BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136954.11 + phase: 0
(174 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79814 homologue to GP|9759265|dbj|BAB09586.1 gene_id:MRI1.4~pi... 355 4e-99
TC89829 similar to GP|9759265|dbj|BAB09586.1 gene_id:MRI1.4~pir|... 124 2e-29
TC90506 79 9e-16
BF004603 similar to PIR|T05097|T050 hypothetical protein F28M20.... 73 5e-14
TC84866 32 0.099
TC78227 similar to GP|10176883|dbj|BAB10113. contains similarity... 31 0.29
TC93070 weakly similar to GP|17065230|gb|AAL32769.1 Unknown prot... 31 0.29
TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d... 30 0.38
TC90584 similar to GP|22136810|gb|AAM91749.1 unknown protein {Ar... 30 0.38
TC83962 similar to PIR|B86289|B86289 hypothetical protein AAF719... 30 0.49
TC91066 29 0.84
TC79247 weakly similar to GP|15294288|gb|AAK95321.1 AT5g60490/mu... 29 0.84
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo... 29 1.1
TC89581 similar to PIR|B96661|B96661 unknown protein 83181-8510... 29 1.1
TC88091 homologue to SP|P51819|HS83_PHANI Heat shock protein 83.... 28 1.4
BE203720 similar to PIR|T51666|T51 myb-related transcription fac... 28 1.4
TC86132 similar to PIR|T51666|T51666 myb-related transcription f... 28 1.4
BI310179 similar to PIR|T52381|T523 zinc finger protein Zat1 C2... 28 1.4
TC86131 similar to PIR|T51666|T51666 myb-related transcription f... 28 1.4
AL386355 28 1.9
>TC79814 homologue to GP|9759265|dbj|BAB09586.1
gene_id:MRI1.4~pir||T04230~similar to unknown protein
{Arabidopsis thaliana}, partial (42%)
Length = 892
Score = 355 bits (912), Expect = 4e-99
Identities = 174/174 (100%), Positives = 174/174 (100%)
Frame = +3
Query: 1 MAAYREPMNVSERAPISSQVPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGY 60
MAAYREPMNVSERAPISSQVPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGY
Sbjct: 123 MAAYREPMNVSERAPISSQVPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGY 302
Query: 61 LEGNGESERDLEAGERNNDTDQKPYEEKILVIMAGQDKPTFLATPSMSSSTSTSTSRSSS 120
LEGNGESERDLEAGERNNDTDQKPYEEKILVIMAGQDKPTFLATPSMSSSTSTSTSRSSS
Sbjct: 303 LEGNGESERDLEAGERNNDTDQKPYEEKILVIMAGQDKPTFLATPSMSSSTSTSTSRSSS 482
Query: 121 FGDNTSTCTCEHDKDQKSIENMNDEESTVKQGGGGGENHVRRTESVETPTTDTS 174
FGDNTSTCTCEHDKDQKSIENMNDEESTVKQGGGGGENHVRRTESVETPTTDTS
Sbjct: 483 FGDNTSTCTCEHDKDQKSIENMNDEESTVKQGGGGGENHVRRTESVETPTTDTS 644
Score = 25.8 bits (55), Expect = 9.3
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 111 TSTSTSRSSSFGDNTSTCTC 130
TSTSTS + +TSTCTC
Sbjct: 512 TSTSTSVVTKRRGSTSTCTC 453
>TC89829 similar to GP|9759265|dbj|BAB09586.1
gene_id:MRI1.4~pir||T04230~similar to unknown protein
{Arabidopsis thaliana}, partial (44%)
Length = 555
Score = 124 bits (311), Expect = 2e-29
Identities = 76/148 (51%), Positives = 91/148 (61%), Gaps = 10/148 (6%)
Frame = +3
Query: 11 SERAPIS--SQVPHSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYL--EGNGE 66
S AP S S + HS WHSP+PYLFGGLAAMLGLIAFALLILACSYW+L+G L E N
Sbjct: 120 SSLAPSSTASMMNHSSWHSPIPYLFGGLAAMLGLIAFALLILACSYWRLTGQLLDEENNS 299
Query: 67 SERDLE---AGERNNDTDQKPYEEKILVIMAGQDKPTFLATPSMSSSTST---STSRSSS 120
+ R++E GE +N K YEEK+LVIMAG PTFLATP S+S + S
Sbjct: 300 NNRNMENEKEGENSNKESVKVYEEKVLVIMAGDQNPTFLATPVFPKSSSVMNLDANHSDE 479
Query: 121 FGDNTSTCTCEHDKDQKSIENMNDEEST 148
+N T +K +K E M EE +
Sbjct: 480 QRENHETV----EKSEK--EEMETEEQS 545
>TC90506
Length = 468
Score = 79.0 bits (193), Expect = 9e-16
Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 9/114 (7%)
Frame = +3
Query: 25 WHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLEGNGESERDLEAGERNNDTDQKP 84
W SP+PYLFGGLA ML LI+ AL+IL CSY K + + E + +N ++
Sbjct: 66 WQSPIPYLFGGLAIMLILISVALVILVCSYKKRGSSSQSSNSDEEMKQVMSKN--IEKIN 239
Query: 85 YEEKILVIMAGQDKPTFLATPSMSSST---------STSTSRSSSFGDNTSTCT 129
E ++LVIMAG+DKPT++A P + +++ STST+ SS+ + T T
Sbjct: 240 SEPEVLVIMAGEDKPTYIAKPIIITTSLPYCTCGGESTSTTSSSTLTNEEITLT 401
>BF004603 similar to PIR|T05097|T050 hypothetical protein F28M20.80 -
Arabidopsis thaliana, partial (29%)
Length = 508
Score = 73.2 bits (178), Expect = 5e-14
Identities = 39/84 (46%), Positives = 52/84 (61%)
Frame = +2
Query: 27 SPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLEGNGESERDLEAGERNNDTDQKPYE 86
SP+PYLFGG+A +LG+IA ALLI+ACS+ K Y ++ + + D D E
Sbjct: 83 SPIPYLFGGIALVLGVIAIALLIIACSFRK--QYSSSTSTNDEEKSSNMHVVDMDHVSLE 256
Query: 87 EKILVIMAGQDKPTFLATPSMSSS 110
KI+VIMAG+ PT+LA P S S
Sbjct: 257 PKIVVIMAGESNPTYLAKPVSSIS 328
>TC84866
Length = 913
Score = 32.3 bits (72), Expect = 0.099
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Frame = +2
Query: 102 LATPSMSSSTSTST----------SRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQ 151
L+ SM S +TST S S +NTS +CE D E ++ +T
Sbjct: 320 LSASSMESELTTSTVSINVKPAYNSASQIISENTSLTSCEMMNDPPPSEVVSIHRAT--- 490
Query: 152 GGGGGENHVRRTESVETPTTD 172
G+N ++R +VE+P+ +
Sbjct: 491 ----GDNDIQRVTTVESPSAE 541
>TC78227 similar to GP|10176883|dbj|BAB10113. contains similarity to unknown
protein~gb|AAD10691.1~gene_id:K9L2.3 {Arabidopsis
thaliana}, partial (27%)
Length = 1707
Score = 30.8 bits (68), Expect = 0.29
Identities = 18/37 (48%), Positives = 25/37 (66%), Gaps = 6/37 (16%)
Frame = -2
Query: 101 FLATPSMSSSTSTSTSRSSSF------GDNTSTCTCE 131
F+AT S SSS+S+S+S SSSF D++S+ CE
Sbjct: 296 FIATYSSSSSSSSSSSSSSSFSDECL*SDSSSSLGCE 186
>TC93070 weakly similar to GP|17065230|gb|AAL32769.1 Unknown protein
{Arabidopsis thaliana}, partial (19%)
Length = 679
Score = 30.8 bits (68), Expect = 0.29
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = -3
Query: 103 ATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEES 147
A PS SSS+S+S+S SSS ++S+ + KSI +++ ES
Sbjct: 344 ANPSSSSSSSSSSSSSSS---SSSSSSSSSSSSSKSISSISSSES 219
>TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
HD2-P39 {Glycine max}, partial (47%)
Length = 1233
Score = 30.4 bits (67), Expect = 0.38
Identities = 14/22 (63%), Positives = 17/22 (76%)
Frame = -1
Query: 107 MSSSTSTSTSRSSSFGDNTSTC 128
+SSS S+S+S SSSFG T TC
Sbjct: 609 ISSSDSSSSSESSSFGSTTFTC 544
>TC90584 similar to GP|22136810|gb|AAM91749.1 unknown protein {Arabidopsis
thaliana}, partial (18%)
Length = 686
Score = 30.4 bits (67), Expect = 0.38
Identities = 17/53 (32%), Positives = 30/53 (56%)
Frame = +3
Query: 105 PSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQGGGGGE 157
P+ SSS+S+S++ SSS ++S + + S ++ +D S GGGG +
Sbjct: 96 PTSSSSSSSSSAASSSSSSSSSAAS----SSKGSADSSSDTGSGASSGGGGDD 242
>TC83962 similar to PIR|B86289|B86289 hypothetical protein AAF71991.1
[imported] - Arabidopsis thaliana, partial (11%)
Length = 679
Score = 30.0 bits (66), Expect = 0.49
Identities = 17/25 (68%), Positives = 18/25 (72%)
Frame = +2
Query: 103 ATPSMSSSTSTSTSRSSSFGDNTST 127
+TPS SSSTSTSTS SSS ST
Sbjct: 80 STPSPSSSTSTSTSSSSSPPPTPST 154
>TC91066
Length = 735
Score = 29.3 bits (64), Expect = 0.84
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 4/54 (7%)
Frame = +2
Query: 92 IMAGQDKPTFLATPSMSSSTSTS----TSRSSSFGDNTSTCTCEHDKDQKSIEN 141
IMA + + F P+ + T+TS + R+SS GD+T H K Q + N
Sbjct: 398 IMASEKERPFNEKPAETVETATSHGLSSDRASSHGDSTDVDNTHHSKVQPAAVN 559
>TC79247 weakly similar to GP|15294288|gb|AAK95321.1 AT5g60490/muf9_140
{Arabidopsis thaliana}, partial (47%)
Length = 864
Score = 29.3 bits (64), Expect = 0.84
Identities = 15/48 (31%), Positives = 24/48 (49%)
Frame = +1
Query: 104 TPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQ 151
T + S+S T SS+ +NTS CT H K + +++ S+ Q
Sbjct: 232 TSNNSNSAITRIKHSSTCSNNTSWCTITHHNSPKRTHH*HNQHSSKSQ 375
>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
falciparum 3D7}, partial (10%)
Length = 633
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/40 (32%), Positives = 26/40 (64%)
Frame = -3
Query: 88 KILVIMAGQDKPTFLATPSMSSSTSTSTSRSSSFGDNTST 127
++L++ P+ ++ S SSS+S+S+S SSS ++S+
Sbjct: 271 RVLILSISSSSPSSSSSSSSSSSSSSSSSSSSSCSSSSSS 152
>TC89581 similar to PIR|B96661|B96661 unknown protein 83181-85105
[imported] - Arabidopsis thaliana, partial (35%)
Length = 716
Score = 28.9 bits (63), Expect = 1.1
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +3
Query: 98 KPTFLATPSMSSSTSTSTSRSS 119
+P F+ + S+SSS+STSTSR S
Sbjct: 129 RPQFILSSSLSSSSSTSTSRFS 194
>TC88091 homologue to SP|P51819|HS83_PHANI Heat shock protein 83. [Violet
Japanese morning glory] {Pharbitis nil}, partial (77%)
Length = 1813
Score = 28.5 bits (62), Expect = 1.4
Identities = 14/27 (51%), Positives = 21/27 (76%)
Frame = -3
Query: 101 FLATPSMSSSTSTSTSRSSSFGDNTST 127
FLA+ S+SSSTS++T SS G ++S+
Sbjct: 281 FLASFSLSSSTSSTTPSSSFLGSSSSS 201
>BE203720 similar to PIR|T51666|T51 myb-related transcription factor MYB59
[imported] - Arabidopsis thaliana, partial (48%)
Length = 514
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 103 ATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQG 152
ATPS+SSS S+S SS N++ H +++S E N + ++QG
Sbjct: 349 ATPSISSSPDQSSSCQSSHFSNSNHGVDSHASNKES-EEENYQVQEIEQG 495
>TC86132 similar to PIR|T51666|T51666 myb-related transcription factor MYB59
[imported] - Arabidopsis thaliana, partial (50%)
Length = 1343
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 103 ATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQG 152
ATPS+SSS S+S SS N++ H +++S E N + ++QG
Sbjct: 529 ATPSISSSPDQSSSCQSSHFSNSNHGVDSHASNKES-EEENYQVQEIEQG 675
>BI310179 similar to PIR|T52381|T523 zinc finger protein Zat1 C2H2-type
[imported] - Arabidopsis thaliana, partial (16%)
Length = 704
Score = 28.5 bits (62), Expect = 1.4
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 108 SSSTSTSTSRSSSFGDNTSTCTCEH 132
S S+S+ TS SSS+ ++STC C +
Sbjct: 654 SLSSSSRTSSSSSWSSSSSTCCCSY 580
>TC86131 similar to PIR|T51666|T51666 myb-related transcription factor MYB59
[imported] - Arabidopsis thaliana, partial (47%)
Length = 719
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 103 ATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQG 152
ATPS+SSS S+S SS N++ H +++S E N + ++QG
Sbjct: 484 ATPSISSSPDQSSSCQSSHFSNSNHGVDSHASNKES-EEENYQVQEIEQG 630
>AL386355
Length = 469
Score = 28.1 bits (61), Expect = 1.9
Identities = 19/67 (28%), Positives = 27/67 (39%)
Frame = +1
Query: 93 MAGQDKPTFLATPSMSSSTSTSTSRSSSFGDNTSTCTCEHDKDQKSIENMNDEESTVKQG 152
+ G +PT + T +S+ TSTS+S S S C + KS N + K
Sbjct: 250 LGGNQEPTPVTTTMLSTKRRTSTSKSGS----KSNCKAVEVEKIKSPTRRNSSSTKSKSS 417
Query: 153 GGGGENH 159
NH
Sbjct: 418 ITNSGNH 438
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.308 0.126 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,273,177
Number of Sequences: 36976
Number of extensions: 74088
Number of successful extensions: 1103
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of query: 174
length of database: 9,014,727
effective HSP length: 89
effective length of query: 85
effective length of database: 5,723,863
effective search space: 486528355
effective search space used: 486528355
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Medicago: description of AC136954.11