TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC136286.9 - phase: 0 
         (222 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC87827 similar to GP|8809596|dbj|BAA97147.1 contains similarity...   411  e-116
TC87828 similar to GP|8809596|dbj|BAA97147.1 contains similarity...   315  9e-87
TC85225 similar to SP|P11894|RK9_PEA 50S ribosomal protein L9  c...    45  3e-05
TC77317 similar to GP|20260496|gb|AAM13146.1 trehalose-6-phospha...    32  0.15
BI308141 similar to GP|5903055|gb|A May be a pseudogene of F6D8....    27  6.3

>TC87827 similar to GP|8809596|dbj|BAA97147.1 contains similarity to
           ribosomal protein L9~gene_id:MNB8.13 {Arabidopsis
           thaliana}, partial (50%)
          Length = 1139

 Score =  411 bits (1057), Expect = e-116
 Identities = 213/224 (95%), Positives = 216/224 (96%), Gaps = 2/224 (0%)
 Frame = +2

Query: 1   MGYLQFGRYSVRQIVRFKDVVN--EGVVVNPLMYASQGLRYNRKLQVILTTNIDKLGKAG 58
           MGYLQFGR+ VRQI+RFKD VN  + VVVN LMYASQGLRYNRKLQVILTTNIDKLGKAG
Sbjct: 227 MGYLQFGRHGVRQIIRFKDAVNVNDSVVVNRLMYASQGLRYNRKLQVILTTNIDKLGKAG 406

Query: 59  ETVKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLM 118
           ETVKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLM
Sbjct: 407 ETVKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLM 586

Query: 119 KEYERAALILDKAKLVLRRLIDVKKAKARESKDEPLELQIPVSKNALVAEVARQLCVNIT 178
           KEYERA LILDKAKLVLRRLIDVKKAKARESKDEPLELQIPVSK ALVAEVARQLCVNIT
Sbjct: 587 KEYERAGLILDKAKLVLRRLIDVKKAKARESKDEPLELQIPVSKKALVAEVARQLCVNIT 766

Query: 179 AENLHLPTPLSTIGEYEVPLRLPRSIPLPEGKLNWALKVKIRSK 222
           AENLHLPTPLSTIGEYEVPLRLPRSIPLPEGKLNWALKVKIRSK
Sbjct: 767 AENLHLPTPLSTIGEYEVPLRLPRSIPLPEGKLNWALKVKIRSK 898


>TC87828 similar to GP|8809596|dbj|BAA97147.1 contains similarity to
           ribosomal protein L9~gene_id:MNB8.13 {Arabidopsis
           thaliana}, partial (25%)
          Length = 663

 Score =  315 bits (807), Expect = 9e-87
 Identities = 162/163 (99%), Positives = 162/163 (99%)
 Frame = +3

Query: 1   MGYLQFGRYSVRQIVRFKDVVNEGVVVNPLMYASQGLRYNRKLQVILTTNIDKLGKAGET 60
           MGYLQFGRYSVRQIVRFKDVVNEGVVVNPLMYASQGLRYNRKLQVILTTNIDKLGKAGET
Sbjct: 174 MGYLQFGRYSVRQIVRFKDVVNEGVVVNPLMYASQGLRYNRKLQVILTTNIDKLGKAGET 353

Query: 61  VKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLMKE 120
           VKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLMKE
Sbjct: 354 VKVAPGFFRNHLMPKLLAVPNIDKFAYLLTEQRKIYQPTEEVKQEDVVVVTESKEDLMKE 533

Query: 121 YERAALILDKAKLVLRRLIDVKKAKARESKDEPLELQIPVSKN 163
           YERAALILDKAKLVLRRLIDVKKAKARESKDEPLELQIP SKN
Sbjct: 534 YERAALILDKAKLVLRRLIDVKKAKARESKDEPLELQIPXSKN 662


>TC85225 similar to SP|P11894|RK9_PEA 50S ribosomal protein L9  chloroplast
           precursor (CL13). [Garden pea] {Pisum sativum}, partial
           (96%)
          Length = 1234

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 45/182 (24%), Positives = 83/182 (44%), Gaps = 15/182 (8%)
 Frame = -2

Query: 30  LMYASQGLRYNRKLQVILTTNIDKLGKAGETVKVAPGFFRNHLMPKLLA-VPNIDKFAYL 88
           L++A +  +  RK  +IL  +I  +GK GE + V  GFFRN+L P   A +   D    L
Sbjct: 651 LIFAQKKAKKTRK--IILKEDILNVGKKGELLDVKAGFFRNYLFPSGKAQIATADLLKEL 478

Query: 89  LTEQRKIYQPTEEVKQE--DVVVVTESKEDLMKEYERAALILDKAKLVLRRLIDVKKAKA 146
             E+ +I    + VK+E   +  + ES      + +          +  + L+D+ KA+ 
Sbjct: 477 KIEEERIEAEKQRVKEEALQLAQILESVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQL 298

Query: 147 RESKDEPLELQIP--------VSKNALVAEVARQLCVNITAE----NLHLPTPLSTIGEY 194
           +   D+ + +++P        +++  L  EV  ++ VN+ A        +P    TIG +
Sbjct: 297 QREVDKRI-VELPEIRETGEYIAELKLHPEVTAKVSVNVLAN*ALICFKMPYARCTIGSH 121

Query: 195 EV 196
            +
Sbjct: 120 TI 115


>TC77317 similar to GP|20260496|gb|AAM13146.1 trehalose-6-phosphate
           phosphatase {Arabidopsis thaliana}, partial (75%)
          Length = 1732

 Score = 32.3 bits (72), Expect = 0.15
 Identities = 40/149 (26%), Positives = 62/149 (40%), Gaps = 18/149 (12%)
 Frame = +3

Query: 16  RFKDVVNEGVVVNPLMYA-SQGLRYNRKLQVILTTN----IDKLGKAGETVKVAPGFFRN 70
           R ++ V+E V +  L YA S G+     L+  ++ N    I    K G+ V        N
Sbjct: 615 RSREKVHEFVGLTDLHYAGSHGMDIIGPLRQSISDNHPNCIRSTDKKGKEV--------N 770

Query: 71  HLMPKLLAVPNIDKFAYLLTEQRKIYQPTE-------------EVKQEDVVVVTESKEDL 117
              P    +P ID+   LLTE  K  +  +              V++E   +V +   D+
Sbjct: 771 LFQPAAEFLPMIDEVRKLLTESTKDIKGAKIENNKFCVSVHYRNVEEESWDLVAQRVFDI 950

Query: 118 MKEYERAALILDKAKLVLRRLIDVKKAKA 146
           MK+Y    L   +  L +R +ID  K KA
Sbjct: 951 MKDYPHLRLTHGRKVLEVRPVIDWDKGKA 1037


>BI308141 similar to GP|5903055|gb|A May be a pseudogene of F6D8.29.
           {Arabidopsis thaliana}, partial (7%)
          Length = 833

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 184 LPTPLSTIGEYEVPLRLPRSIPLPEGKLNWALKVKI 219
           +PTP+S + ++   + +P  IP P    NW + + I
Sbjct: 552 MPTPISFLFKWATTMTMPMPIPFP---FNWVVTMPI 650


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.318    0.137    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,219,958
Number of Sequences: 36976
Number of extensions: 61565
Number of successful extensions: 307
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of query: 222
length of database: 9,014,727
effective HSP length: 92
effective length of query: 130
effective length of database: 5,612,935
effective search space: 729681550
effective search space used: 729681550
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)