BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136451.5 + phase: 0
(161 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC87968 homologue to PIR|A96785|A96785 Putative ubiquitin-conjug... 342 5e-95
TC90476 similar to PIR|A96785|A96785 Putative ubiquitin-conjugat... 308 5e-85
TC76310 homologue to GP|441457|emb|CAA51821.1| ubiquitin conjuga... 87 3e-18
BG646316 homologue to GP|441457|emb| ubiquitin conjugating enzym... 87 4e-18
TC76365 homologue to GP|456568|gb|AAA64427.1|| ubiquitin conjuga... 83 4e-17
TC76372 homologue to SP|P35135|UBC4_LYCES Ubiquitin-conjugating ... 83 4e-17
TC87811 homologue to GP|5762457|gb|AAD51109.1| ubiquitin-conjuga... 82 1e-16
TC76358 homologue to GP|11762186|gb|AAG40371.1 AT4g27960 {Arabid... 80 3e-16
TC87151 homologue to GP|19347846|gb|AAL86003.1 putative E2 ubiq... 78 2e-15
BE997626 similar to GP|20065779|gb ubiquitin-conjugating enzyme ... 76 5e-15
TC77775 SP|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2-17 ... 75 1e-14
TC76312 GP|8118527|gb|AAF73016.1| ubiquitin conjugating protein ... 75 1e-14
TC79879 similar to GP|22530867|gb|AAM96887.1 ubiquitin-conjugati... 74 3e-14
TC85637 homologue to GP|19347846|gb|AAL86003.1 putative E2 ubiq... 74 3e-14
TC78283 similar to PIR|S57619|S57619 ubiquitin conjugating enzym... 71 2e-13
TC79032 weakly similar to GP|11340591|emb|CAC17051. unnamed prot... 71 2e-13
AW560359 homologue to PIR|D96541|D96 hypothetical protein F17J6.... 70 4e-13
TC78533 homologue to GP|21536556|gb|AAM60888.1 E2 ubiquitin-con... 69 6e-13
TC79685 GP|15146240|gb|AAK83603.1 At1g78870/F9K20_8 {Arabidopsis... 69 8e-13
TC76318 homologue to GP|20975734|emb|CAD29823. putative ubiquiti... 69 1e-12
>TC87968 homologue to PIR|A96785|A96785 Putative ubiquitin-conjugating
enzyme [imported] - Arabidopsis thaliana, complete
Length = 823
Score = 342 bits (876), Expect = 5e-95
Identities = 161/161 (100%), Positives = 161/161 (100%)
Frame = +1
Query: 1 MTSSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVTDNLQRWVIEVGGAPGTLYSN 60
MTSSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVTDNLQRWVIEVGGAPGTLYSN
Sbjct: 76 MTSSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVTDNLQRWVIEVGGAPGTLYSN 255
Query: 61 ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI
Sbjct: 256 ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 435
Query: 121 LSMLSSSTAKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161
LSMLSSSTAKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 436 LSMLSSSTAKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 558
>TC90476 similar to PIR|A96785|A96785 Putative ubiquitin-conjugating enzyme
[imported] - Arabidopsis thaliana, complete
Length = 764
Score = 308 bits (790), Expect = 5e-85
Identities = 142/161 (88%), Positives = 154/161 (95%)
Frame = +2
Query: 1 MTSSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVTDNLQRWVIEVGGAPGTLYSN 60
MTSSS +SRK LSKIA NRLQKELVEWQ+NPP GF ++V+DNLQRWVIEV GAPGTLY+N
Sbjct: 83 MTSSSTSSRKNLSKIASNRLQKELVEWQINPPAGFNYKVSDNLQRWVIEVIGAPGTLYAN 262
Query: 61 ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
ETY+LQVDFPE+YPMEAPQVIF++PAP+HPHIYSNGHICLDILYDSWSPAMTVSS+CISI
Sbjct: 263 ETYKLQVDFPEHYPMEAPQVIFMNPAPMHPHIYSNGHICLDILYDSWSPAMTVSSVCISI 442
Query: 121 LSMLSSSTAKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 161
LSMLSSS AKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV
Sbjct: 443 LSMLSSSPAKQRPEDNDRYVKNCRNGRSPKETRWWFHDDKV 565
>TC76310 homologue to GP|441457|emb|CAA51821.1| ubiquitin conjugating enzyme
E2 {Lycopersicon esculentum}, complete
Length = 900
Score = 87.0 bits (214), Expect = 3e-18
Identities = 44/119 (36%), Positives = 70/119 (57%), Gaps = 1/119 (0%)
Frame = +3
Query: 8 SRKTLSKIACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQ 66
S+ + +A R+ KEL + Q +PPT V +++ W + G P + Y+ + +
Sbjct: 99 SKGNSNSMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVT 278
Query: 67 VDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
+ FP +YP + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 279 IHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 452
>BG646316 homologue to GP|441457|emb| ubiquitin conjugating enzyme E2
{Lycopersicon esculentum}, complete
Length = 616
Score = 86.7 bits (213), Expect = 4e-18
Identities = 43/120 (35%), Positives = 69/120 (56%), Gaps = 1/120 (0%)
Frame = +3
Query: 8 SRKTLSKIACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQ 66
S+ + +A R+ KEL + Q +PPT V +++ W + G P + Y+ + +
Sbjct: 21 SKGNSNSMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVT 200
Query: 67 VDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSS 126
+ FP +YP + P+V F HP+I SNG ICLDIL + WSPA+T+S +C+ + +L S
Sbjct: 201 IHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVCVWLFQVLLS 377
>TC76365 homologue to GP|456568|gb|AAA64427.1|| ubiquitin conjugating enzyme
{Pisum sativum}, complete
Length = 856
Score = 83.2 bits (204), Expect = 4e-17
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +2
Query: 15 IACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENY 73
+A R+ KEL + Q +PPT V +++ W + G + Y+ + + + FP +Y
Sbjct: 101 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDY 280
Query: 74 PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
P + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 281 PFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 433
>TC76372 homologue to SP|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme
E2-17 kDa (EC 6.3.2.19) (Ubiquitin- protein ligase),
complete
Length = 844
Score = 83.2 bits (204), Expect = 4e-17
Identities = 42/112 (37%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Frame = +1
Query: 15 IACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENY 73
+A R+ KEL + Q +PPT V +++ W + G + Y+ + + + FP +Y
Sbjct: 70 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYTGGVFLVSIHFPPDY 249
Query: 74 PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
P + P+V F HP+I SNG ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 250 PFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 402
>TC87811 homologue to GP|5762457|gb|AAD51109.1| ubiquitin-conjugating enzyme
UBC2 {Mesembryanthemum crystallinum}, complete
Length = 1298
Score = 81.6 bits (200), Expect = 1e-16
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%)
Frame = +1
Query: 15 IACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENY 73
+A R+ KEL + Q +PPT V +++ W + G + Y+ + + + FP +Y
Sbjct: 220 MASKRIVKELKDLQRDPPTSCSAGPVGEDMFHWQATIIGPNDSPYAGGVFLVTIHFPPDY 399
Query: 74 PMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLS 125
P + P+V F HP+I SNG+ICLDIL + WSPA+T+S + +SI S+L+
Sbjct: 400 PFKPPKVAF-RTKVFHPNINSNGNICLDILKEQWSPALTISKVLLSICSLLT 552
>TC76358 homologue to GP|11762186|gb|AAG40371.1 AT4g27960 {Arabidopsis
thaliana}, partial (57%)
Length = 677
Score = 80.5 bits (197), Expect = 3e-16
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Frame = +3
Query: 8 SRKTLSKIACNRLQKELVEWQVNPPTGFKHR-VTDNLQRWVIEVGGAPGTLYSNETYQLQ 66
S+ + +A R+ KEL + Q +PPT V +++ W + G P + Y+ + +
Sbjct: 63 SKGNSNSMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVT 242
Query: 67 VDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSS 126
+ FP +YP + P+V F HP+I SNG ICLDIL + WSPA+T+S +L +L+S
Sbjct: 243 IHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTIS----KVLPLLNS 407
Query: 127 ST 128
T
Sbjct: 408 LT 413
>TC87151 homologue to GP|19347846|gb|AAL86003.1 putative E2
ubiquitin-conjugating enzyme UBC7 {Arabidopsis
thaliana}, partial (88%)
Length = 887
Score = 77.8 bits (190), Expect = 2e-15
Identities = 45/122 (36%), Positives = 63/122 (50%), Gaps = 15/122 (12%)
Frame = +2
Query: 20 LQKELVEWQVNPPTGFKHRVTD--NLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPMEA 77
LQK+L + NP GF + D N+ W + V G P TLY + + FP NYP
Sbjct: 155 LQKQLKDLCKNPVDGFSAGLVDENNIFEWSVTVIGPPDTLYEGGFFNAIMSFPSNYPNSP 334
Query: 78 PQVIFLHPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSICISILSML 124
P V F HP++Y++G +C+ IL+ + W+P TV SI +SI+SML
Sbjct: 335 PTVKFTSEI-WHPNVYTDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISML 511
Query: 125 SS 126
SS
Sbjct: 512 SS 517
>BE997626 similar to GP|20065779|gb ubiquitin-conjugating enzyme COP10
{Arabidopsis thaliana}, partial (64%)
Length = 398
Score = 76.3 bits (186), Expect = 5e-15
Identities = 39/123 (31%), Positives = 68/123 (54%), Gaps = 1/123 (0%)
Frame = +2
Query: 2 TSSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVT-DNLQRWVIEVGGAPGTLYSN 60
+S+S+ + T + R+Q+E+VE +PP DNL W+ + G PGT Y
Sbjct: 32 SSTSSWAPTTSVSASGKRIQREMVELNNDPPPHCSAGPKGDNLYHWIATIIGTPGTPYQG 211
Query: 61 ETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISI 120
+ L + FP +YP + PQV+F H ++ +G + + IL D WSPA+T++ + +++
Sbjct: 212 GIFFLDIIFPTDYPFKPPQVVF-RTRIYHCNVEPDGRVSMGILKDGWSPALTITKVLLAV 388
Query: 121 LSM 123
S+
Sbjct: 389 RSL 397
>TC77775 SP|P35130|UBC2_MEDSA Ubiquitin-conjugating enzyme E2-17 kDa (EC
6.3.2.19) (Ubiquitin-protein ligase), complete
Length = 894
Score = 75.1 bits (183), Expect = 1e-14
Identities = 47/143 (32%), Positives = 71/143 (48%), Gaps = 10/143 (6%)
Frame = +1
Query: 12 LSKIACNRLQKELVEWQVNPPTGFKHRVTDN-LQRWVIEVGGAPGTLYSNETYQLQVDFP 70
+S A RL ++ Q +PP G DN + W + G T + T++L + F
Sbjct: 157 MSTPARKRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFS 336
Query: 71 ENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML------ 124
E+YP + P V F+ HP+IY++G ICLDIL + WSP V++I SI S+L
Sbjct: 337 EDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPN 513
Query: 125 ---SSSTAKQRPEDNDRYVKNCR 144
+S A+ E+ Y + R
Sbjct: 514 SPANSEAARMFSENKREYNRRVR 582
>TC76312 GP|8118527|gb|AAF73016.1| ubiquitin conjugating protein {Avicennia
marina}, complete
Length = 1369
Score = 75.1 bits (183), Expect = 1e-14
Identities = 47/143 (32%), Positives = 71/143 (48%), Gaps = 10/143 (6%)
Frame = +2
Query: 12 LSKIACNRLQKELVEWQVNPPTGFKHRVTDN-LQRWVIEVGGAPGTLYSNETYQLQVDFP 70
+S A RL ++ Q +PP G DN + W + G T + T++L + F
Sbjct: 746 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFT 925
Query: 71 ENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML------ 124
E+YP + P V F+ HP+IY++G ICLDIL + WSP V++I SI S+L
Sbjct: 926 EDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPN 1102
Query: 125 ---SSSTAKQRPEDNDRYVKNCR 144
+S A+ E+ Y + R
Sbjct: 1103SPANSEAARMFSENKREYNRRVR 1171
>TC79879 similar to GP|22530867|gb|AAM96887.1 ubiquitin-conjugating enzyme
{Arabidopsis thaliana}, partial (88%)
Length = 852
Score = 73.9 bits (180), Expect = 3e-14
Identities = 40/107 (37%), Positives = 61/107 (56%), Gaps = 1/107 (0%)
Frame = +2
Query: 19 RLQKELVEWQVNPPTGFK-HRVTDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPMEA 77
RLQ EL+ ++ +G DN+ W + G+ T++ Y+L + FP +YP +A
Sbjct: 221 RLQSELMSLMMSGESGISAFPEEDNIFLWKGTITGSKDTVFEGTDYKLSLSFPNDYPFKA 400
Query: 78 PQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML 124
P+V F HP++ +G+ICLDIL D WS A V +I +SI S+L
Sbjct: 401 PKVKF-ETTCFHPNVDLHGNICLDILQDKWSSAYDVRTILLSIQSLL 538
>TC85637 homologue to GP|19347846|gb|AAL86003.1 putative E2
ubiquitin-conjugating enzyme UBC7 {Arabidopsis
thaliana}, partial (89%)
Length = 1023
Score = 73.6 bits (179), Expect = 3e-14
Identities = 42/121 (34%), Positives = 61/121 (49%), Gaps = 15/121 (12%)
Frame = +1
Query: 20 LQKELVEWQVNPPTGFKHRVTD--NLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPMEA 77
LQK+L + +P GF + D N+ W + + G P TLY + + FP NYP
Sbjct: 109 LQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSP 288
Query: 78 PQVIFLHPAPLHPHIYSNGHICLDILY-------------DSWSPAMTVSSICISILSML 124
P V F HP++Y +G +C+ IL+ + W+P TV SI +SI+SML
Sbjct: 289 PSVKFTSEI-WHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISML 465
Query: 125 S 125
S
Sbjct: 466 S 468
>TC78283 similar to PIR|S57619|S57619 ubiquitin conjugating enzyme - tomato,
partial (98%)
Length = 998
Score = 71.2 bits (173), Expect = 2e-13
Identities = 43/112 (38%), Positives = 65/112 (57%), Gaps = 4/112 (3%)
Frame = +2
Query: 19 RLQKELVEWQVNPPTGFKHRV---TDNLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPM 75
R+QKEL + + + G RV +DNL + + G GT Y +Q+ + P+ YP
Sbjct: 122 RVQKELADCRKDAE-GSGIRVALKSDNLVNLIGTIPGPTGTPYDGGVFQIDITLPDGYPF 298
Query: 76 EAPQVIFLHPAPLHPHIYS-NGHICLDILYDSWSPAMTVSSICISILSMLSS 126
E P++ F HP+I S NG ICLDIL D WSPA+T+ + +S+ ++LS+
Sbjct: 299 EPPKMRFSTKV-WHPNISSQNGAICLDILKDQWSPALTLKTALLSVQALLSA 451
>TC79032 weakly similar to GP|11340591|emb|CAC17051. unnamed protein product
{Zea mays}, partial (78%)
Length = 956
Score = 70.9 bits (172), Expect = 2e-13
Identities = 42/114 (36%), Positives = 60/114 (51%), Gaps = 8/114 (7%)
Frame = +2
Query: 19 RLQKELVEWQVNP--------PTGFKHRVTDNLQRWVIEVGGAPGTLYSNETYQLQVDFP 70
RLQKEL+ ++ P G +N+ W+ + G GT Y +Y+L + FP
Sbjct: 269 RLQKELMALMMSGGDLGVSAFPDG------ENIFTWIGTIEGGKGTPYEGLSYKLSLHFP 430
Query: 71 ENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML 124
NYP + PQV F HP++ G+ICLDIL D WS A ++ +SI S+L
Sbjct: 431 PNYPFKPPQVKF-ETTCFHPNVDQFGNICLDILQDKWSSAYDCRTMLLSIQSLL 589
>AW560359 homologue to PIR|D96541|D96 hypothetical protein F17J6.3 [imported]
- Arabidopsis thaliana, partial (62%)
Length = 678
Score = 70.1 bits (170), Expect = 4e-13
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = -1
Query: 41 DNLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICL 100
DN+ W + G+ T++ Y+L + FP YP +AP+V F HP++ +G+ICL
Sbjct: 663 DNILCWKGTIAGSKDTVFEGTEYRLSLSFPNEYPFKAPKVKF-DTTCFHPNVDLHGNICL 487
Query: 101 DILYDSWSPAMTVSSICISILSML 124
DIL D WS A V +I +SI S+L
Sbjct: 486 DILQDKWSSAYDVRTILLSIQSLL 415
>TC78533 homologue to GP|21536556|gb|AAM60888.1 E2 ubiquitin-conjugating
enzyme putative {Arabidopsis thaliana}, complete
Length = 870
Score = 69.3 bits (168), Expect = 6e-13
Identities = 32/85 (37%), Positives = 52/85 (60%), Gaps = 1/85 (1%)
Frame = +3
Query: 42 NLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPMEAPQVIFLHPAPLHPHI-YSNGHICL 100
N+ +W + G T + +QL PE+YP++ PQV FL HP++ + G ICL
Sbjct: 144 NIFKWTALIKGPSETPFDGGVFQLAFSVPEHYPLQPPQVRFLTKI-FHPNVHFKTGEICL 320
Query: 101 DILYDSWSPAMTVSSICISILSMLS 125
DIL +WSPA T+ S+C +I+++++
Sbjct: 321 DILKTAWSPAWTLQSVCRAIIALMA 395
>TC79685 GP|15146240|gb|AAK83603.1 At1g78870/F9K20_8 {Arabidopsis thaliana},
complete
Length = 842
Score = 68.9 bits (167), Expect = 8e-13
Identities = 34/86 (39%), Positives = 54/86 (62%)
Frame = +1
Query: 41 DNLQRWVIEVGGAPGTLYSNETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICL 100
DN++ + + + G + Y ++L++ PE YPM AP+V FL HP+I G ICL
Sbjct: 184 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICL 360
Query: 101 DILYDSWSPAMTVSSICISILSMLSS 126
DIL D WSPA+ + ++ +SI ++LS+
Sbjct: 361 DILKDKWSPALQIRTVLLSIQALLSA 438
>TC76318 homologue to GP|20975734|emb|CAD29823. putative
ubiquitin-conjugating enzyme {Populus euramericana},
partial (98%)
Length = 979
Score = 68.6 bits (166), Expect = 1e-12
Identities = 43/130 (33%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Frame = +3
Query: 3 SSSAASRKTLSKIACNRLQKELVEWQVNPPTGFKHRVTD------NLQRWVIEVGGAPGT 56
SS + T+S IA RL +E W+ N P GF + NL W + G GT
Sbjct: 87 SSEIRNTTTMSGIARGRLTEERKSWRKNHPHGFVAKPETAADGSVNLMIWHCTIPGKAGT 266
Query: 57 LYSNETYQLQVDFPENYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYD--SWSPAMTVS 114
+ + L + F E+YP + P+ F HP++Y +G +CL IL + W PA+TV
Sbjct: 267 DWEGGYFPLTLHFSEDYPSKPPKCKFPQGF-FHPNVYPSGTVCLSILNEDSGWRPAITVK 443
Query: 115 SICISILSML 124
I + I +L
Sbjct: 444 QILVGIQDLL 473
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.132 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,623,764
Number of Sequences: 36976
Number of extensions: 105494
Number of successful extensions: 676
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of query: 161
length of database: 9,014,727
effective HSP length: 88
effective length of query: 73
effective length of database: 5,760,839
effective search space: 420541247
effective search space used: 420541247
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC136451.5