BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137079.15 + phase: 0 /pseudo
(864 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F2... 332 4e-91
AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsi... 215 5e-56
BG587156 similar to PIR|G85055|G8 probable polyprotein [imported... 185 7e-47
CB893805 similar to GP|10177935|d copia-type polyprotein {Arabid... 168 7e-42
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 140 3e-33
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 137 2e-32
BG644690 weakly similar to GP|18542179|gb putative pol protein {... 130 2e-30
BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2... 130 2e-30
BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sati... 96 5e-20
BG586293 weakly similar to PIR|E84473|E84 probable retroelement ... 89 9e-18
CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotia... 73 2e-17
BG452576 weakly similar to GP|12005223|gb|A reverse transcriptas... 87 3e-17
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 86 5e-17
TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol po... 86 6e-17
BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vu... 84 2e-16
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 77 2e-14
AW773859 77 4e-14
BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T... 69 1e-11
BG586255 similar to GP|7682800|gb Hypothetical protein T15F17.l ... 68 1e-11
BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberos... 65 1e-10
>BI309716 weakly similar to PIR|G96722|G9 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (10%)
Length = 744
Score = 332 bits (851), Expect = 4e-91
Identities = 167/244 (68%), Positives = 197/244 (80%)
Frame = +2
Query: 579 SSQVCKLNKSLYGLKQASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLVYVD 638
+++VC+L KS+YGLKQASRQWYSKLS SLISFGY QS +D+SLF K +SFT LLVYVD
Sbjct: 11 NTKVCELQKSIYGLKQASRQWYSKLSESLISFGYLQSSSDFSLFTKFKDSSFTTLLVYVD 190
Query: 639 DIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLED 698
DIVLAGN ISEI+ VK FL ++F IKDLG LRYFLG E+ARSK GILLNQRKYTLELLED
Sbjct: 191 DIVLAGNDISEIQHVKCFLIDRFKIKDLGSLRYFLGLEVARSKQGILLNQRKYTLELLED 370
Query: 699 AGTLGSKPAATPFDPSTKLGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQF 758
+G L K TP+D S KL + + D + YRRLIG+L+YLT TRPDIS++VQ LSQF
Sbjct: 371 SGNLAVKSTLTPYDISLKLHNSDSPLYNDETQYRRLIGKLIYLTTTRPDISFAVQQLSQF 550
Query: 759 VSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKLHGFADSDWACCPDTRRSVTGYCV 818
VS+P HYQAA R+L+YLK++PAKGLF+S++S LKL FADSDWA CP TR+SVTGY V
Sbjct: 551 VSKPQQVHYQAAIRVLQYLKTAPAKGLFYSATSNLKLSSFADSDWATCPTTRKSVTGYWV 730
Query: 819 LLGS 822
LGS
Sbjct: 731 FLGS 742
>AW689768 weakly similar to GP|10177485|d polyprotein {Arabidopsis thaliana},
partial (9%)
Length = 675
Score = 215 bits (548), Expect = 5e-56
Identities = 102/193 (52%), Positives = 136/193 (69%)
Frame = +1
Query: 456 WREAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQ 515
W +AM TE AL N TW +V LPP K IGCKWVY+VK + +GS+ ++KARLVA+G++Q
Sbjct: 97 WLQAMKTEYKALIDNKTWDLVPLPPHKKAIGCKWVYRVKENPDGSVNKFKARLVAKGFSQ 276
Query: 516 TEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYP 575
T G DY +TFSPV K TIR++L++A W ++Q+D+NNAFL+G L EEVYM+ P G+
Sbjct: 277 TLGCDYTETFSPVIKPVTIRLILTIAITYKWEIQQIDINNAFLNGFLQEEVYMSQPQGFE 456
Query: 576 TINSSQVCKLNKSLYGLKQASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALLV 635
N S VCKLNKSLYGLKQA R WY L+++ I FG+T+S D SL + + L +
Sbjct: 457 AANKSLVCKLNKSLYGLKQAPRAWYEXLTSAQIQFGFTKSRCDPSLLIYNQNGACIYLXI 636
Query: 636 YVDDIVLAGNCIS 648
YVDDI++ G+ S
Sbjct: 637 YVDDILITGSSAS 675
>BG587156 similar to PIR|G85055|G8 probable polyprotein [imported] -
Arabidopsis thaliana, partial (17%)
Length = 618
Score = 185 bits (469), Expect = 7e-47
Identities = 91/192 (47%), Positives = 131/192 (67%), Gaps = 4/192 (2%)
Frame = -1
Query: 435 CCTISSINE---PKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVY 491
C + ++NE P+++ +A + + W+E++ E A+ KN+TW LP GK + +W++
Sbjct: 594 CAFMVNLNENHIPRSYEEAMEDKEWKESVGAEAGAMIKNDTWYESELPKGKKAVSSRWIF 415
Query: 492 KVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQL 551
+KY A+GSIER K RLVA+G+T T G DY +TF+PVAKL TIR++LSLA GW L Q+
Sbjct: 414 TIKYKADGSIERKKTRLVARGFTLTYGEDYIETFAPVAKLHTIRIVLSLAVNLGWGLWQM 235
Query: 552 DVNNAFLHGDLHEEVYMALPPGYP-TINSSQVCKLNKSLYGLKQASRQWYSKLSTSLISF 610
DV NAFL G+L +EVYM PPG + V +L K++YGLKQ+ R WY+KLST+L
Sbjct: 234 DVKNAFLQGELEDEVYMYPPPGLEHLVKRGNVLRLKKAIYGLKQSPRAWYNKLSTTLNGR 55
Query: 611 GYTQSLADYSLF 622
G+ +S D++LF
Sbjct: 54 GFRKSELDHTLF 19
>CB893805 similar to GP|10177935|d copia-type polyprotein {Arabidopsis
thaliana}, partial (14%)
Length = 778
Score = 168 bits (426), Expect = 7e-42
Identities = 91/257 (35%), Positives = 149/257 (57%), Gaps = 8/257 (3%)
Frame = +3
Query: 438 ISSINEPKTFAQANKSECWREAMTTELNALAKNNTWSVVTLPPGKVPIGCKWVYKVKYHA 497
++ ++P TF +A KSE WR +M E+ A +NNTW + L G IG KW++K K +
Sbjct: 24 LTMTSDPTTFEEAVKSEKWRASMNNEMEATERNNTWELTDLRSGAKTIGLKWIFKTKLNE 203
Query: 498 NGSIERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAF 557
NG IE+YKARLVA+GY+Q GVDY + F+PVA+ TIR++++LAA Q+ +
Sbjct: 204 NGEIEKYKARLVAKGYSQQYGVDYTEVFAPVARWDTIRMVIALAA-------QIKRDGVC 362
Query: 558 L------HGDLHEEVYMALPPGYPTINSSQVC-KLNKSLYGLKQASRQWYSKLSTSLISF 610
+ H + + L + + + ++ ++LYGLKQA R WYS++
Sbjct: 363 IS*M*KAHSCMEN*MRKFLLINHRVM*RRVIS*RVKRALYGLKQAPRAWYSRIEAYFTKE 542
Query: 611 GYTQSLADYSLFVKVS-GASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQL 669
G+ + +++LFVK+S G + +YVDD++ GN + + K + +F + DLG++
Sbjct: 543 GFEKCPYEHTLFVKLSEGGKILIISLYVDDLIFIGNDENMFEEFKKSMKKEFNMSDLGKM 722
Query: 670 RYFLGFEIARSKSGILL 686
YFLG E+ +++ GI +
Sbjct: 723 HYFLGVEVTQNEKGIYI 773
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 140 bits (352), Expect = 3e-33
Identities = 81/210 (38%), Positives = 118/210 (55%), Gaps = 4/210 (1%)
Frame = -3
Query: 31 VWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFDLL 90
+WH RLGH L+++ F KN C+AC K + FP +S FDL+
Sbjct: 584 LWHARLGHPHGRALNLMLPGVVFEN--KN---CEACILGKHCKNVFPRTSTVYENCFDLI 420
Query: 91 HADLWGPYSTPSFL--GHKYFLTLVDDYSRFTWVIFLKTKDETQKHLKHFISYVENQFHT 148
+ DLW + PS HKYF+T +D+ S++TW+ + +KD K+F +YV N +H
Sbjct: 419 YTDLW---TAPSLSRDNHKYFVTFIDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHA 249
Query: 149 TLKCLRSDNGSEF--IAMTSFLLSKGIIHHKTCVETPQQNGVVERKHQHILNVARSLAFH 206
+K LRSDNG E+ A S L GI+H +C TPQQNGV +RK++H++ VARSL F
Sbjct: 248 KIKILRSDNGGEYTSYAFKSHLDHHGILHQTSCPYTPQQNGVAKRKNKHLMEVARSLMFQ 69
Query: 207 SHVPITMWNFTVQHAVHIINRIPSPLLKFK 236
++ V A ++IN IP+ +L+ K
Sbjct: 68 AN---------VSTACYLINWIPTKVLRIK 6
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 137 bits (345), Expect = 2e-32
Identities = 85/250 (34%), Positives = 131/250 (52%), Gaps = 6/250 (2%)
Frame = +1
Query: 68 YAKQKRLPFPHSSIKSSAPFDLLHADLWGPYSTPSFLGHKYFLTLVDDYSRFTWVIFLKT 127
+ +K++ F ++ ++ D +H+DLWGP S+ G +Y +T++DD+ R WV FL+
Sbjct: 40 FGNRKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDDFPRKVWVYFLRY 219
Query: 128 KDETQKHLKHFISYVENQFHTTLKCLRSDNGSEFIA--MTSFLLSKGIIHHKTCVETPQQ 185
K+ET K + VE Q +K L +DN EF + F + GI HKT PQQ
Sbjct: 220 KNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGIARHKTIPRNPQQ 399
Query: 186 NGVVERKHQHILNVARSLAFHSHV--PITMWNFTVQHAVHIINRIPSPLLKFKSPFELLH 243
NGV ER + +L AR + ++ + +W A H++NR P L FK P ++
Sbjct: 400 NGVAERMIRTLLERARCMLSNAGL*N*RDLWVEAASTACHLVNRSPHSALDFKVPEDIWS 579
Query: 244 KEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILY--DLNSNELF 301
+L++FGC AYA + K PRA + IFL + +KG L+ D S +L
Sbjct: 580 GNLVDYSNLRIFGCPAYA---LVNDGKLAPRAGECIFLSYASESKGYRLWCSDPKSQKLI 750
Query: 302 VSRNVIFYEN 311
+SR+V F E+
Sbjct: 751 LSRDVTFNED 780
>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
partial (22%)
Length = 629
Score = 130 bits (327), Expect = 2e-30
Identities = 66/141 (46%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Frame = -2
Query: 501 IERYKARLVAQGYTQTEGVDYFDTFSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHG 560
I R K++LV QGY Q EG+DY + FSPVA++ IR+L++ AA G+ L Q+DV +AF++G
Sbjct: 424 ITRNKSKLVVQGYNQKEGIDYDEAFSPVARMEAIRILIAFAAFMGFKLYQMDVKSAFING 245
Query: 561 DLHEEVYMALPPGYPTIN-SSQVCKLNKSLYGLKQASRQWYSKLSTSLISFGYTQSLADY 619
DL EEV++ PPG+ + V +LNK+LYGLKQA R WY +LS L+ G+ + D
Sbjct: 244 DLKEEVFVKQPPGFEDAEVPNHVFRLNKTLYGLKQAPRAWYERLSKFLLKNGFKRGKIDN 65
Query: 620 SLFVKVSGASFTALLVYVDDI 640
+LF+ + VYVDDI
Sbjct: 64 TLFLLKRE*ELLIIQVYVDDI 2
>BG586159 weakly similar to PIR|T47841|T4 hypothetical protein T2O9.150 -
Arabidopsis thaliana, partial (11%)
Length = 732
Score = 130 bits (327), Expect = 2e-30
Identities = 67/189 (35%), Positives = 106/189 (55%)
Frame = +1
Query: 676 EIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPFDPSTKLGATTGTPFTDASSYRRLI 735
E+ +++ GI + QRKY +LLE G S + P P KL DA+ Y++++
Sbjct: 4 EVIQNEEGIYICQRKYVTDLLERFGMEKSNLSRNPIAPRCKLIKDENGVKVDATKYKQIV 183
Query: 736 GRLLYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKL 795
G L+YL TRPD+ Y + +S+F++ P H A +R+L+YL + G+ + + KL
Sbjct: 184 GCLMYLAATRPDLMYVLSLISRFMNCPTELHMHAVKRVLRYLNGTINLGIMYKRNGSEKL 363
Query: 796 HGFADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEAEYRALAHLTCELQ 855
+ DSD+A D R+S +GY +L S +SW SKKQ V+ S+T+AE+ A A C+
Sbjct: 364 EAYTDSDYAGDLDDRKSTSGYVFMLSSGAVSWSSKKQPVVTLSTTKAEFIAAAFCACQSV 543
Query: 856 WLNYLFHDL 864
W+ + L
Sbjct: 544 WMRRVLEKL 570
>BE123913 weakly similar to GP|22093573|d polyprotein {Oryza sativa (japonica
cultivar-group)}, partial (8%)
Length = 503
Score = 96.3 bits (238), Expect = 5e-20
Identities = 51/119 (42%), Positives = 73/119 (60%), Gaps = 1/119 (0%)
Frame = +1
Query: 594 QASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFTALL-VYVDDIVLAGNCISEIKS 652
Q+ R W+ + + + FGY Q D+++F+K S A+L VYVDDI L G+ IK
Sbjct: 1 QSPRDWFDRFT*VVKKFGYIQCQTDHAMFIKHSSTVKKAILIVYVDDIFLTGDHGK*IKR 180
Query: 653 VKTFLDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKYTLELLEDAGTLGSKPAATPF 711
+K L +F IKDLG L+YFLG E+AR K G ++QRKY L+LL++ +G K P+
Sbjct: 181 LKNLLAEEFEIKDLGNLKYFLGMEVARWKKGSSISQRKYVLDLLKETRMIGCKTIRDPY 357
Score = 59.7 bits (143), Expect = 5e-09
Identities = 27/58 (46%), Positives = 38/58 (64%)
Frame = +2
Query: 702 LGSKPAATPFDPSTKLGATTGTPFTDASSYRRLIGRLLYLTNTRPDISYSVQNLSQFV 759
L KP+ TP D + KLG D Y+RL+G+L+YL++TRPDIS+ V +SQF+
Sbjct: 329 LDVKPSETPMDATVKLGTLDNGTLVDKGRYQRLVGKLIYLSHTRPDISFVVCTMSQFM 502
>BG586293 weakly similar to PIR|E84473|E84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(7%)
Length = 763
Score = 88.6 bits (218), Expect = 9e-18
Identities = 40/92 (43%), Positives = 64/92 (69%)
Frame = +2
Query: 469 KNNTWSVVTLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPV 528
+ T +V P G PIG +W+YK+K + +G++ +YKARLVA+GY + +G+D+ + F+PV
Sbjct: 47 QKQTLKLVKKPTGVKPIGLRWIYKIKRNEDGTLIKYKARLVAKGYVKQQGIDFDEVFAPV 226
Query: 529 AKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHG 560
++ TI +LL+LAA G + +DV AFL+G
Sbjct: 227 VRIETI*LLLALAATNGC*IHHIDVKIAFLNG 322
>CB893680 weakly similar to GP|1167523|db ORF(AA 1-1338) {Nicotiana tabacum},
partial (7%)
Length = 780
Score = 73.2 bits (178), Expect(2) = 2e-17
Identities = 39/74 (52%), Positives = 47/74 (62%)
Frame = -2
Query: 525 FSPVAKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMALPPGYPTINSSQVCK 584
F P+ KL TI LLS+ AI+ +LE LDV AFL GDL E++YM P G+ V K
Sbjct: 554 FVPIVKLNTIMFLLSIVAIENLYLE*LDVKTAFLRGDLVEDIYMHQPEGFS*EVGKMVGK 375
Query: 585 LNKSLYGLKQASRQ 598
L KS+YGLKQ RQ
Sbjct: 374 LKKSMYGLKQGPRQ 333
Score = 35.0 bits (79), Expect(2) = 2e-17
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = -3
Query: 624 KVSGASFTALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSK-S 682
+VS F LLV G+ I EIK++KT + +KDLG + +G +I K
Sbjct: 298 RVSEVKFQPLLV-------VGSNIDEIKNLKTRFSKEIDMKDLGPAKKIIGMQIMIDKQK 140
Query: 683 GIL-LNQRKYTLELLE 697
G+L L+Q +Y +L+
Sbjct: 139 GVL*LSQVEYITRVLQ 92
>BG452576 weakly similar to GP|12005223|gb|A reverse transcriptase-like
protein {Spiranthes hongkongensis}, partial (25%)
Length = 676
Score = 87.0 bits (214), Expect = 3e-17
Identities = 76/191 (39%), Positives = 100/191 (51%), Gaps = 17/191 (8%)
Frame = +2
Query: 529 AKLTTIRVLLSLAAIKGWHLEQLDVNNAFLHGDLHEEVYMAL-------PPGYPTINSS- 580
AKL+T+R L A IKG+ + + FL GD+ E + M L Y N S
Sbjct: 2 AKLSTVRNLFVFAGIKGYLMSIM----LFLLGDVDE*I*MVLLFIWCQRSWFYSMFNCSL 169
Query: 581 ---------QVCKLNKSLYGLKQASRQWYSKLSTSLISFGYTQSLADYSLFVKVSGASFT 631
Q C K R+ Y KL ++LIS GY QS D+S+F G FT
Sbjct: 170 *IS*LHLWSQTCP*TMIF---KVF*RK*Y*KLLSTLISLGYKQSPNDHSIFS--FGRRFT 334
Query: 632 ALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSKSGILLNQRKY 691
LVY+DDIV A + SE + VK+ LD F I LG L Y +G +IA S+S I+ +Q KY
Sbjct: 335 IFLVYLDDIVFARDDHSETQLVKSHLDKNFIIIGLGTLHY-VGVKIA*SES*IIDDQCKY 511
Query: 692 TLELLEDAGTL 702
T+ELLE++G L
Sbjct: 512 TIELLEESGQL 544
Score = 30.0 bits (66), Expect = 4.0
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 16/152 (10%)
Frame = +3
Query: 582 VCKLNKSLYGLKQASRQWYSKLSTS-----------LISFGYTQSLADYSLFVKVSGASF 630
VCK + S+YGLK A RQ YSK L Q + + V G F
Sbjct: 165 VCKFHNSIYGLKHAHRQ*YSKFFEGNDIESCYQL*FL*DINNLQMITPF--LVLAVGLLF 338
Query: 631 T----ALLVYVDDIVLAGNCISEIKSVKTFLDNKFCIKDLGQLRYFLGFEIARSKSGILL 686
+L + I+L N +S I + + G ++ + +L+
Sbjct: 339 FWYIWMILFLLVTIILKLNLLSPIWI-------RIS*S*V*AHSIMSGSKLLNQRVKLLM 497
Query: 687 NQRKYTLELLEDAGT-LGSKPAATPFDPSTKL 717
L L+ + LG KP++TP DPS KL
Sbjct: 498 ISANILLSCLKKVVS*LGMKPSSTPRDPSLKL 593
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 86.3 bits (212), Expect = 5e-17
Identities = 43/113 (38%), Positives = 65/113 (57%)
Frame = +1
Query: 182 TPQQNGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSPLLKFKSPFEL 241
TPQQNGV ER ++ +L R++ + + + W V+ A ++INR PS ++ K+P E+
Sbjct: 85 TPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKTACYVINRSPSTVIDLKTPMEM 264
Query: 242 LHKEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGTKGSILYD 294
+P L VFGC Y RTK +P++RK IFLG+ + KG L+D
Sbjct: 265 WKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIFLGYADNVKGYXLWD 423
>TC92908 similar to GP|10140704|gb|AAG13538.1 putative gag-pol polyprotein
{Oryza sativa}, partial (1%)
Length = 638
Score = 85.9 bits (211), Expect = 6e-17
Identities = 54/146 (36%), Positives = 82/146 (55%)
Frame = +2
Query: 409 VSSGISSYPLSSFLSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALA 468
++S SY + ++ Y + S + I+S EPK + QA + + W AM E+ L
Sbjct: 179 LNSSSKSYHIFHYVGY-SFSAKHRASLAAITSNIEPKNYVQAAQ*QEWLAAMEQEIQVLE 355
Query: 469 KNNTWSVVTLPPGKVPIGCKWVYKVKYHANGSIERYKARLVAQGYTQTEGVDYFDTFSPV 528
+NNT ++ L GK + C+ VYK+ + ANG IE+YKA+LVA+ + Q EG D+ D
Sbjct: 356 ENNTSTLEPLREGKKWVDCRPVYKIIHKANGEIEKYKAQLVAKDFVQVEGEDF*D-LCLS 532
Query: 529 AKLTTIRVLLSLAAIKGWHLEQLDVN 554
K R LL++AA KG L +DV+
Sbjct: 533 NKDDNCRCLLTIAAAKG*QLHLMDVS 610
>BF650113 weakly similar to GP|4753889|emb| Tpv2-1c {Phaseolus vulgaris},
partial (13%)
Length = 494
Score = 84.3 bits (207), Expect = 2e-16
Identities = 51/123 (41%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Frame = +1
Query: 745 RPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFF---SSSSELKLHGFADS 801
RPDI YSV +S+F+ P PH AA RIL+Y++ + GL F + S +L ++DS
Sbjct: 121 RPDICYSVSVISKFMHDPRKPHLIAANRILRYVRGTMEYGLLFPYGAKSEVYELICYSDS 300
Query: 802 DWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEAEYRALAHLTCELQWLNYLF 861
DW C D RRS +GY + ISW +KKQ + SS EAEY A T + WL+ +
Sbjct: 301 DW--CGD-RRSTSGYVFKFNDAAISWCTKKQPITALSSYEAEYIAGTFATFQALWLDSVI 471
Query: 862 HDL 864
+L
Sbjct: 472 KEL 480
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 77.4 bits (189), Expect = 2e-14
Identities = 37/90 (41%), Positives = 57/90 (63%)
Frame = -2
Query: 221 AVHIINRIPSPLLKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIF 280
A ++INRIP+ +LK ++PFE+L++ PS+ +++VFGCL Y R K R+RK +F
Sbjct: 704 ACYLINRIPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNKLEARSRKAMF 525
Query: 281 LGFKEGTKGSILYDLNSNELFVSRNVIFYE 310
+G+ KG YD + + VSR+V F E
Sbjct: 524 IGYSTTQKGYKCYDPEARRVLVSRDVKFIE 435
>AW773859
Length = 538
Score = 76.6 bits (187), Expect = 4e-14
Identities = 33/72 (45%), Positives = 49/72 (67%)
Frame = -3
Query: 31 VWHMRLGHVSSSGLSVISKQFPFIPCIKNAPPCDACHYAKQKRLPFPHSSIKSSAPFDLL 90
+WH RLGH+S+ L + FPFI +N+ CD CHY++ K+LPF S+ ++S ++L
Sbjct: 230 LWHFRLGHLSNRKLLSLHSNFPFITIDQNSV-CDICHYSRHKKLPFQLSTNRASKCYELF 54
Query: 91 HADLWGPYSTPS 102
H D+WGP+ST S
Sbjct: 53 HFDIWGPFSTQS 18
>BG644677 weakly similar to GP|7682800|gb| Hypothetical protein T15F17.l
{Arabidopsis thaliana}, partial (3%)
Length = 539
Score = 68.6 bits (166), Expect = 1e-11
Identities = 38/104 (36%), Positives = 58/104 (55%)
Frame = -3
Query: 739 LYLTNTRPDISYSVQNLSQFVSRPMVPHYQAAQRILKYLKSSPAKGLFFSSSSELKLHGF 798
+ LT P+I++S+ LS++ S P + H + I KYLK GLF+S L G+
Sbjct: 531 ILLTLQGPNITFSINLLSRYSSAPTMRH*NGIKHICKYLKGIIDMGLFYSKDCSPDLIGY 352
Query: 799 ADSDWACCPDTRRSVTGYCVLLGSSLISWKSKKQSTVSRSSTEA 842
++ + P RS TGY G+++ISW+S K ST++ SS A
Sbjct: 351 VNA*YLSDPHKARS*TGYIFTCGNTVISWRSTK*STIATSSNHA 220
>BG586255 similar to GP|7682800|gb Hypothetical protein T15F17.l {Arabidopsis
thaliana}, partial (12%)
Length = 436
Score = 68.2 bits (165), Expect = 1e-11
Identities = 39/116 (33%), Positives = 55/116 (46%)
Frame = -1
Query: 172 GIIHHKTCVETPQQNGVVERKHQHILNVARSLAFHSHVPITMWNFTVQHAVHIINRIPSP 231
G + + + V QNG+ E + I + R L S P++ W V HA +I PS
Sbjct: 415 G*VWNTSVVHVHTQNGLAESFIKRIQLITRPLLMRSKQPVSAWGHAVLHAAELIRIRPSS 236
Query: 232 LLKFKSPFELLHKEPPSIIHLKVFGCLAYASTLQAHRTKFNPRARKTIFLGFKEGT 287
K+ SP +LL P + H+K FG Y HRTK P+ R I++GF T
Sbjct: 235 EHKY-SPSQLLSGHVPDVSHIKTFGYPVYVPIAPPHRTKMGPQRRMGIYVGFDSPT 71
>BG648737 weakly similar to GP|21433|emb|CA ORF3 {Solanum tuberosum}, partial
(10%)
Length = 804
Score = 64.7 bits (156), Expect = 1e-10
Identities = 28/75 (37%), Positives = 45/75 (59%)
Frame = +3
Query: 414 SSYPLSSFLSYDNCSPTYTHFCCTISSINEPKTFAQANKSECWREAMTTELNALAKNNTW 473
+S+P+ F+SYD SP + F + I P + ++ + W++A+ E++AL KN TW
Sbjct: 579 TSHPICKFISYDKLSPHHLAFVSNLDKIQIPNSVHESLTNP*WKKAILGEIHALEKNETW 758
Query: 474 SVVTLPPGKVPIGCK 488
+ LP GK P+GCK
Sbjct: 759 ELSDLPSGKHPMGCK 803
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.320 0.134 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,630,072
Number of Sequences: 36976
Number of extensions: 533235
Number of successful extensions: 3172
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 3062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3154
length of query: 864
length of database: 9,014,727
effective HSP length: 104
effective length of query: 760
effective length of database: 5,169,223
effective search space: 3928609480
effective search space used: 3928609480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Medicago: description of AC137079.15