TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136287.1 + phase: 1 /partial
         (436 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC85756 similar to PIR|T00696|T00696 probable methylenetetrahydr...   892  0.0
TC89251 similar to PIR|H84680|H84680 hypothetical protein At2g28...    30  1.8
TC77323 similar to SP|O48670|RERA_ARATH RER1A protein (AtRER1A)....    28  6.9
TC90172 similar to PIR|E86421|E86421 hypothetical protein AAG106...    28  6.9

>TC85756 similar to PIR|T00696|T00696 probable methylenetetrahydrofolate
            reductase [imported] - Arabidopsis thaliana, partial
            (97%)
          Length = 2238

 Score =  892 bits (2305), Expect = 0.0
 Identities = 433/433 (100%), Positives = 433/433 (100%)
 Frame = +2

Query: 1    AHPDVIGADGLATAEGYQSDLAYLKSKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITC 60
            AHPDVIGADGLATAEGYQSDLAYLKSKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITC
Sbjct: 575  AHPDVIGADGLATAEGYQSDLAYLKSKVDAGADLIVTQLFYDTDIFLKFVNDCRQIGITC 754

Query: 61   PIVPGIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKIM 120
            PIVPGIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKIM
Sbjct: 755  PIVPGIMPINNYKGFIRMTGFCKTKIPAEIMAALEPIKDNEEAVKAYGIHLGTEMCKKIM 934

Query: 121  AHGIKTVHLYTLNMEKSALAILTSLGLIEESKISRSLPWRRPTNVFRVKEDVRPIFWANR 180
            AHGIKTVHLYTLNMEKSALAILTSLGLIEESKISRSLPWRRPTNVFRVKEDVRPIFWANR
Sbjct: 935  AHGIKTVHLYTLNMEKSALAILTSLGLIEESKISRSLPWRRPTNVFRVKEDVRPIFWANR 1114

Query: 181  PKSYISRTIGWEQYPHGRWSDSGNPSYGALTDYQFMRPRAKDKKLIEEWAVPLKSIEDIY 240
            PKSYISRTIGWEQYPHGRWSDSGNPSYGALTDYQFMRPRAKDKKLIEEWAVPLKSIEDIY
Sbjct: 1115 PKSYISRTIGWEQYPHGRWSDSGNPSYGALTDYQFMRPRAKDKKLIEEWAVPLKSIEDIY 1294

Query: 241  ERFRLFCLGKLRTNPWSELDGLQPETKIINEHLEKINTKGFLTINSQPAVNGEKSDSPIV 300
            ERFRLFCLGKLRTNPWSELDGLQPETKIINEHLEKINTKGFLTINSQPAVNGEKSDSPIV
Sbjct: 1295 ERFRLFCLGKLRTNPWSELDGLQPETKIINEHLEKINTKGFLTINSQPAVNGEKSDSPIV 1474

Query: 301  GWGGPGGYIYQKAYLEFFCSKEKLDALIEKSKDRPFLTYMAVNKEGIWKSNVGQTDVNAV 360
            GWGGPGGYIYQKAYLEFFCSKEKLDALIEKSKDRPFLTYMAVNKEGIWKSNVGQTDVNAV
Sbjct: 1475 GWGGPGGYIYQKAYLEFFCSKEKLDALIEKSKDRPFLTYMAVNKEGIWKSNVGQTDVNAV 1654

Query: 361  TWGVFPAKEIIQPTIVDPVSFNVWKDEAFEIWSRGWASLYPEADASRKLVEEVGSSYFLV 420
            TWGVFPAKEIIQPTIVDPVSFNVWKDEAFEIWSRGWASLYPEADASRKLVEEVGSSYFLV
Sbjct: 1655 TWGVFPAKEIIQPTIVDPVSFNVWKDEAFEIWSRGWASLYPEADASRKLVEEVGSSYFLV 1834

Query: 421  SLVDNDYANGDLF 433
            SLVDNDYANGDLF
Sbjct: 1835 SLVDNDYANGDLF 1873


>TC89251 similar to PIR|H84680|H84680 hypothetical protein At2g28110
           [imported] - Arabidopsis thaliana, partial (30%)
          Length = 923

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 47  LKFVNDCRQIGITCPIVPGIMPINNYKGF 75
           +K  N+ + I ITC I+ G+ P+N+YK +
Sbjct: 541 VKNQNNTKYIPITCQILIGVKPLNSYKTY 455


>TC77323 similar to SP|O48670|RERA_ARATH RER1A protein (AtRER1A). [Mouse-ear
           cress] {Arabidopsis thaliana}, partial (85%)
          Length = 1086

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 15/42 (35%), Positives = 22/42 (51%), Gaps = 1/42 (2%)
 Frame = -3

Query: 265 ETKIINEHLEKINTKGFLTINS-QPAVNGEKSDSPIVGWGGP 305
           E K+I   ++K   K +  +NS    +NG  S  P+VG  GP
Sbjct: 526 EKKVIKNAIKKAFVKEYQNLNSGSRRINGLNSSEPLVGNKGP 401


>TC90172 similar to PIR|E86421|E86421 hypothetical protein AAG10615.1
           [imported] - Arabidopsis thaliana, partial (75%)
          Length = 1540

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 18/63 (28%), Positives = 28/63 (43%)
 Frame = -1

Query: 156 SLPWRRPTNVFRVKEDVRPIFWANRPKSYISRTIGWEQYPHGRWSDSGNPSYGALTDYQF 215
           S+P+ RP       E + PI + + P     R +   QYPH    +  N S  + ++YQ 
Sbjct: 523 SIPYHRPEKNHHSNETLFPILYDHLPT*VELRPVSKLQYPHS--MEHHNRSTFSDSEYQL 350

Query: 216 MRP 218
             P
Sbjct: 349 KTP 341


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,282,776
Number of Sequences: 36976
Number of extensions: 198765
Number of successful extensions: 781
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of query: 436
length of database: 9,014,727
effective HSP length: 99
effective length of query: 337
effective length of database: 5,354,103
effective search space: 1804332711
effective search space used: 1804332711
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)