BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136841.8 + phase: 0 /pseudo
(119 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL370071 similar to GP|15795135|dbj transposase-like protein {Ar... 120 6e-29
TC82359 weakly similar to GP|22655127|gb|AAM98154.1 putative pro... 57 1e-09
TC90728 similar to GP|7715599|gb|AAF68117.1| F20B17.17 {Arabidop... 47 1e-06
AW586560 27 0.87
BQ137623 homologue to GP|6175677|gb|AA ORF33 {Xestia c-nigrum gr... 27 1.1
AW585802 similar to PIR|F84431|F844 hypothetical protein At2g019... 27 1.5
TC89534 similar to SP|Q9C5Z1|IF39_ARATH Eukaryotic translation i... 26 1.9
AL371008 similar to GP|11127595|dbj cold acclimation protein hom... 26 1.9
TC79852 similar to PIR|T47423|T47423 hypothetical protein T22K7.... 26 2.5
TC77596 similar to GP|18377702|gb|AAL67001.1 putative clathrin b... 26 2.5
BQ751982 similar to PIR|T38789|T387 hypothetical protein SPAC4C5... 25 5.6
TC85831 similar to GP|4156245|dbj|BAA37112.1 ATHP3 {Arabidopsis ... 25 5.6
BE943149 similar to GP|12321742|gb peptide chain release factor ... 24 7.3
TC89841 similar to PIR|T02307|T02307 probable membrane transport... 24 7.3
TC81047 weakly similar to GP|20268776|gb|AAM14091.1 unknown prot... 24 9.6
TC93828 24 9.6
AW774578 similar to GP|14581445|gb protein kinase AtSIK {Arabido... 24 9.6
TC89808 similar to GP|5903062|gb|AAD55621.1| Is a member of PF|0... 24 9.6
TC81545 similar to GP|15100055|gb|AAK84223.1 transcription facto... 24 9.6
>AL370071 similar to GP|15795135|dbj transposase-like protein {Arabidopsis
thaliana}, partial (3%)
Length = 370
Score = 120 bits (302), Expect = 6e-29
Identities = 58/95 (61%), Positives = 67/95 (70%), Gaps = 3/95 (3%)
Frame = +3
Query: 3 RTLHGPLHAAGYFLNPQFHSSHGFRDDIEGKGGLHDCITRMVADPEERAKIEIQLDDFDK 62
+ H PLHAAGYFLN Q+H S GFRDD++ K GL CITRMV D EER+KIEIQLDDFDK
Sbjct: 84 KQFHSPLHAAGYFLNAQYHYSPGFRDDVKVKRGLQHCITRMVTDHEERSKIEIQLDDFDK 263
Query: 63 WANDMGYSVA---AGNEVPSVWWSPFGKGLPELQK 94
AN G+ +A A E+P +WW G PELQK
Sbjct: 264 QANQFGHPIAIITADMEIPPIWWGSLVDGPPELQK 368
>TC82359 weakly similar to GP|22655127|gb|AAM98154.1 putative protein
{Arabidopsis thaliana}, partial (14%)
Length = 907
Score = 57.0 bits (136), Expect = 1e-09
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Frame = +3
Query: 12 AGYFLNPQFHSSHGFRDDIEGKGGLHDCITRMVADPEERAKIEIQLDDFDKWANDMGYSV 71
AG++LNP+F S E + G+ DCI R+V D + KI +L+ + A D G +
Sbjct: 57 AGFYLNPKFFYSIQGDVPNEIRSGMLDCIERLVPDTRVQDKISKELNLYKSAAGDFGRKM 236
Query: 72 AA---GNEVPSVWWSPFGKGLPELQK 94
A N +PS WWS +G G P L +
Sbjct: 237 AIRARDNLLPSEWWSTYGGGCPNLSR 314
>TC90728 similar to GP|7715599|gb|AAF68117.1| F20B17.17 {Arabidopsis
thaliana}, partial (58%)
Length = 1171
Score = 46.6 bits (109), Expect = 1e-06
Identities = 31/95 (32%), Positives = 44/95 (45%), Gaps = 5/95 (5%)
Frame = +3
Query: 5 LHGPLHAAGYFLNP--QFHSSHGFRDDIEGKGGLHDCITRMVADPEERAKIEIQLDDFDK 62
LH PLHAA FLNP Q++ F I K + + +++ P+ R I Q+ F K
Sbjct: 360 LHSPLHAAAAFLNPSIQYNPEIKFLSSI--KEDFYHVLEKLLPVPDMRRDITNQIYTFTK 533
Query: 63 WANDMGYSV---AAGNEVPSVWWSPFGKGLPELQK 94
G S+ A P +WW +G P LQ+
Sbjct: 534 AHGMFGCSLTKEARNTVAPWLWWEQYGDSAPGLQR 638
>AW586560
Length = 191
Score = 27.3 bits (59), Expect = 0.87
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 76 EVPSVWWSPFGKGLPELQKFVSCIKLDMKF 105
+ PS SP + P F +C KLD+KF
Sbjct: 95 QFPSKTLSPPPRHFPHRSPFANCFKLDLKF 6
>BQ137623 homologue to GP|6175677|gb|AA ORF33 {Xestia c-nigrum granulovirus},
partial (12%)
Length = 1074
Score = 26.9 bits (58), Expect = 1.1
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +3
Query: 67 MGYSVAAGNEVPSVWWSPFG-KGLPELQKFVSCIK 100
+G S G +WW P G KG+P L F +K
Sbjct: 117 LGTSSGGGGAGSRIWWVPPGLKGIPALMAFFPDLK 221
>AW585802 similar to PIR|F84431|F844 hypothetical protein At2g01990
[imported] - Arabidopsis thaliana, partial (11%)
Length = 565
Score = 26.6 bits (57), Expect = 1.5
Identities = 17/55 (30%), Positives = 29/55 (51%)
Frame = +3
Query: 11 AAGYFLNPQFHSSHGFRDDIEGKGGLHDCITRMVADPEERAKIEIQLDDFDKWAN 65
+A F + S G+ +D + G R++ D +E++K I +DDFDK+ N
Sbjct: 123 SAASFSTQESDFSTGYLEDALVEFGESSKRRRLLTD-DEQSKNTISIDDFDKFWN 284
>TC89534 similar to SP|Q9C5Z1|IF39_ARATH Eukaryotic translation initiation
factor 3 subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b)
(p82)., partial (31%)
Length = 981
Score = 26.2 bits (56), Expect = 1.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 43 MVADPEERAKIEIQLDDFDKWAND 66
++ +ER K + +D+DKWAN+
Sbjct: 470 LLLSEQEREKRRVLKEDWDKWANE 541
>AL371008 similar to GP|11127595|dbj cold acclimation protein homolog
{Arabidopsis thaliana}, partial (21%)
Length = 451
Score = 26.2 bits (56), Expect = 1.9
Identities = 14/46 (30%), Positives = 24/46 (51%)
Frame = +1
Query: 12 AGYFLNPQFHSSHGFRDDIEGKGGLHDCITRMVADPEERAKIEIQL 57
A Y L Q +S GFRD + G+ + I ++ ++ + +IQL
Sbjct: 25 ACYLLQEQIRASGGFRDSLTKAHGISNTIGIILLFSQKLMEYQIQL 162
>TC79852 similar to PIR|T47423|T47423 hypothetical protein T22K7.10 -
Arabidopsis thaliana, partial (43%)
Length = 995
Score = 25.8 bits (55), Expect = 2.5
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = +1
Query: 44 VADPEERAKIEIQLDDFDKWANDMGYSV 71
V+ P E A I+ L+DF A D+G+ V
Sbjct: 31 VSKPPENAFIKQILEDFSSVAEDLGFQV 114
>TC77596 similar to GP|18377702|gb|AAL67001.1 putative clathrin binding
protein {Arabidopsis thaliana}, partial (44%)
Length = 2019
Score = 25.8 bits (55), Expect = 2.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 79 SVWWSPFGKGLPELQKFVSCIKLDMKF 105
S+WW +PE++KF +CI + F
Sbjct: 1732 SIWW------VPEVKKFTNCILIPSHF 1794
>BQ751982 similar to PIR|T38789|T387 hypothetical protein SPAC4C5.03 -
fission yeast (Schizosaccharomyces pombe), partial (12%)
Length = 645
Score = 24.6 bits (52), Expect = 5.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -3
Query: 61 DKWANDMGY---SVAAGNEVPSVWWSPFGKGLPELQKFVSCIKLDMKFLW 107
D WAN +G ++AA VP +W + K + L + CI+ FL+
Sbjct: 604 DIWANFLGVMAGALAAVQYVPQIWTTYHIKHVGSLSIPMMCIQTPGGFLF 455
>TC85831 similar to GP|4156245|dbj|BAA37112.1 ATHP3 {Arabidopsis thaliana},
partial (91%)
Length = 826
Score = 24.6 bits (52), Expect = 5.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 15 FLNPQFHSSHGFRDDIEGKGGLH 37
F QF HG D E GGLH
Sbjct: 126 FFQFQFQEKHGGGSDAETVGGLH 194
>BE943149 similar to GP|12321742|gb peptide chain release factor 2
putative {Arabidopsis thaliana}, partial (22%)
Length = 411
Score = 24.3 bits (51), Expect = 7.3
Identities = 8/22 (36%), Positives = 11/22 (49%)
Frame = +1
Query: 60 FDKWANDMGYSVAAGNEVPSVW 81
+ WA GY V E+P+ W
Sbjct: 1 YKSWAQRRGYKVTVMEELPASW 66
>TC89841 similar to PIR|T02307|T02307 probable membrane transporter
At2g34190 [imported] - Arabidopsis thaliana, partial
(63%)
Length = 1165
Score = 24.3 bits (51), Expect = 7.3
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 4/25 (16%)
Frame = +3
Query: 3 RTLHGPLHA-AGY---FLNPQFHSS 23
R LHGP H AG+ FLN F+SS
Sbjct: 750 RALHGPAHTKAGWFNDFLNTIFYSS 824
>TC81047 weakly similar to GP|20268776|gb|AAM14091.1 unknown protein
{Arabidopsis thaliana}, partial (35%)
Length = 626
Score = 23.9 bits (50), Expect = 9.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 6 HGPLHAAGYFLNPQFHSSHG 25
H LH+A + +N HSS G
Sbjct: 164 HSLLHSASHMVNISLHSSQG 223
>TC93828
Length = 499
Score = 23.9 bits (50), Expect = 9.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 61 DKWANDMGYSVAAGNEVPSVWWSPF 85
D+W N M ++ N V VW F
Sbjct: 61 DRWRNKMSENIKEENRVVGVWKPTF 135
>AW774578 similar to GP|14581445|gb protein kinase AtSIK {Arabidopsis
thaliana}, partial (29%)
Length = 688
Score = 23.9 bits (50), Expect = 9.6
Identities = 9/22 (40%), Positives = 12/22 (53%)
Frame = -3
Query: 63 WANDMGYSVAAGNEVPSVWWSP 84
W ND+ S+AAG +W P
Sbjct: 155 WTNDLHVSIAAGLHQSFLWIRP 90
>TC89808 similar to GP|5903062|gb|AAD55621.1| Is a member of PF|00534
Glycosyl transferases group 1. EST gb|N96702 comes from
this gene., partial (27%)
Length = 771
Score = 23.9 bits (50), Expect = 9.6
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 12 AGYFLNPQFHSSHGFRDDIEGKGGLHDCITRMVADPEERAK 52
AG++LN F SSH F ++ I + P ER+K
Sbjct: 124 AGWYLNFMFSSSHHFCHCLDCDSERKTNIFTLCKTPFERSK 2
>TC81545 similar to GP|15100055|gb|AAK84223.1 transcription factor bZIP61
{Arabidopsis thaliana}, partial (12%)
Length = 596
Score = 23.9 bits (50), Expect = 9.6
Identities = 9/24 (37%), Positives = 13/24 (53%)
Frame = -2
Query: 77 VPSVWWSPFGKGLPELQKFVSCIK 100
VP WW+ + P ++ FV C K
Sbjct: 430 VPLFWWTRSQETRPPMKGFVDCWK 359
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.333 0.149 0.525
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,060,668
Number of Sequences: 36976
Number of extensions: 52279
Number of successful extensions: 277
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of query: 119
length of database: 9,014,727
effective HSP length: 95
effective length of query: 24
effective length of database: 5,502,007
effective search space: 132048168
effective search space used: 132048168
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.9 bits)
Medicago: description of AC136841.8