BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136286.5 + phase: 1 /partial
(107 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF520204 weakly similar to PIR|F86278|F86 hypothetical protein A... 132 3e-32
TC90049 similar to PIR|F86278|F86278 hypothetical protein AAF439... 89 3e-19
TC89867 similar to PIR|C96737|C96737 unknown protein F3I17.9 [im... 35 0.006
BG587443 weakly similar to PIR|T06405|T064 resistance complex pr... 28 0.55
TC80472 similar to GP|7939545|dbj|BAA95748.1 gene_id:K5K13.8~unk... 28 0.55
BQ151304 similar to GP|4028979|emb| glutamate permease {syntheti... 28 0.72
CB065377 similar to GP|12329965|em kinesin {Leishmania major}, p... 27 0.94
AL369948 similar to GP|14587221|db contains ESTs AU108104(C12321... 27 1.2
TC89451 weakly similar to GP|21536959|gb|AAM61300.1 unknown {Ara... 27 1.6
TC82552 similar to GP|9758479|dbj|BAB09008.1 peptide methionine ... 27 1.6
TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical prot... 27 1.6
BE204258 similar to GP|15778431|gb prunasin hydrolase isoform PH... 26 2.1
TC76881 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan tr... 26 2.1
TC90823 weakly similar to GP|9280311|dbj|BAB01690.1 gene_id:K13E... 26 2.1
TC76723 beta glucosidase-like protein [Medicago truncatula] 26 2.1
TC78835 similar to PIR|T47934|T47934 hypothetical protein F2A19.... 26 2.1
CA921811 similar to GP|14194125|gb At1g29900/F1N18_6 {Arabidopsi... 26 2.1
TC86469 similar to GP|21464654|emb|CAD30328. acid phosphatase {L... 26 2.7
TC80364 weakly similar to SP|P50165|TRNH_DATST Tropinone reducta... 26 2.7
TC80369 similar to PIR|A86386|A86386 probable DNA-binding protei... 26 2.7
>BF520204 weakly similar to PIR|F86278|F86 hypothetical protein AAF43941.1
[imported] - Arabidopsis thaliana, partial (53%)
Length = 650
Score = 132 bits (331), Expect = 3e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Frame = +1
Query: 1 GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 60
GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW
Sbjct: 247 GELPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDW 426
Query: 61 NRKQV 65
NRKQV
Sbjct: 427 NRKQV 441
>TC90049 similar to PIR|F86278|F86278 hypothetical protein AAF43941.1
[imported] - Arabidopsis thaliana, partial (69%)
Length = 869
Score = 89.0 bits (219), Expect = 3e-19
Identities = 39/63 (61%), Positives = 49/63 (76%)
Frame = +3
Query: 3 LPARVHVSRSVYKGKAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWNR 62
LP RV+V S+YKGKA L ++P PKF + DSG +KIS++G +LLQF PS G RQYDWNR
Sbjct: 42 LPPRVYVGHSIYKGKAALTITPTPPKFVTLDSGAYKISRDGCLLLQFAPSVGPRQYDWNR 221
Query: 63 KQV 65
KQ+
Sbjct: 222 KQL 230
>TC89867 similar to PIR|C96737|C96737 unknown protein F3I17.9 [imported] -
Arabidopsis thaliana, partial (53%)
Length = 673
Score = 34.7 bits (78), Expect = 0.006
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 33 DSGTFKISKEGLMLLQFVPSAGFRQYDWNRKQVSYC 68
DSG + + G +++ F+P+ G R+YDW K+ + C
Sbjct: 5 DSGALWVDRHGSIMMSFMPAIGERKYDW-EKETNIC 109
>BG587443 weakly similar to PIR|T06405|T064 resistance complex protein I2C-3
- tomato (fragment), partial (13%)
Length = 720
Score = 28.1 bits (61), Expect = 0.55
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -2
Query: 37 FKISKEGLMLLQFVPSAGFRQY------DWNRKQVSYCSFIIWCW 75
F I + + LQF+ A F +WN +SYC FII+ +
Sbjct: 713 FAIENQISIFLQFIEWADFHPLRA*SPENWNTTCLSYCDFIIYIY 579
>TC80472 similar to GP|7939545|dbj|BAA95748.1 gene_id:K5K13.8~unknown
protein {Arabidopsis thaliana}, partial (32%)
Length = 900
Score = 28.1 bits (61), Expect = 0.55
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Frame = -3
Query: 67 YCSFIIWCWQ---HIRYLYSLEF 86
+C F+ WCWQ H+ Y +S F
Sbjct: 595 WCRFVWWCWQCVSHLLYYFSYLF 527
>BQ151304 similar to GP|4028979|emb| glutamate permease {synthetic construct},
partial (3%)
Length = 1163
Score = 27.7 bits (60), Expect = 0.72
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = -3
Query: 56 RQYDWNRKQVSYCSFIIWCWQHIRYLYSLEFRFYRCCQALH--IISKRSFFWF 106
R Y W V +C+ + + LY FRF+RCC ++ R FF F
Sbjct: 1077 RGYGW----VDWCTAVSSVHRASPSLYGQFFRFFRCCSLFRAFLLFLRFFFRF 931
>CB065377 similar to GP|12329965|em kinesin {Leishmania major}, partial (1%)
Length = 683
Score = 27.3 bits (59), Expect = 0.94
Identities = 19/45 (42%), Positives = 24/45 (53%)
Frame = +2
Query: 17 KAVLVVSPVLPKFTSSDSGTFKISKEGLMLLQFVPSAGFRQYDWN 61
KAV V V+ K S S +KIS L + F PS FR+ +WN
Sbjct: 266 KAVKNVEGVVGKSFLSLSQDYKISS*ELKSVDFTPS--FREKEWN 394
>AL369948 similar to GP|14587221|db contains ESTs AU108104(C12321)
C26435(C12321)~similar to Arabidopsis thaliana
chromosome 3 F24P17., partial (5%)
Length = 510
Score = 26.9 bits (58), Expect = 1.2
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 55 FRQYDWNRKQVSYCSFIIWCWQHIRYLYSLEFRFYRCCQAL 95
F+QY W + + YCS +Q + Y +F F +C L
Sbjct: 233 FQQYPWPLRPLLYCSPSKSKFQSLIMSYGSKFYFQQCISPL 111
>TC89451 weakly similar to GP|21536959|gb|AAM61300.1 unknown {Arabidopsis
thaliana}, partial (80%)
Length = 1609
Score = 26.6 bits (57), Expect = 1.6
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Frame = +2
Query: 59 DWN--RKQVSYCSFIIWCW 75
DW R++ C+F+ WCW
Sbjct: 698 DWTFLRERKDQCAFLFWCW 754
>TC82552 similar to GP|9758479|dbj|BAB09008.1 peptide methionine sulfoxide
reductase {Arabidopsis thaliana}, partial (98%)
Length = 811
Score = 26.6 bits (57), Expect = 1.6
Identities = 8/26 (30%), Positives = 18/26 (68%)
Frame = +1
Query: 80 YLYSLEFRFYRCCQALHIISKRSFFW 105
+ + L+ FY C Q+LH++++++ W
Sbjct: 16 FSHHLKLVFYCCQQSLHVLAEQALVW 93
>TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical protein
{Plasmodium falciparum 3D7}, partial (8%)
Length = 1064
Score = 26.6 bits (57), Expect = 1.6
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = -2
Query: 71 IIWCWQHIRYLY 82
IIWCW+H+ +L+
Sbjct: 37 IIWCWRHLGFLH 2
>BE204258 similar to GP|15778431|gb prunasin hydrolase isoform PH A precursor
{Prunus serotina}, partial (24%)
Length = 664
Score = 26.2 bits (56), Expect = 2.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 89 YRCCQALHIISKRSFFW 105
YRC Q LHI++K S W
Sbjct: 181 YRCIQILHILAKDSSNW 231
>TC76881 homologue to GP|3043422|emb|CAA06217.1 endoxyloglucan transferase
{Cicer arietinum}, partial (94%)
Length = 1442
Score = 26.2 bits (56), Expect = 2.1
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -3
Query: 71 IIWCWQHIR-YLYSLEFRFYRCCQALHIISKRSFFW 105
+ WCW+HIR + +++ + L++ +F W
Sbjct: 1146 VTWCWKHIR*QIIQIKYHIISYDENLYVTVSFAFRW 1039
>TC90823 weakly similar to GP|9280311|dbj|BAB01690.1
gene_id:K13E13.3~unknown protein {Arabidopsis thaliana},
partial (91%)
Length = 1024
Score = 26.2 bits (56), Expect = 2.1
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = +2
Query: 70 FIIWCWQHIRYLYSLEFRFYRCCQALHI 97
F W W+ Y YSL+ RF++ + H+
Sbjct: 335 FYCWKWKEA-YHYSLQLRFWKVAKGRHV 415
>TC76723 beta glucosidase-like protein [Medicago truncatula]
Length = 2331
Score = 26.2 bits (56), Expect = 2.1
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +2
Query: 89 YRCCQALHIISKRSFFW 105
YRC Q LHI++K S W
Sbjct: 479 YRCIQILHILAKDSSNW 529
>TC78835 similar to PIR|T47934|T47934 hypothetical protein F2A19.20 -
Arabidopsis thaliana, partial (29%)
Length = 1301
Score = 26.2 bits (56), Expect = 2.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 75 WQHIRYLYSLEFRFYRCCQALHI 97
+ IR+++S RFYRC HI
Sbjct: 381 YNSIRFMFSPSKRFYRCSWMFHI 313
Score = 24.6 bits (52), Expect = 6.1
Identities = 14/32 (43%), Positives = 19/32 (58%), Gaps = 3/32 (9%)
Frame = -3
Query: 79 RYLYSLEFRF---YRCCQALHIISKRSFFWFI 107
RYLY LEFR Y Q+ +I+K F ++I
Sbjct: 918 RYLYFLEFRIYL*YGVFQSSSLINKTLFCYWI 823
>CA921811 similar to GP|14194125|gb At1g29900/F1N18_6 {Arabidopsis thaliana},
partial (3%)
Length = 798
Score = 26.2 bits (56), Expect = 2.1
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 64 QVSYCSFIIWCWQHIRYLYSLEFRFYR--CCQALH 96
Q SYC WC + R LE +FY+ C LH
Sbjct: 772 QGSYCDNS*WCSGNCRSNKELEVQFYQNDCSSGLH 668
>TC86469 similar to GP|21464654|emb|CAD30328. acid phosphatase {Lupinus
luteus}, partial (92%)
Length = 1737
Score = 25.8 bits (55), Expect = 2.7
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 14/47 (29%)
Frame = +1
Query: 4 PARVHVSRSVYKGKAVLV--VSPVLP------------KFTSSDSGT 36
P +VH+++ Y GKAV++ V+P P KF SS GT
Sbjct: 214 PQQVHITQGDYDGKAVIISWVTPDEPGSSHVQFGTSENKFQSSAQGT 354
>TC80364 weakly similar to SP|P50165|TRNH_DATST Tropinone reductase homolog
(EC 1.1.1.-) (P29X). [Jimsonweed Common thornapple]
{Datura stramonium}, partial (66%)
Length = 811
Score = 25.8 bits (55), Expect = 2.7
Identities = 13/45 (28%), Positives = 20/45 (43%), Gaps = 13/45 (28%)
Frame = +1
Query: 65 VSYC---SFIIWCWQHIRYLYSLEFRFYRC----------CQALH 96
VS C S IW W+H + + F+ Y C C+++H
Sbjct: 451 VSTCTSSSKTIWIWKHSVHFFRCRFKSYSCFICLCSHQRSCESIH 585
>TC80369 similar to PIR|A86386|A86386 probable DNA-binding protein RAV2
[imported] - Arabidopsis thaliana, partial (30%)
Length = 821
Score = 25.8 bits (55), Expect = 2.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 88 FYRCCQALHIISKRSFFWF 106
F+ C LH++S SFF+F
Sbjct: 776 FFHCTVLLHLLSPSSFFFF 720
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.331 0.142 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,286,848
Number of Sequences: 36976
Number of extensions: 64763
Number of successful extensions: 695
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of query: 107
length of database: 9,014,727
effective HSP length: 83
effective length of query: 24
effective length of database: 5,945,719
effective search space: 142697256
effective search space used: 142697256
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 50 (23.9 bits)
Medicago: description of AC136286.5