TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136506.11 - phase: 0 /pseudo
         (1043 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF643308 similar to GP|14194169|gb At1g05960/T21E18_20 {Arabidop...   249  3e-66
BF639510 similar to GP|14194169|gb At1g05960/T21E18_20 {Arabidop...   237  2e-62
AW690434 similar to PIR|T01764|T017 hypothetical protein A_IG002...   208  1e-53
TC81868 homologue to PIR|T09538|T09538 acetyl-CoA carboxylase (E...    31  2.8
BF645128 homologue to PIR|T48004|T48 multifunctional aminoacyl-t...    30  6.3
TC91010 similar to PIR|T48004|T48004 multifunctional aminoacyl-t...    30  6.3
TC85991 similar to GP|15293159|gb|AAK93690.1 unknown protein {Ar...    29  8.2
TC82733 similar to GP|10177404|dbj|BAB10535. gene_id:K24M7.12~pi...    29  8.2
TC85990 similar to GP|15293159|gb|AAK93690.1 unknown protein {Ar...    29  8.2

>BF643308 similar to GP|14194169|gb At1g05960/T21E18_20 {Arabidopsis
           thaliana}, partial (23%)
          Length = 629

 Score =  249 bits (637), Expect = 3e-66
 Identities = 118/172 (68%), Positives = 141/172 (81%)
 Frame = +2

Query: 1   MSVISRNIWPVCGSLCCFCPALRERSRHPIKRYKKLLADIFPRTPEEEPNDRKISKLCEY 60
           M V+SR + P CG+LC FCP+LR RSR P+KRYKKL+A+I PR    E NDRKI KLCEY
Sbjct: 113 MGVMSRRVVPACGNLCIFCPSLRARSRQPVKRYKKLIAEILPRNKVAELNDRKIGKLCEY 292

Query: 61  ASKNPLRVPKITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCRDQMPLFASSLLSII 120
           ASKNPLR+PKIT  LEQRCYK+LR E++ +VKV++CIYRKLL SCR+Q+PLFASSLL II
Sbjct: 293 ASKNPLRIPKITENLEQRCYKDLRNESFGSVKVILCIYRKLLSSCREQIPLFASSLLGII 472

Query: 121 QILLDQSRQDEVQILGCQTLFDFVNNQRDGTYMFNLDSFILKLCHLAQQVGD 172
           + LL+Q+R DEV+ILGC TL DF+  Q DGTYMFNL+ F  KLC LAQ+VGD
Sbjct: 473 RTLLEQTRADEVRILGCNTLVDFIIFQTDGTYMFNLEGFYPKLCQLAQEVGD 628


>BF639510 similar to GP|14194169|gb At1g05960/T21E18_20 {Arabidopsis
           thaliana}, partial (21%)
          Length = 548

 Score =  237 bits (605), Expect = 2e-62
 Identities = 110/159 (69%), Positives = 131/159 (82%)
 Frame = +3

Query: 1   MSVISRNIWPVCGSLCCFCPALRERSRHPIKRYKKLLADIFPRTPEEEPNDRKISKLCEY 60
           M V+SR + P CG+LCC CPALR  SR P+KRYKKLLA+IFPR    EPNDRKI KLC+Y
Sbjct: 63  MGVMSRRVVPACGNLCCVCPALRASSRQPVKRYKKLLAEIFPRNQVAEPNDRKIGKLCDY 242

Query: 61  ASKNPLRVPKITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCRDQMPLFASSLLSII 120
           ASKNPLR+PKIT  LEQ CYK+LR E + +V+VV+CIYRKLL SC++QMPLFA SLL II
Sbjct: 243 ASKNPLRIPKITDNLEQTCYKDLRNEVFGSVRVVLCIYRKLLSSCKEQMPLFAGSLLQII 422

Query: 121 QILLDQSRQDEVQILGCQTLFDFVNNQRDGTYMFNLDSF 159
           + LL+Q+RQDE++ILGC TL DF+N Q DGTYMFNL+ F
Sbjct: 423 RTLLEQTRQDEIRILGCNTLSDFINCQTDGTYMFNLEGF 539


>AW690434 similar to PIR|T01764|T017 hypothetical protein A_IG002P16.24 -
           Arabidopsis thaliana, partial (9%)
          Length = 644

 Score =  208 bits (529), Expect = 1e-53
 Identities = 99/189 (52%), Positives = 135/189 (71%)
 Frame = +1

Query: 1   MSVISRNIWPVCGSLCCFCPALRERSRHPIKRYKKLLADIFPRTPEEEPNDRKISKLCEY 60
           M VISR I+P C S+C  CPALR RSR P+KRY+KLLADIFP++P+E PN+RKI KLCEY
Sbjct: 58  MGVISRKIFPACESMCVCCPALRSRSRQPVKRYRKLLADIFPKSPDELPNERKIVKLCEY 237

Query: 61  ASKNPLRVPKITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCRDQMPLFASSLLSII 120
           A+KNP R+PKI  YLE+RCYKELR+E+ + VK++   + KLL  C+ Q+  FA  +L++ 
Sbjct: 238 AAKNPFRIPKIAKYLEERCYKELRSEHIKLVKIIAESFNKLLSICKAQITYFAVDVLNVT 417

Query: 121 QILLDQSRQDEVQILGCQTLFDFVNNQRDGTYMFNLDSFILKLCHLAQQVGDDGKVEHLR 180
             LLD S+ + +Q LGCQ+L  F+  Q D TY  N++  + K+C L+Q+ G+  +   L 
Sbjct: 418 SELLDYSKDEAIQALGCQSLTRFIYCQVDSTYTHNIEKLVRKVCMLSQEPGETHENRCLX 597

Query: 181 ASGLQVLSS 189
           AS LQ LS+
Sbjct: 598 ASSLQCLSA 624


>TC81868 homologue to PIR|T09538|T09538 acetyl-CoA carboxylase (EC 6.4.1.2)
           - alfalfa, partial (14%)
          Length = 994

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 495 TPHIFSCSCAIVSLSSTFIFKSPLGKGNRYSKNALEKCLCIFLFSST 541
           TPH FS   +   LSST  F+S     N +     + C CI + S T
Sbjct: 464 TPHFFSLCFSTSVLSSTPFFRSTCSSKNSHVAIRPDLCHCILMLSLT 324


>BF645128 homologue to PIR|T48004|T48 multifunctional aminoacyl-tRNA
           ligase-like protein - Arabidopsis thaliana, partial
           (28%)
          Length = 657

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 216 GCFGCFGKLWGY 227
           GCFGCFG  WG+
Sbjct: 180 GCFGCFGCFWGF 145


>TC91010 similar to PIR|T48004|T48004 multifunctional aminoacyl-tRNA
           ligase-like protein - Arabidopsis thaliana, partial
           (24%)
          Length = 638

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 216 GCFGCFGKLWGY 227
           GCFGCFG  WG+
Sbjct: 158 GCFGCFGCFWGF 123


>TC85991 similar to GP|15293159|gb|AAK93690.1 unknown protein {Arabidopsis
           thaliana}, partial (30%)
          Length = 649

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
 Frame = -2

Query: 12  CGSLCCFCPALRERSRHPIKRYKKLL-------ADIFPRTPEEEPNDRKIS-KLCEYASK 63
           C S C    +L ER+ H +  Y ++L       A+I P  P  +PN      + C    +
Sbjct: 438 CSSTCMHVISLTERT-HKV*PYTRILLKMQI*LAEIPPLVPSLKPNLANYQHRSCSPCCQ 262

Query: 64  NPLRVPKITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCR 106
            PL + +    L    Y      + +  +V +C+  ++L SCR
Sbjct: 261 LPLFLARKDKELY---YPTCLAASEETFEVNVCVLLEILASCR 142


>TC82733 similar to GP|10177404|dbj|BAB10535.
           gene_id:K24M7.12~pir||S42136~similar to unknown protein
           {Arabidopsis thaliana}, partial (57%)
          Length = 710

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/42 (33%), Positives = 21/42 (49%)
 Frame = +3

Query: 24  ERSRHPIKRYKKLLADIFPRTPEEEPNDRKISKLCEYASKNP 65
           +R R   KRYK+   ++FP+     PND    K  ++  K P
Sbjct: 87  QRQRLAKKRYKEEHPELFPKVDPTPPNDPSKKKKNKFKRKKP 212


>TC85990 similar to GP|15293159|gb|AAK93690.1 unknown protein {Arabidopsis
           thaliana}, partial (31%)
          Length = 1333

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
 Frame = -1

Query: 12  CGSLCCFCPALRERSRHPIKRYKKLL-------ADIFPRTPEEEPNDRKIS-KLCEYASK 63
           C S C    +L ER+ H +  Y ++L       A+I P  P  +PN      + C    +
Sbjct: 979 CSSTCMHVISLTERT-HKV*PYTRILLKMQI*LAEIPPLVPSLKPNLANYQHRSCSPCCQ 803

Query: 64  NPLRVPKITSYLEQRCYKELRTENYQAVKVVICIYRKLLVSCR 106
            PL + +    L    Y      + +  +V +C+  ++L SCR
Sbjct: 802 LPLFLARKDKELY---YPTCLAASEETFEVNVCVLLEILASCR 683


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.361    0.161    0.605 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,298,157
Number of Sequences: 36976
Number of extensions: 598051
Number of successful extensions: 6216
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1780
Number of HSP's successfully gapped in prelim test: 277
Number of HSP's that attempted gapping in prelim test: 4369
Number of HSP's gapped (non-prelim): 2234
length of query: 1043
length of database: 9,014,727
effective HSP length: 106
effective length of query: 937
effective length of database: 5,095,271
effective search space: 4774268927
effective search space used: 4774268927
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 63 (28.9 bits)