TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136472.17 - phase: 0 
         (124 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85674 similar to PIR|E96500|E96500 probable histidine decarbox...   218  1e-57
BQ143976                                                               36  0.004
TC92066 similar to GP|12231296|gb|AAG49032.1 ripening regulated ...    28  0.70
TC91208 homologue to SP|Q9BBP1|NU6C_LOTJA NADH-plastoquinone oxi...    26  3.5
TC88080 similar to GP|6562375|emb|CAB62555.1 potassium channel {...    25  7.7
TC78729 similar to GP|22137252|gb|AAM91471.1 AT3g06760/F3E22_10 ...    25  7.7

>TC85674 similar to PIR|E96500|E96500 probable histidine decarboxylase
            [imported] - Arabidopsis thaliana, partial (85%)
          Length = 1839

 Score =  218 bits (554), Expect(2) = 1e-57
 Identities = 104/106 (98%), Positives = 105/106 (98%)
 Frame = +3

Query: 8    FEKEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV 67
            F+KEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV
Sbjct: 1233 FQKEVQKCLRNAHYFKDRLIEAGIGAMLNELSSTVVFERPHDEEFIRKWQLACKGNIAHV 1412

Query: 68   VVMPNVTIEKLDDFLNELVQKRATWFEYGTFQPYCIASDVGENSCL 113
            VVMPNVTIEKLDDFLNELVQKRATWFE GTFQPYCIASDVGENSCL
Sbjct: 1413 VVMPNVTIEKLDDFLNELVQKRATWFEDGTFQPYCIASDVGENSCL 1550



 Score = 20.8 bits (42), Expect(2) = 1e-57
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 1    MAMLPYSF 8
            MAMLPYSF
Sbjct: 1177 MAMLPYSF 1200


>BQ143976 
          Length = 446

 Score = 35.8 bits (81), Expect = 0.004
 Identities = 13/28 (46%), Positives = 21/28 (74%)
 Frame = +1

Query: 85  LVQKRATWFEYGTFQPYCIASDVGENSC 112
           L++K++ W++   FQP CIA+DVG  +C
Sbjct: 91  LLEKQSIWYKDEQFQPPCIANDVGSRNC 174


>TC92066 similar to GP|12231296|gb|AAG49032.1 ripening regulated protein
           DDTFR18 {Lycopersicon esculentum}, partial (34%)
          Length = 668

 Score = 28.5 bits (62), Expect = 0.70
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 98  FQPYCIASDVGENSCLAYVLIISNW 122
           FQPYCI  DVG +S L +    S+W
Sbjct: 251 FQPYCILYDVGHHSILCW----SSW 313


>TC91208 homologue to SP|Q9BBP1|NU6C_LOTJA NADH-plastoquinone oxidoreductase
           chain 6  chloroplast (EC 1.6.5.3). {Lotus japonicus},
           complete
          Length = 1081

 Score = 26.2 bits (56), Expect = 3.5
 Identities = 13/23 (56%), Positives = 15/23 (64%)
 Frame = +3

Query: 97  TFQPYCIASDVGENSCLAYVLII 119
           T+QPY     VG  SCL Y+LII
Sbjct: 186 TYQPYFFCFFVGTGSCL-YILII 251


>TC88080 similar to GP|6562375|emb|CAB62555.1 potassium channel {Daucus
           carota}, partial (68%)
          Length = 1922

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 104 ASDVGENSCLAYVLIISNWS 123
           A  +G+N CL Y++ I  WS
Sbjct: 394 ARSMGKNKCLTYLIAIFLWS 335


>TC78729 similar to GP|22137252|gb|AAM91471.1 AT3g06760/F3E22_10
           {Arabidopsis thaliana}, partial (52%)
          Length = 1040

 Score = 25.0 bits (53), Expect = 7.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 9   EKEVQKCLRNAHYFKDRLIEAGIGAMLNELSST 41
           ++ V+K + N+  F+  L EAG+ ++L   SST
Sbjct: 401 KRRVRKGVTNSTLFRKELREAGLHSLLGGSSST 499


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.324    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,410,148
Number of Sequences: 36976
Number of extensions: 53263
Number of successful extensions: 270
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of query: 124
length of database: 9,014,727
effective HSP length: 84
effective length of query: 40
effective length of database: 5,908,743
effective search space: 236349720
effective search space used: 236349720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)