BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136840.1 + phase: 0 /pseudo
(1308 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ497561 weakly similar to GP|10140689|gb putative non-LTR retro... 51 3e-06
BQ148771 50 7e-06
BG646730 46 1e-04
BG584442 43 7e-04
BG586862 42 0.002
TC81772 41 0.003
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot... 35 0.016
TC91981 30 0.058
BG644716 homologue to GP|7298552|gb| brat gene product {Drosophi... 27 0.61
TC93101 30 4.7
TC88618 weakly similar to PIR|T48397|T48397 S-receptor kinase-li... 30 6.1
AW586908 weakly similar to GP|2104814|emb| pleiotropic effects o... 25 6.8
BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At... 30 8.0
>AJ497561 weakly similar to GP|10140689|gb putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (2%)
Length = 621
Score = 50.8 bits (120), Expect = 3e-06
Identities = 25/56 (44%), Positives = 36/56 (63%)
Frame = +2
Query: 881 LLS*CLKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRV 936
LLS LK +YFP+ DF A++G NPS+TWRS++ + ++ W +GDG I V
Sbjct: 413 LLSKILKFKYFPQWDFSYANLGHNPSFTWRSLLSTQ-SLLTLGHRWMIGDGSQINV 577
>BQ148771
Length = 680
Score = 49.7 bits (117), Expect = 7e-06
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Frame = -3
Query: 810 VVPNG*CEHIESMISRFWWGSKQGERKIHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSK 869
++P E I+ + +F WG + R+ H + + + K K + G+G R +N A + K
Sbjct: 474 IIPKACIEEIQKLQRKFVWGDTEVSRRYHAVGWETMSKPKTIYGLGLRRLDVMNKACIMK 295
Query: 870 QGWRILHNEELLLS*CLKGRYFPRGDFLKASVGFNP--SYTWRSIMHAKFEV----IDKV 923
GW I L + ++G+Y R + L+ P S W++++ E+ +D
Sbjct: 294 LGWSIYSGSNSLCTEVMRGKY-QRSESLEEIFLEKPTDSSLWKALVKLWPEIERNLVDSN 118
Query: 924 GVW 926
G W
Sbjct: 117 GNW 109
>BG646730
Length = 799
Score = 45.8 bits (107), Expect = 1e-04
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +1
Query: 901 VGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKDN 940
+G PSY WRS+ + K +VID W + +G+N+R+WKD+
Sbjct: 385 IGNQPSYAWRSMFNIK-DVIDLGSRWSISNGQNVRIWKDD 501
>BG584442
Length = 775
Score = 43.1 bits (100), Expect = 7e-04
Identities = 25/70 (35%), Positives = 36/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 813 NG*CEHIESMISRFWWGSKQGERK-IHWIR*DEVCKNKKVGGMGFRTFKELNLAMLSKQG 871
N + IE +++ F W RK +HW+ *+++ +K GGMGF F N+ ML KQ
Sbjct: 493 NSQVDEIEKIMNTFSWVHVGENRKGMHWMS*EKLFVHKNYGGMGFTDFTTFNIPMLGKQV 672
Query: 872 WRILHNEELL 881
L N L
Sbjct: 673 *SFLLNRTTL 702
>BG586862
Length = 804
Score = 42.0 bits (97), Expect = 0.002
Identities = 23/64 (35%), Positives = 33/64 (50%)
Frame = -1
Query: 1099 FLSM*VEKVLWFAYPLGITTEFMPAPISFVEWIKNIIKQGDDETNKLIMAICNEIWFVRN 1158
FL+ V + WF LGI + F +WI N I + D+ET + A+ IW RN
Sbjct: 498 FLNCEVTQKEWFGSQLGINFH-SSGVLHFHDWITNFILKNDEETIIALTALLYSIWHARN 322
Query: 1159 KKMF 1162
+K+F
Sbjct: 321 QKVF 310
>TC81772
Length = 982
Score = 40.8 bits (94), Expect = 0.003
Identities = 18/55 (32%), Positives = 32/55 (57%)
Frame = -2
Query: 886 LKGRYFPRGDFLKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWKDN 940
L+ + F + L +G NPSY W S+ + V+++ W++GDG +I +W D+
Sbjct: 762 LRSKIFFTLELLGVVIGHNPSYIWCSV*TLRM-VLEEGHHWKIGDGSSINIWTDH 601
>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
dioxygenase1 {Pisum sativum}, partial (43%)
Length = 1865
Score = 34.7 bits (78), Expect(2) = 0.016
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -3
Query: 846 CKNKKVGGMGFRTFKELNLAMLSKQGWRILHNEELLLS*CLKGRYFPR 893
C + GG+G R + +N+++L+K WR+L ++ L L+ Y PR
Sbjct: 969 CLPRCKGGLGVRDIRLVNVSLLAKWWWRLLQDQSSLWKEVLEDIYGPR 826
Score = 22.7 bits (47), Expect(2) = 0.016
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
Frame = -2
Query: 894 GDFLKASVGFN-PSYT---WRSIMHAKFEVIDKVG------VWRVGDGRNIRVWKD 939
G+F G N P+Y W+ +M E + +V + +VGDGR+ WKD
Sbjct: 826 GEF*DHDGGENWPAYASRWWKDLM--SLEEVGRVRWFPRELIRKVGDGRSSFFWKD 665
>TC91981
Length = 1224
Score = 30.0 bits (66), Expect(2) = 0.058
Identities = 28/126 (22%), Positives = 44/126 (34%)
Frame = -2
Query: 1126 SFVEWIKNIIKQGDDETNKLIMAICNEIWFVRNKKMF*RN*CARSGCELETCNASGPAVQ 1185
SF WI+ +I + + + AI E+W ++K F
Sbjct: 719 SFRNWIEQVIMNEEI*VIQWVFAIFYEVWRASSQKCF----------------------- 609
Query: 1186 *F**DTDASAESRLSHTYIKCTMDGPSTWLV*NQHRCS*TE*GWNMGTVSNC*GL*GCCC 1245
A ++ ++C++ WL * Q C + * MGT G C
Sbjct: 608 -----EGKDAPDAMTCAKLQCSLVCTCQWLF*TQC*CRRS**RRQMGTSFRGSRCRGSCS 444
Query: 1246 CCSMLE 1251
CC +LE
Sbjct: 443 CCGLLE 426
Score = 25.4 bits (54), Expect(2) = 0.058
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = -3
Query: 1268 KGVEFAKDMLFLNVIV 1283
KG EFAKD+LFL++ +
Sbjct: 376 KG*EFAKDILFLSIAI 329
>BG644716 homologue to GP|7298552|gb| brat gene product {Drosophila
melanogaster}, partial (2%)
Length = 339
Score = 26.9 bits (58), Expect(2) = 0.61
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 1232 GTVSNC*GL*GCCCC 1246
G+V +C L GCCCC
Sbjct: 170 GSVCSCRSLAGCCCC 214
Score = 25.0 bits (53), Expect(2) = 0.61
Identities = 8/28 (28%), Positives = 13/28 (45%)
Frame = +3
Query: 1243 CCCCCSMLENNDSSKFRYG*SYGDEKGV 1270
CCCCC E + + D++G+
Sbjct: 255 CCCCCPKEEEEEEKDEEEEEEHEDKRGI 338
>TC93101
Length = 675
Score = 30.4 bits (67), Expect = 4.7
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -1
Query: 1099 FLSM*VEKVLWFAYPLGITTEFMPAPISFVEWIKNIIKQGDDETNKLIMAICNEIWFVRN 1158
F+S + +WF L I + I+F +W+ + I +E I AI IW RN
Sbjct: 570 FMSCERTQRVWFGSQLSIRFPDN-STINFSDWLFDAISNQTEEIIIKISAITYSIWHARN 394
Query: 1159 KKMF 1162
K +F
Sbjct: 393 KAIF 382
>TC88618 weakly similar to PIR|T48397|T48397 S-receptor kinase-like protein -
Arabidopsis thaliana, partial (38%)
Length = 2304
Score = 30.0 bits (66), Expect = 6.1
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +3
Query: 1215 LV*NQHRCS*TE*G----WNMGTVSNC*GL*GCCCCCSMLENNDSSKFRY 1260
L *++ RC+ E*G WN G C G CC CC + + K Y
Sbjct: 1197 LF*SEERCTEKE*GRGYCWNRGF---CFGWDSCCWCCDLCSEVEKEKRGY 1337
>AW586908 weakly similar to GP|2104814|emb| pleiotropic effects on cellular
differentiation and slug behaviour {Dictyostelium
discoideum}, partial (8%)
Length = 668
Score = 24.6 bits (52), Expect(2) = 6.8
Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 3/15 (20%)
Frame = -3
Query: 1243 CCCCCSM---LENND 1254
CCCCCS + NND
Sbjct: 99 CCCCCSWSNGIGNND 55
Score = 23.5 bits (49), Expect(2) = 6.8
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -3
Query: 1232 GTVSNC*GL*GCCCC 1246
G C* *GCCCC
Sbjct: 186 GCCGLC*VS*GCCCC 142
>BG587113 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (10%)
Length = 767
Score = 29.6 bits (65), Expect = 8.0
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 897 LKASVGFNPSYTWRSIMHAKFEVIDKVGVWRVGDGRNIRVWK 938
L A +G SY WRSI H+ +I + +G+G N +W+
Sbjct: 762 LNAPLGSWASYAWRSI-HSAQHLIKQGAKVIIGNGENTNIWE 640
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.358 0.160 0.572
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,116,128
Number of Sequences: 36976
Number of extensions: 659017
Number of successful extensions: 9232
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 2819
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 5147
Number of HSP's gapped (non-prelim): 4232
length of query: 1308
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1200
effective length of database: 5,021,319
effective search space: 6025582800
effective search space used: 6025582800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 64 (29.3 bits)
Medicago: description of AC136840.1