Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136504.6 - phase: 0 /pseudo
         (417 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

CA990754 similar to GP|21397269|g Unknown protein {Oryza sativa ...   324  3e-89
BG645929 similar to GP|22137178|gb AT4g35920/F4B14_190 {Arabidop...    94  6e-36
TC80164 similar to PIR|A84670|A84670 probable nucleotide-binding...    32  0.35
TC87503 similar to SP|Q43111|PME3_PHAVU Pectinesterase 3 precurs...    32  0.59
AW208057 similar to PIR|F96745|F967 unknown protein T9N14.4 [imp...    32  0.59
TC89448 similar to PIR|C84864|C84864 hypothetical protein At2g43...    32  0.59
BG584702 weakly similar to PIR|T04811|T048 STIG1 protein homolog...    31  1.0
BF520164 weakly similar to GP|21593762|gb| unknown {Arabidopsis ...    26  2.2
BG454439 similar to GP|14517399|gb At2g32810/F24L7.5 {Arabidopsi...    30  2.3
TC87372 similar to GP|14091469|gb|AAK53758.1 putative potassium ...    30  2.3
TC76625 similar to SP|O81363|RS4_PRUAR 40S ribosomal protein S4....    29  2.9
TC83638 similar to GP|19698943|gb|AAL91207.1 unknown protein {Ar...    29  2.9
TC89297 weakly similar to GP|9294431|dbj|BAB02551.1 gene_id:MMB1...    29  3.8
TC83396 similar to GP|22858664|gb|AAN05792.1 unknown {Gossypium ...    28  5.0
TC88969 similar to GP|17381224|gb|AAL36424.1 unknown protein {Ar...    28  6.6
TC80576 similar to GP|11139266|gb|AAG31651.1 PRLI-interacting fa...    28  8.6

>CA990754 similar to GP|21397269|g Unknown protein {Oryza sativa (japonica
           cultivar-group)}, partial (15%)
          Length = 700

 Score =  324 bits (831), Expect = 3e-89
 Identities = 168/223 (75%), Positives = 188/223 (83%)
 Frame = +3

Query: 52  LIGNLLDQLKISELKKYPETREPLEQLEDALRRSYILVNSCQDRSYLYLLAMGWNIVYQF 111
           LIGNLL+QLKISELK+YPETREPLEQLEDALRRSY+LV+SCQDRSYLYLLAMGWNIVYQF
Sbjct: 3   LIGNLLEQLKISELKRYPETREPLEQLEDALRRSYMLVHSCQDRSYLYLLAMGWNIVYQF 182

Query: 112 RKAQNEIDRYLRLVPLITLVDNARATRVRERLEVIEKDQCAYTLDDEDQKVQTVFMKPEH 171
           RKAQNEIDRYLRLVPLITLVDNAR   VRERLEVIE DQ  YTLDDEDQ+  TV +KP+ 
Sbjct: 183 RKAQNEIDRYLRLVPLITLVDNAR---VRERLEVIEHDQREYTLDDEDQQAHTVILKPDP 353

Query: 172 DKEDTVVLKKTLSCSYPNFSFTEALKKENEKLQLELHHSQANMDINQCEFIQRLLDVTNF 231
           DKEDT VLKKTLSCSYPN +F EA+KKE EKL LEL  SQAN+D+NQCE IQRLL+VT  
Sbjct: 354 DKEDTAVLKKTLSCSYPNCTFPEAIKKEKEKLNLELQRSQANLDMNQCEVIQRLLEVTKV 533

Query: 232 AAYSLPEKLSPEDNYQIVEYSNNSHSDANGSKGHSSNEKHHKK 274
           A YSLP+K SPE ++   +  N S+SD+N  K HSS+E   +K
Sbjct: 534 AEYSLPDKCSPEKSH---KKENYSYSDSNDDKVHSSDENTIRK 653


>BG645929 similar to GP|22137178|gb AT4g35920/F4B14_190 {Arabidopsis
           thaliana}, partial (24%)
          Length = 676

 Score = 94.4 bits (233), Expect(2) = 6e-36
 Identities = 49/60 (81%), Positives = 51/60 (84%), Gaps = 7/60 (11%)
 Frame = -2

Query: 257 SDANGSKGHSSNEKHHKK-------KPKFQKRIRCQLEVHISRKIGILIYLLVVLNLIFI 309
           SDANGSKGHS NEK HKK       +PKFQKRIRCQLEVHISRKIGILIYLLVVLNLIF+
Sbjct: 675 SDANGSKGHSFNEKPHKKSDIFHHQEPKFQKRIRCQLEVHISRKIGILIYLLVVLNLIFV 496



 Score = 74.7 bits (182), Expect(2) = 6e-36
 Identities = 36/36 (100%), Positives = 36/36 (100%)
 Frame = -3

Query: 337 IFCRSMQ*LYCIFVGFILLLLYLLHKEEA*EDDEHS 372
           IFCRSMQ*LYCIFVGFILLLLYLLHKEEA*EDDEHS
Sbjct: 428 IFCRSMQ*LYCIFVGFILLLLYLLHKEEA*EDDEHS 321



 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 39/90 (43%), Positives = 43/90 (47%), Gaps = 21/90 (23%)
 Frame = -1

Query: 315 IKTFFYPCGTFSKIATVATNRPI---------FCRSMQ*LYCIFVGFILLLLYLLHKEEA 365
           IKTFFYPCGTFSKIATVATNRPI            S+    C +   I   L  +     
Sbjct: 496 IKTFFYPCGTFSKIATVATNRPISSAEVCNDFIAYSLVLSCCCYTCCIRRKLRKMMNIPG 317

Query: 366 *EDDEH------------SEWREVQIRGVY 383
              D+              EWREVQIRGVY
Sbjct: 316 GYVDDFLSHLMCCSCALVQEWREVQIRGVY 227


>TC80164 similar to PIR|A84670|A84670 probable nucleotide-binding protein
           [imported] - Arabidopsis thaliana, partial (31%)
          Length = 1215

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 23/113 (20%), Positives = 43/113 (37%)
 Frame = +3

Query: 169 PEHDKEDTVVLKKTLSCSYPNFSFTEALKKENEKLQLELHHSQANMDINQCEFIQRLLDV 228
           P+  +    +LK  +    P++     L  +    +    H Q N  ++    I+    V
Sbjct: 378 PDETRASRQILKDYIDGKLPHYEMPPGLSTQELASEDSNEHDQVNPHVSDASDIEDSSVV 557

Query: 229 TNFAAYSLPEKLSPEDNYQIVEYSNNSHSDANGSKGHSSNEKHHKKKPKFQKR 281
               A  L   L   D+    + +N   S+    K    ++KHH+K P+ + R
Sbjct: 558 ETELAPKLEHVL---DDLSSFDMANGLASNKVAPKKTKESQKHHRKPPRTKNR 707


>TC87503 similar to SP|Q43111|PME3_PHAVU Pectinesterase 3 precursor (EC
           3.1.1.11) (Pectin methylesterase 3) (PE 3)., partial
           (93%)
          Length = 2088

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +1

Query: 197 KKENEKLQLELHHSQANMDINQCEFIQRLLDVTNFAAYSLPEK--LSPEDNYQIVEYSNN 254
           K+++ KLQL+  H++ N +    E  QRL         S+P+K   +  ++  ++ +S++
Sbjct: 1   KQQHNKLQLQKRHTKQNNNNGYYEIFQRLWQSRRNRTTSIPKKDT*THHNHNHLLHHSSS 180

Query: 255 SHSDANGSKGHS 266
           SH   +    H+
Sbjct: 181 SHHSCSCRNPHT 216


>AW208057 similar to PIR|F96745|F967 unknown protein T9N14.4 [imported] -
           Arabidopsis thaliana, partial (8%)
          Length = 421

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 32/120 (26%), Positives = 50/120 (41%)
 Frame = +2

Query: 172 DKEDTVVLKKTLSCSYPNFSFTEALKKENEKLQLELHHSQANMDINQCEFIQRLLDVTNF 231
           ++E ++ L+ TL   YP   FT    K++    L L  S+AN D           +   F
Sbjct: 77  ERERSMALEPTLL--YPQDPFTYGFNKDHYNYNL-LTDSEANFDYTNFNLQN---EEQGF 238

Query: 232 AAYSLPEKLSPEDNYQIVEYSNNSHSDANGSKGHSSNEKHHKKKPKFQKRIRCQLEVHIS 291
            +  L  K    +NY    +SNN  S  +     S ++K   K  K ++ I  Q   HI+
Sbjct: 239 VSTFL--KNQQTENYPYENWSNNCPSLDSSISTRSRSKKRRVKTSKNKEEIENQRMTHIA 412


>TC89448 similar to PIR|C84864|C84864 hypothetical protein At2g43280
           [imported] - Arabidopsis thaliana, partial (80%)
          Length = 1177

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 19/82 (23%), Positives = 41/82 (49%)
 Frame = +2

Query: 145 VIEKDQCAYTLDDEDQKVQTVFMKPEHDKEDTVVLKKTLSCSYPNFSFTEALKKENEKLQ 204
           V+   +   T+D++D+K+Q + ++    K   V  ++ L C      +   +++ ++KL 
Sbjct: 611 VVSPREARQTMDEKDKKIQELTVELRIKKRLCVTYQEQLKC------YMNIVEEYSDKLS 772

Query: 205 LELHHSQANMDINQCEFIQRLL 226
             +HH   N  + + E I+ LL
Sbjct: 773 ARIHHILDN--LKEYESIEELL 832


>BG584702 weakly similar to PIR|T04811|T048 STIG1 protein homolog F10M23.220
           - Arabidopsis thaliana, partial (43%)
          Length = 719

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 249 VEYSNNSHSDANGSKGHSSNEKHHKKK 275
           V  SNN+HS+ +G   H  NE HH K+
Sbjct: 73  VPKSNNNHSNNHGFVPHYHNENHHTKR 153


>BF520164 weakly similar to GP|21593762|gb| unknown {Arabidopsis thaliana},
           partial (31%)
          Length = 585

 Score = 26.2 bits (56), Expect(2) = 2.2
 Identities = 11/24 (45%), Positives = 15/24 (61%)
 Frame = +3

Query: 271 HHKKKPKFQKRIRCQLEVHISRKI 294
           HH+K+P  + R+RC    H SR I
Sbjct: 297 HHRKRPFSRPRMRCLPRRHNSRTI 368



 Score = 21.9 bits (45), Expect(2) = 2.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 297 LIYLLVVLNLIFIFSF 312
           L  L V LNLI +FSF
Sbjct: 440 LFVLFVELNLILLFSF 487


>BG454439 similar to GP|14517399|gb At2g32810/F24L7.5 {Arabidopsis thaliana},
           partial (29%)
          Length = 669

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/32 (43%), Positives = 20/32 (61%), Gaps = 2/32 (6%)
 Frame = -3

Query: 222 IQRLLDVTNF--AAYSLPEKLSPEDNYQIVEY 251
           I R L + +F  AA+S   K+SP + Y +VEY
Sbjct: 520 ISRTLSIASFG*AAFSFQNKISPSETYILVEY 425


>TC87372 similar to GP|14091469|gb|AAK53758.1 putative potassium transporter
           HAK1p {Mesembryanthemum crystallinum}, partial (38%)
          Length = 1660

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 379 IRGVYGMTSSSIFLKHCHIENVYLSKF 405
           I GVY   S S+F+ HC   N+YL  F
Sbjct: 108 IIGVYVSVSYSVFMCHCQCRNLYLLMF 188


>TC76625 similar to SP|O81363|RS4_PRUAR 40S ribosomal protein S4. [Apricot]
           {Prunus armeniaca}, partial (13%)
          Length = 1172

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -1

Query: 179 LKKTLSCSYPNFSFTEALKKENEKLQLELHHSQANMDINQCEFIQRLLDVTNFAAYSLPE 238
           L KTL+  YP       +K +N  LQL  ++         C+    L D  +F +  + +
Sbjct: 626 LSKTLTHYYPFAGRLSWIKPQNHLLQLHCNNKGVQFLEATCDIT--LKDFGSFDSTHVVQ 453

Query: 239 KLSPEDNYQI 248
           KL P+ NY +
Sbjct: 452 KLVPKINYDV 423


>TC83638 similar to GP|19698943|gb|AAL91207.1 unknown protein {Arabidopsis
           thaliana}, partial (16%)
          Length = 663

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = +2

Query: 213 NMDINQCEFIQRLLD--VTNFAAYSLPEKLSPEDNYQIVEYSNNSHSDANGSKGHSSNEK 270
           N + NQ   +  L D  V   A    P   +PE    I +Y  +   D     GHS+   
Sbjct: 104 NPEANQLPEVDSLPDGLVEGTAEPVAPATPTPEQQKPISDYKEDGFIDC----GHSNELS 271

Query: 271 HHKKKPKFQKRIRCQLEVHIS 291
           +   + +FQ    C +E HI+
Sbjct: 272 NMPGEKEFQNNHDCSVEAHIT 334


>TC89297 weakly similar to GP|9294431|dbj|BAB02551.1
           gene_id:MMB12.13~unknown protein {Arabidopsis thaliana},
           partial (56%)
          Length = 891

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 3/42 (7%)
 Frame = -3

Query: 216 INQCEFIQRLLDVTNFAAYSL---PEKLSPEDNYQIVEYSNN 254
           IN CEFI   L   N  + SL   PE + P D  ++  Y N+
Sbjct: 604 INDCEFIVVFLMKYNLGSSSLPTKPEMIKPRDTNKLFRYINS 479


>TC83396 similar to GP|22858664|gb|AAN05792.1 unknown {Gossypium hirsutum},
           partial (40%)
          Length = 921

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 17/57 (29%), Positives = 30/57 (51%)
 Frame = +3

Query: 167 MKPEHDKEDTVVLKKTLSCSYPNFSFTEALKKENEKLQLELHHSQANMDINQCEFIQ 223
           +K EH+K+  V L + L     ++  TE  KKE EKL+ ++  +   +D    E ++
Sbjct: 90  IKMEHEKK--VELVRKLEMRRADYVKTEKAKKEVEKLESQMMVASQTIDSTSAEIVK 254


>TC88969 similar to GP|17381224|gb|AAL36424.1 unknown protein {Arabidopsis
           thaliana}, partial (7%)
          Length = 772

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 353 ILLLLYLLHKEEA*EDDEHSEWREVQIRGVYGMTSSSIF 391
           ILL    L+K EA + DEH      +++ ++GM +SS F
Sbjct: 691 ILLCSIFLYKREATQIDEHIHQELKRLKPLFGMRTSS*F 575


>TC80576 similar to GP|11139266|gb|AAG31651.1 PRLI-interacting factor K
           {Arabidopsis thaliana}, partial (41%)
          Length = 933

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 23/70 (32%), Positives = 33/70 (46%), Gaps = 3/70 (4%)
 Frame = -3

Query: 296 ILIYLLVVLNLIFIFSFAGIKTFFYPCGTFSKIATVATNRPIFCRSMQ*LY---CIFVGF 352
           + ++LLV L L    SF+GI T      + S     + N   F R +  L    C F+ F
Sbjct: 274 VFLHLLVSLEL----SFSGINT----TRSLSSFNGFSLNTSFFFRFLFLLEFQSCFFLSF 119

Query: 353 ILLLLYLLHK 362
           +L  LYLL +
Sbjct: 118 LLFFLYLLSR 89


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.325    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,701,322
Number of Sequences: 36976
Number of extensions: 205773
Number of successful extensions: 1531
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1526
length of query: 417
length of database: 9,014,727
effective HSP length: 99
effective length of query: 318
effective length of database: 5,354,103
effective search space: 1702604754
effective search space used: 1702604754
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)


Medicago: description of AC136504.6