGID--- 520
Query: 208 EDMVDLTAFLDS 219
+ V++ AF S
Sbjct: 521 SEFVEVLAFRQS 556
>AW776045 weakly similar to GP|14596037|gb MutT domain protein-like
{Arabidopsis thaliana}, partial (45%)
Length = 535
Score = 29.6 bits (65), Expect = 1.2
Identities = 23/74 (31%), Positives = 37/74 (49%)
Frame = +1
Query: 130 ETGNKVPGIVFARGPAVAMLILLESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDI 189
E+ N +P R V + L +E V+ E + + G + + G++D + DI
Sbjct: 304 ESPNTIPANATHR---VGIGSFLMNEKHEVLVVRENSGLFQGTGVWKFSTGVVDQGE-DI 471
Query: 190 VGTAVREVEEETGI 203
AVREV+EETG+
Sbjct: 472 CVAAVREVKEETGV 513
>BG587499 weakly similar to PIR|A23448|ISC triose-phosphate isomerase (EC
5.3.1.1) - chicken, partial (88%)
Length = 797
Score = 28.9 bits (63), Expect = 2.0
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Frame = -3
Query: 7 TISAALKNLKPFHAPNLIPKKKKNGFFYKMSSS--------TESPSLTHSITLPSKQSEP 58
T ++ +L P HA IP MSSS +E P +TH I S
Sbjct: 393 TPASRSSSLSPIHAITFIPTSNACEILEAMSSSDSLKIVLRSE*PKITHPILRSFNISGL 214
Query: 59 VHILAAPGVSSSDFWSAIDSSLFKQWLHNLQTENGILANDTMT 101
+ + AP + FW+A SL +L+T++ +A +T
Sbjct: 213 ISPV*APLETLYAFWAATSISL----RTDLRTKSRYIAGGAIT 97
>TC82764 weakly similar to GP|14596037|gb|AAK68746.1 MutT domain
protein-like {Arabidopsis thaliana}, partial (49%)
Length = 723
Score = 28.5 bits (62), Expect = 2.6
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +1
Query: 188 DIVGTAVREVEEETGIKLNVEDMVDLTAFLDS 219
DI AVREV+EETGI + V++ AF S
Sbjct: 619 DICAAAVREVKEETGID---SEFVEVLAFRQS 705
>TC81098 homologue to GP|20373023|dbj|BAB91180. lipoic acid synthase
{Arabidopsis thaliana}, partial (44%)
Length = 842
Score = 28.5 bits (62), Expect = 2.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 17 PFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQSEPVHILAAPGVSSSD 71
PFH K + F + + PSL+HS + S Q +P+ + A + S+
Sbjct: 119 PFHKTT-----KPSSFTFTLRCQANDPSLSHSEVVVSPQQQPLSVSAMSKLMESE 268
>BG453534 similar to GP|10178283|emb lipoic acid synthase-like protein
{Arabidopsis thaliana}, partial (10%)
Length = 660
Score = 28.5 bits (62), Expect = 2.6
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 17 PFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITLPSKQSEPVHILAAPGVSSSD 71
PFH K + F + + PSL+HS + S Q +P+ + A + S+
Sbjct: 148 PFHKTT-----KPSSFTFTLRCQANDPSLSHSEVVVSPQQQPLSVSAMSKLMESE 297
>TC85701 weakly similar to GP|20149064|gb|AAM12787.1 putative anthocyanidine
rhamnosyl-transferase {Capsicum annuum}, partial (32%)
Length = 1755
Score = 28.5 bits (62), Expect = 2.6
Identities = 24/73 (32%), Positives = 34/73 (45%)
Frame = +1
Query: 153 ESEGETYAVLTEQARVPVGRIILELPAGMLDDDKGDIVGTAVREVEEETGIKLNVEDMVD 212
E EGE ++EQ +VPV +P G+L +R+ EEE N D V
Sbjct: 772 ELEGEWLDYISEQYKVPV------VPVGLLPP------SMQIRDDEEEE----NNPDWVK 903
Query: 213 LTAFLDSSTGSTV 225
+ +LDS S+V
Sbjct: 904 IKGWLDSRESSSV 942
>TC77447 similar to GP|16974501|gb|AAL31160.1 AT3g06720/F3E22_14 {Arabidopsis
thaliana}, partial (96%)
Length = 2271
Score = 28.1 bits (61), Expect = 3.4
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = -1
Query: 213 LTAFLDSSTGSTVFPSPSAESVLIKRSSHISK 244
+ AFL +S +F SPS ++V I S H+S+
Sbjct: 1461 MPAFLSASPTFKMFSSPSRQTVTILGSGHVSR 1366
>BG646467 similar to SP|O64668|PSNH Presenilin homolog. [Mouse-ear cress]
{Arabidopsis thaliana}, partial (49%)
Length = 796
Score = 27.7 bits (60), Expect = 4.5
Identities = 25/76 (32%), Positives = 31/76 (39%), Gaps = 4/76 (5%)
Frame = +1
Query: 8 ISAALKNLKPFHAPNLIPKKKKNGFF----YKMSSSTESPSLTHSITLPSKQSEPVHILA 63
IS+ LK P P K F + SSS SPS + S T + V + A
Sbjct: 199 ISSTLKT------PPTPPHKNSKAHFSTPSFSSSSSPSSPSFSSSFTTTTAPPSSVTMSA 360
Query: 64 APGVSSSDFWSAIDSS 79
+P SSS W SS
Sbjct: 361 SPPSSSSLPWVDPSSS 408
>TC80135 similar to GP|20260610|gb|AAM13203.1 unknown protein {Arabidopsis
thaliana}, partial (57%)
Length = 1199
Score = 26.9 bits (58), Expect = 7.6
Identities = 15/39 (38%), Positives = 20/39 (50%), Gaps = 5/39 (12%)
Frame = +3
Query: 26 KKKKNGFFY-----KMSSSTESPSLTHSITLPSKQSEPV 59
+KK NGF K SS + S HS+ LPS + P+
Sbjct: 261 RKKPNGFHIQHHDTKSSSPNSNGSNQHSLPLPSLHNSPI 377
>TC90331 weakly similar to GP|21751020|dbj|BAC03887. unnamed protein product
{Homo sapiens}, partial (25%)
Length = 557
Score = 26.9 bits (58), Expect = 7.6
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 37 SSSTESPSLTHSITLPSKQSEPVHILAAPGVSSS 70
SSST S S + S + PS S P + AAP + S
Sbjct: 343 SSSTSSSSTSSSSSSPSSFSSPSSMSAAPSLRGS 444
>TC82441 similar to GP|14532702|gb|AAK64152.1 unknown protein {Arabidopsis
thaliana}, partial (21%)
Length = 809
Score = 26.6 bits (57), Expect = 9.9
Identities = 15/46 (32%), Positives = 23/46 (49%)
Frame = +2
Query: 6 RTISAALKNLKPFHAPNLIPKKKKNGFFYKMSSSTESPSLTHSITL 51
+TI+ NLKPFH P++ K MS +++ S H + L
Sbjct: 275 QTIAETKLNLKPFHTTKQ-PQENKKSNAESMSEKSDAVSGKHKLKL 409
>TC85170 homologue to PIR|JC4781|JC4781 peroxidase (EC 1.11.1.7) 1C
precursor - alfalfa, complete
Length = 1164
Score = 26.6 bits (57), Expect = 9.9
Identities = 18/61 (29%), Positives = 28/61 (45%)
Frame = +1
Query: 38 SSTESPSLTHSITLPSKQSEPVHILAAPGVSSSDFWSAIDSSLFKQWLHNLQTENGILAN 97
SST SP T + T +Q + PG + ++F K + NLQ + G+L +
Sbjct: 646 SSTGSPDPTLNTTY-LQQLRTICPNGGPGTNLTNFDPTTPDKFDKNYYSNLQVKKGLLQS 822
Query: 98 D 98
D
Sbjct: 823 D 825
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.133 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,374,898
Number of Sequences: 36976
Number of extensions: 80552
Number of successful extensions: 538
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of query: 254
length of database: 9,014,727
effective HSP length: 94
effective length of query: 160
effective length of database: 5,538,983
effective search space: 886237280
effective search space used: 886237280
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC137510.8