BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136504.5 + phase: 0
(201 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89098 similar to GP|10177124|dbj|BAB10414. gene_id:K2A18.17~un... 402 e-113
BQ143960 weakly similar to SP|P21997|SSGP_ Sulfated surface glyc... 33 0.097
TC83200 weakly similar to GP|21554083|gb|AAM63164.1 unknown {Ara... 32 0.17
BF004918 similar to GP|21553624|gb unknown {Arabidopsis thaliana... 31 0.28
TC91040 similar to GP|11994500|dbj|BAB02565. gene_id:F4B12.2~unk... 31 0.37
AL369406 similar to GP|14532594|gb| putative dihydroxyacid dehyd... 30 0.63
TC78153 homologue to GP|21617923|gb|AAM66973.1 unknown {Arabidop... 29 1.1
BQ137626 homologue to PIR|S67655|S67 probable membrane protein Y... 29 1.4
BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox ... 29 1.4
TC86556 similar to PIR|T07598|T07598 proline-rich protein GPP1 -... 29 1.4
TC90731 weakly similar to GP|16648683|gb|AAL25534.1 AT3g58470/F1... 29 1.4
TC78805 similar to PIR|T05236|T05236 hypothetical protein F18A5.... 28 1.8
BF647088 weakly similar to PIR|D86338|D86 protein F5M15.18 [impo... 28 1.8
TC88105 similar to GP|21593085|gb|AAM65034.1 Putative protein ki... 28 1.8
TC93915 similar to GP|10178125|dbj|BAB11537. gene_id:MOP10.2~unk... 28 2.4
BQ751763 similar to GP|18894036|gb| hypothetical protein {Pyroco... 28 2.4
TC82777 weakly similar to PIR|D85438|D85438 hypothetical protein... 28 3.1
TC82099 weakly similar to GP|21740720|emb|CAD40841. OSJNBa0086B1... 28 3.1
TC76323 homologue to GP|12054507|emb|CAC20221. ribosomal protein... 28 3.1
AW981325 similar to GP|10177256|dbj zinc-binding protein-like {A... 28 3.1
>TC89098 similar to GP|10177124|dbj|BAB10414. gene_id:K2A18.17~unknown
protein {Arabidopsis thaliana}, partial (61%)
Length = 999
Score = 402 bits (1033), Expect = e-113
Identities = 201/201 (100%), Positives = 201/201 (100%)
Frame = +1
Query: 1 MAFTHYLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEP 60
MAFTHYLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEP
Sbjct: 61 MAFTHYLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEP 240
Query: 61 EVAIATDSFTQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADITVVVIDEQQKES 120
EVAIATDSFTQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADITVVVIDEQQKES
Sbjct: 241 EVAIATDSFTQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADITVVVIDEQQKES 420
Query: 121 LPEHETQLSSIRWHLSEGGLKDYKLLERLGDGSKPTAIIGDVADELNLDLVVISMEAIHT 180
LPEHETQLSSIRWHLSEGGLKDYKLLERLGDGSKPTAIIGDVADELNLDLVVISMEAIHT
Sbjct: 421 LPEHETQLSSIRWHLSEGGLKDYKLLERLGDGSKPTAIIGDVADELNLDLVVISMEAIHT 600
Query: 181 KHIDANLLAEFIPCPVMLLPL 201
KHIDANLLAEFIPCPVMLLPL
Sbjct: 601 KHIDANLLAEFIPCPVMLLPL 663
>BQ143960 weakly similar to SP|P21997|SSGP_ Sulfated surface glycoprotein 185
(SSG 185). {Volvox carteri}, partial (13%)
Length = 1023
Score = 32.7 bits (73), Expect = 0.097
Identities = 21/52 (40%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Frame = +3
Query: 3 FTHYLPPLQLVKP--SLISPKPSL-FFNNPPISITSHFFNPPSTLHTLPSGI 51
F Y P L P S I+P PSL F PP+ + H+ NPP + T P I
Sbjct: 312 FLFYKPFYFLYNPLHSSITPLPSLPLFFIPPLPPSPHYINPPHIIPTTPHPI 467
>TC83200 weakly similar to GP|21554083|gb|AAM63164.1 unknown {Arabidopsis
thaliana}, partial (71%)
Length = 565
Score = 32.0 bits (71), Expect = 0.17
Identities = 22/65 (33%), Positives = 34/65 (51%), Gaps = 2/65 (3%)
Frame = -3
Query: 7 LPPLQLVKPSLISPKPSLFFNNPPISIT--SHFFNPPSTLHTLPSGIIVKAKPQEPEVAI 64
LPP Q P+ +P PSL + PP + S +PPS + + P I+ P+ P +
Sbjct: 443 LPPPQSPVPNSQAPPPSLSPSPPPPILVPPSQVLSPPSPILSPPIQILPSQSPR-PFPPL 267
Query: 65 ATDSF 69
++DSF
Sbjct: 266 SSDSF 252
>BF004918 similar to GP|21553624|gb unknown {Arabidopsis thaliana}, partial
(49%)
Length = 646
Score = 31.2 bits (69), Expect = 0.28
Identities = 17/43 (39%), Positives = 22/43 (50%)
Frame = +3
Query: 5 HYLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTL 47
H +P L L+ PSL P PSL + + H +PP LH L
Sbjct: 90 HNVPFLLLLNPSLF-PNPSLLLLSSHTHLNRHITSPPLDLHRL 215
>TC91040 similar to GP|11994500|dbj|BAB02565. gene_id:F4B12.2~unknown
protein {Arabidopsis thaliana}, partial (64%)
Length = 882
Score = 30.8 bits (68), Expect = 0.37
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Frame = +2
Query: 26 FNNPPISITSHFFNPPSTLHTL--PSGIIVKAKPQEPEVAIATDSFTQFKHLLLPITDRK 83
F N PIS+T+H F+ PS LH S I P + + K L PI D
Sbjct: 29 FTNLPISLTTHHFSSPSPLHKFHHNSHTIYAINPSQEVFLPLLNKLITAKVELSPIFDA- 205
Query: 84 PYLSEGTKQAIATTIALA 101
+ E + + ++ L+
Sbjct: 206 --IDESSSNQVTISVVLS 253
>AL369406 similar to GP|14532594|gb| putative dihydroxyacid dehydratase
{Arabidopsis thaliana}, partial (7%)
Length = 312
Score = 30.0 bits (66), Expect = 0.63
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 5 HYLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLP 48
H PP Q + S P P F PP+ + ++ NPPS LP
Sbjct: 276 HTPPP*QCSQLSFPQPTPPSFLLTPPLPLGAYT*NPPSPPIPLP 145
>TC78153 homologue to GP|21617923|gb|AAM66973.1 unknown {Arabidopsis
thaliana}, partial (34%)
Length = 986
Score = 29.3 bits (64), Expect = 1.1
Identities = 15/46 (32%), Positives = 24/46 (51%), Gaps = 4/46 (8%)
Frame = -2
Query: 27 NNPPISITSHFFNPPST----LHTLPSGIIVKAKPQEPEVAIATDS 68
NN P+ I++HFFNP +T + T+P + Q +A D+
Sbjct: 499 NNTPL*ISNHFFNPAATTVNGVFTVPDLVFFMTAKQSDADDVAIDA 362
>BQ137626 homologue to PIR|S67655|S67 probable membrane protein YDL112w -
yeast (Saccharomyces cerevisiae), partial (1%)
Length = 1101
Score = 28.9 bits (63), Expect = 1.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -1
Query: 5 HYLPPLQLVKPSLISPKPSLFFNNPPISITSHFF 38
H+L PL PSL++P PSL F++ P HFF
Sbjct: 183 HHLSPLTPCPPSLVTP-PSLIFSSYP----PHFF 97
>BQ141909 weakly similar to GP|14253159|emb VMP3 protein {Volvox carteri f.
nagariensis}, partial (13%)
Length = 1223
Score = 28.9 bits (63), Expect = 1.4
Identities = 22/70 (31%), Positives = 26/70 (36%)
Frame = -1
Query: 9 PLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEPEVAIATDS 68
P L P L SP PS +PP PPS+L P+ + P P A
Sbjct: 320 PFLLFLPPLSSPSPSSPLPSPP---------PPSSLFPSPTPPPLPPPPPPPPPASPFHP 168
Query: 69 FTQFKHLLLP 78
F H L P
Sbjct: 167 FFSSYHFLSP 138
>TC86556 similar to PIR|T07598|T07598 proline-rich protein GPP1 - potato,
partial (24%)
Length = 1250
Score = 28.9 bits (63), Expect = 1.4
Identities = 17/43 (39%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = +3
Query: 7 LPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPP-STLHTLP 48
LPP+ + KP ++ PKP + P I F PP L TLP
Sbjct: 450 LPPVPIYKPPVVIPKPPVVPIYKPPVILPPFKKPPCPPLPTLP 578
>TC90731 weakly similar to GP|16648683|gb|AAL25534.1 AT3g58470/F14P22_60
{Arabidopsis thaliana}, partial (76%)
Length = 866
Score = 28.9 bits (63), Expect = 1.4
Identities = 16/54 (29%), Positives = 27/54 (49%)
Frame = +3
Query: 70 TQFKHLLLPITDRKPYLSEGTKQAIATTIALANKYGADITVVVIDEQQKESLPE 123
++ K+ I PYLS+ + +A TI+ + G +++ E QKES E
Sbjct: 414 SELKNSYKVIVADPPYLSKECLEKVAETISFLRQPGESFLLLLTGEVQKESAAE 575
>TC78805 similar to PIR|T05236|T05236 hypothetical protein F18A5.60 -
Arabidopsis thaliana, partial (21%)
Length = 717
Score = 28.5 bits (62), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (56%)
Frame = -2
Query: 7 LPPLQLVKPSLISPKPSLFFNNPPISIT 34
+P + L P L+ KPSLFF P + T
Sbjct: 260 VPSILLTNPPLLLAKPSLFFAEPAVFFT 177
>BF647088 weakly similar to PIR|D86338|D86 protein F5M15.18 [imported] -
Arabidopsis thaliana, partial (2%)
Length = 678
Score = 28.5 bits (62), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (54%)
Frame = +3
Query: 14 KPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPS 49
KPS +S S F ++ PIS H P +TL + P+
Sbjct: 45 KPSTVSDPHSTFLHHTPISPPQHTPXPSTTLTSTPT 152
>TC88105 similar to GP|21593085|gb|AAM65034.1 Putative protein kinase
{Arabidopsis thaliana}, partial (72%)
Length = 2379
Score = 28.5 bits (62), Expect = 1.8
Identities = 17/70 (24%), Positives = 31/70 (44%)
Frame = -2
Query: 78 PITDRKPYLSEGTKQAIATTIALANKYGADITVVVIDEQQKESLPEHETQLSSIRWHLSE 137
P+ R YL + L+ D+ + ++ ++S H ++L S WH+ E
Sbjct: 1415 PLLPRAYYLPSSSASQPNLPQLLSGYNPLDLFL*LLQGAIRQSYTHHSSRLVSQNWHILE 1236
Query: 138 GGLKDYKLLE 147
++ Y LLE
Sbjct: 1235 LHIQKYPLLE 1206
>TC93915 similar to GP|10178125|dbj|BAB11537. gene_id:MOP10.2~unknown
protein {Arabidopsis thaliana}, partial (29%)
Length = 1001
Score = 28.1 bits (61), Expect = 2.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 15 PSLISPKPSLFFNNPPISITSHFFNPP--STLH-TLP 48
P+ + P +F NPP I H+ +PP T+H TLP
Sbjct: 207 PTTLPTNPIMFPPNPPPHIRQHYRHPPFYHTIHPTLP 317
>BQ751763 similar to GP|18894036|gb| hypothetical protein {Pyrococcus
furiosus DSM 3638}, partial (5%)
Length = 712
Score = 28.1 bits (61), Expect = 2.4
Identities = 13/28 (46%), Positives = 16/28 (56%)
Frame = -1
Query: 19 SPKPSLFFNNPPISITSHFFNPPSTLHT 46
SP PS+ PP S T++ NPPS T
Sbjct: 532 SPSPSMSTKKPPHSATTNGANPPSARPT 449
>TC82777 weakly similar to PIR|D85438|D85438 hypothetical protein AT4g37110
[imported] - Arabidopsis thaliana, partial (11%)
Length = 673
Score = 27.7 bits (60), Expect = 3.1
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 70 TQFKHLLLPITDRKPYLSEGTKQAIAT-TIALANKYGADI 108
TQF+HL++ IT R+P + AIA + A+ G DI
Sbjct: 272 TQFRHLIVYITSRQPTIFPAAAIAIANFSTRRASPLGIDI 153
>TC82099 weakly similar to GP|21740720|emb|CAD40841. OSJNBa0086B14.13 {Oryza
sativa}, partial (17%)
Length = 673
Score = 27.7 bits (60), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (53%)
Frame = -2
Query: 34 TSHFFNPPSTLHTLPSGIIVKAKPQEPEVAIATDSFT 70
TS +P ++ PSG++ K KP+EP A F+
Sbjct: 291 TS*LTSPSPSIGVRPSGMVSKQKPREPSKAFGPLDFS 181
>TC76323 homologue to GP|12054507|emb|CAC20221. ribosomal protein L2
{Glycine max}, complete
Length = 1031
Score = 27.7 bits (60), Expect = 3.1
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = +1
Query: 1 MAFTHYLPPLQLVKPSLISPKPSLFFNNPPISITSHFFNPPSTLHTLPSGIIVKAKPQEP 60
+ F H+ PPL+ V S+ + + + F+NP I + PP ++ + + V +K P
Sbjct: 16 LPFLHFSPPLKWVVSSVPNVREQVPFSNP---IRTTAKAPPVSVPSTSASATVTSKESSP 186
Query: 61 EVAIATDSFTQFKHLLL 77
T S Q LLL
Sbjct: 187-----TSSTIQVAVLLL 222
>AW981325 similar to GP|10177256|dbj zinc-binding protein-like {Arabidopsis
thaliana}, partial (13%)
Length = 457
Score = 27.7 bits (60), Expect = 3.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 151 DGSKPTAIIGDVADELNLDLVVISMEAIHTKHIDA 185
D S+ I+ DV DELNLD S ++ +T +D+
Sbjct: 246 DKSRRWRIVDDVEDELNLDANASSSDSENT*QVDS 350
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,342,571
Number of Sequences: 36976
Number of extensions: 96046
Number of successful extensions: 767
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of query: 201
length of database: 9,014,727
effective HSP length: 91
effective length of query: 110
effective length of database: 5,649,911
effective search space: 621490210
effective search space used: 621490210
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC136504.5