BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136142.6 + phase: 0
(147 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC84478 similar to GP|18481426|gb|AAL73441.1 telomere repeat bin... 272 3e-74
TC89379 similar to GP|18481426|gb|AAL73441.1 telomere repeat bin... 160 2e-40
TC84632 similar to GP|17065320|gb|AAL32814.1 Unknown protein {Ar... 124 1e-29
BF003720 weakly similar to GP|20146249|db putative telomere repe... 122 5e-29
AJ389017 similar to GP|17065320|gb| Unknown protein {Arabidopsis... 115 8e-27
TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsi... 90 4e-19
TC89413 weakly similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Ara... 86 7e-18
BG453504 76 4e-15
TC79799 similar to GP|15010654|gb|AAK73986.1 At1g72650/F28P22_16... 39 8e-04
BG644406 homologue to PIR|T07398|T07 myb-related transcription f... 35 0.008
TC86588 similar to GP|5139814|dbj|BAA81736.1 GmMYB29B2 {Glycine ... 35 0.008
BI266228 homologue to GP|10178078|dbj MYB96 transcription factor... 35 0.014
TC84620 similar to PIR|JQ0956|JQ0956 myb-related protein 306 - g... 35 0.014
BQ149085 similar to GP|9802570|gb|A F22O13.30 {Arabidopsis thali... 34 0.019
BF635572 similar to GP|7673084|gb| An2 protein {Petunia x hybrid... 34 0.019
TC78980 myb-related transcription factor [Medicago truncatula] 34 0.024
BF633067 similar to GP|23664357|gb telomere binding protein TBP1... 33 0.032
BF647428 homologue to PIR|T51621|T51 myb-like protein [imported]... 33 0.032
TC78268 weakly similar to PIR|B85064|B85064 MYB-like protein [im... 33 0.032
CA917886 similar to GP|22093812|db putative zinc-finger helicase... 33 0.032
>TC84478 similar to GP|18481426|gb|AAL73441.1 telomere repeat binding factor
2 {Arabidopsis thaliana}, partial (29%)
Length = 706
Score = 272 bits (696), Expect = 3e-74
Identities = 134/134 (100%), Positives = 134/134 (100%)
Frame = +3
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 60
MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA
Sbjct: 171 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 350
Query: 61 IWGSRQKAKLALKNSPPAPKTDNNQLALGKVVQREDFLDIKPLTISGGTFQSPKPLTICS 120
IWGSRQKAKLALKNSPPAPKTDNNQLALGKVVQREDFLDIKPLTISGGTFQSPKPLTICS
Sbjct: 351 IWGSRQKAKLALKNSPPAPKTDNNQLALGKVVQREDFLDIKPLTISGGTFQSPKPLTICS 530
Query: 121 GTLQSPNSKEQVSR 134
GTLQSPNSKEQVSR
Sbjct: 531 GTLQSPNSKEQVSR 572
>TC89379 similar to GP|18481426|gb|AAL73441.1 telomere repeat binding factor
2 {Arabidopsis thaliana}, partial (24%)
Length = 855
Score = 160 bits (404), Expect = 2e-40
Identities = 81/110 (73%), Positives = 89/110 (80%), Gaps = 2/110 (1%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 60
MGAPKQKWTAEEEAALKAGVVK+GAGKWRTIL DP+FS+ILR RSNVDLKDKWRNINVTA
Sbjct: 427 MGAPKQKWTAEEEAALKAGVVKYGAGKWRTILTDPDFSTILRMRSNVDLKDKWRNINVTA 606
Query: 61 IWGSRQKAKLALKNSPPAPKTDNNQ--LALGKVVQREDFLDIKPLTISGG 108
IWGSRQKAKLALK S P PK +NN + V + KPL++SGG
Sbjct: 607 IWGSRQKAKLALKKSLPPPKNENNHHPTSTAIVQYNPEVAAPKPLSVSGG 756
>TC84632 similar to GP|17065320|gb|AAL32814.1 Unknown protein {Arabidopsis
thaliana}, partial (25%)
Length = 641
Score = 124 bits (311), Expect = 1e-29
Identities = 67/137 (48%), Positives = 92/137 (66%), Gaps = 5/137 (3%)
Frame = +3
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 60
MGAPKQKWT+EEEAALKAGV KHG GKWRTI+ DPEF+ +L RSNVDLKDKWRN++V
Sbjct: 177 MGAPKQKWTSEEEAALKAGVAKHGVGKWRTIIKDPEFNRVLFIRSNVDLKDKWRNLSVMG 356
Query: 61 IW-GSRQKAKLALKN-SPPAPKTDNNQLALGKVV---QREDFLDIKPLTISGGTFQSPKP 115
SR+K+K A+K + P PK D+N +A+ V ++ +D +PL +S P P
Sbjct: 357 NGSSSREKSKGAIKRLNHPVPKQDDNSMAITAVTGPSDDDEIVDAQPLQVSRDMPHIPGP 536
Query: 116 LTICSGTLQSPNSKEQV 132
+ + L++ +S ++
Sbjct: 537 KRLDNLILEAISSLNEL 587
>BF003720 weakly similar to GP|20146249|db putative telomere repeat binding
factor {Oryza sativa (japonica cultivar-group)}, partial
(44%)
Length = 642
Score = 122 bits (306), Expect = 5e-29
Identities = 63/118 (53%), Positives = 82/118 (69%), Gaps = 3/118 (2%)
Frame = +2
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 60
MG PKQKW+ EEE+ALKAGV+KHG GKWRTIL DPEF+ +L RSNVDLKDKWRN++V A
Sbjct: 74 MGVPKQKWSEEEESALKAGVIKHGVGKWRTILKDPEFNHVLYLRSNVDLKDKWRNLSVMA 253
Query: 61 I-WGSRQKAKLALKN-SPPAPKTDNNQLALGKVVQRED-FLDIKPLTISGGTFQSPKP 115
W SR+K K A+K AP+ ++N +A+ +D +D++PL +S Q P
Sbjct: 254 SGWASREKPKGAMKRVHYQAPRHEDNSMAVTPFFLSDDEIVDVQPLQVSRDMLQISGP 427
>AJ389017 similar to GP|17065320|gb| Unknown protein {Arabidopsis thaliana},
partial (25%)
Length = 549
Score = 115 bits (287), Expect = 8e-27
Identities = 56/90 (62%), Positives = 70/90 (77%), Gaps = 2/90 (2%)
Frame = +2
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 60
MG PKQKW+ EEE+ALKAGV+KHG GKWRTIL DPEF+ +L RSNVDLKDKWRN++V A
Sbjct: 68 MGVPKQKWSEEEESALKAGVIKHGVGKWRTILKDPEFNHVLYLRSNVDLKDKWRNLSVMA 247
Query: 61 I-WGSRQKAKLALKN-SPPAPKTDNNQLAL 88
W SR+K K A+K AP+ ++N +A+
Sbjct: 248 SGWASREKPKGAMKRVHYQAPRHEDNSMAV 337
>TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsis
thaliana}, partial (34%)
Length = 946
Score = 89.7 bits (221), Expect = 4e-19
Identities = 41/58 (70%), Positives = 47/58 (80%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINV 58
MG KQKWTAEEE AL GV K+GAGKW+ IL DP+FS L +RSN+DLKDKWRN+NV
Sbjct: 289 MGNQKQKWTAEEEEALHQGVQKYGAGKWKHILKDPQFSQKLASRSNIDLKDKWRNLNV 462
>TC89413 weakly similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsis
thaliana}, partial (47%)
Length = 749
Score = 85.5 bits (210), Expect = 7e-18
Identities = 38/61 (62%), Positives = 46/61 (75%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTA 60
MG K KWT EEE AL AG+ HG GKW+ IL+DP+F +L +RSN+DLKDKWRN+NV
Sbjct: 58 MGNQKLKWTNEEEDALIAGIETHGPGKWKAILLDPQFGPLLTSRSNIDLKDKWRNMNVNN 237
Query: 61 I 61
I
Sbjct: 238 I 240
>BG453504
Length = 596
Score = 76.3 bits (186), Expect = 4e-15
Identities = 35/50 (70%), Positives = 41/50 (82%)
Frame = +3
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLK 50
MGAPKQ WT+EEEAA KAGVVKHG GKW T+L +PEF+ +L SNV+LK
Sbjct: 126 MGAPKQNWTSEEEAASKAGVVKHGVGKWCTVLKNPEFNRVLYICSNVNLK 275
>TC79799 similar to GP|15010654|gb|AAK73986.1 At1g72650/F28P22_16
{Arabidopsis thaliana}, partial (17%)
Length = 1219
Score = 38.9 bits (89), Expect = 8e-04
Identities = 23/49 (46%), Positives = 28/49 (56%)
Frame = +2
Query: 8 WTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNI 56
WT E L GV + G G+W I FSS R++VDLKDKWRN+
Sbjct: 695 WTLVEVLKLVDGVSRCGPGRWSEIKR-LSFSSYSH-RTSVDLKDKWRNL 835
>BG644406 homologue to PIR|T07398|T07 myb-related transcription factor THM6 -
tomato, partial (42%)
Length = 762
Score = 35.4 bits (80), Expect = 0.008
Identities = 19/54 (35%), Positives = 27/54 (49%)
Frame = +1
Query: 2 GAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
G K WT EE+ L + V +HG G WRT+ P + + R + L +W N
Sbjct: 175 GVKKGPWTPEEDIMLVSFVQEHGPGNWRTV---PTHTGLRRCSKSCRL--RWTN 321
>TC86588 similar to GP|5139814|dbj|BAA81736.1 GmMYB29B2 {Glycine max},
partial (85%)
Length = 1389
Score = 35.4 bits (80), Expect = 0.008
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
MG + W+ EE+ L + + KHG G WR + P+ + +LR + L +W N
Sbjct: 134 MGLKRGPWSLEEDEILTSYIQKHGHGNWRAL---PKLAGLLRCGKSCRL--RWIN 283
>BI266228 homologue to GP|10178078|dbj MYB96 transcription factor-like
protein {Arabidopsis thaliana}, partial (24%)
Length = 384
Score = 34.7 bits (78), Expect = 0.014
Identities = 17/55 (30%), Positives = 29/55 (51%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
+G K WT EE+ L + + +HG G WR++ P + ++R + L +W N
Sbjct: 82 LGIKKGPWTPEEDIILVSYIQQHGPGNWRSV---PTNTGLMRCSKSCRL--RWTN 231
>TC84620 similar to PIR|JQ0956|JQ0956 myb-related protein 306 - garden
snapdragon, partial (44%)
Length = 593
Score = 34.7 bits (78), Expect = 0.014
Identities = 17/55 (30%), Positives = 29/55 (51%)
Frame = +2
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
+G K WT EE+ L + + +HG G WR++ P + ++R + L +W N
Sbjct: 146 LGIKKGPWTPEEDIILVSYIQQHGPGNWRSV---PTNTGLMRCSKSCRL--RWTN 295
>BQ149085 similar to GP|9802570|gb|A F22O13.30 {Arabidopsis thaliana},
partial (16%)
Length = 464
Score = 34.3 bits (77), Expect = 0.019
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = +1
Query: 1 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTI 31
+G K WT EE+ L + + +HG G WRT+
Sbjct: 160 VGIKKGPWTPEEDIILVSYIQEHGPGNWRTV 252
>BF635572 similar to GP|7673084|gb| An2 protein {Petunia x hybrida},
partial (40%)
Length = 367
Score = 34.3 bits (77), Expect = 0.019
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +2
Query: 5 KQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
K WT EE+ LKA + K+G GKW + P+ + + R R + L +W N
Sbjct: 2 KGAWTYEEDNLLKACIHKYGEGKWHLV---PKRTGLNRCRKSCRL--RWLN 139
>TC78980 myb-related transcription factor [Medicago truncatula]
Length = 1526
Score = 33.9 bits (76), Expect = 0.024
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 5 KQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLK---DKWRN 55
+Q+W AEE+A L+A V ++G +W + S + T N D K ++W+N
Sbjct: 201 RQRWRAEEDALLRAYVKQYGPREWNLV------SQRMNTPLNRDAKSCLERWKN 344
>BF633067 similar to GP|23664357|gb telomere binding protein TBP1 {Nicotiana
glutinosa}, partial (14%)
Length = 456
Score = 33.5 bits (75), Expect = 0.032
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +3
Query: 5 KQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRNINVTAIWGS 64
++ ++ E AL V K G G+WR + + R+ VDLKDKW+ + TA
Sbjct: 216 RRPFSVLEVEALVQAVEKLGTGRWRDVKQ--RAFDHAKHRTYVDLKDKWKTLVHTARISP 389
Query: 65 RQKAKLALKNSPPAPKTDNNQ 85
+Q + P P+ + Q
Sbjct: 390 QQ------RRGEPVPQEPSRQ 434
>BF647428 homologue to PIR|T51621|T51 myb-like protein [imported] -
Arabidopsis thaliana, partial (44%)
Length = 689
Score = 33.5 bits (75), Expect = 0.032
Identities = 17/54 (31%), Positives = 27/54 (49%)
Frame = +2
Query: 2 GAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
G K WT EE+ L + + +HG G W+ + P + +LR + L +W N
Sbjct: 122 GVKKGPWTPEEDIILVSYIQEHGPGNWKAV---PTNTGLLRCSKSCRL--RWTN 268
>TC78268 weakly similar to PIR|B85064|B85064 MYB-like protein [imported] -
Arabidopsis thaliana, partial (35%)
Length = 888
Score = 33.5 bits (75), Expect = 0.032
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = +1
Query: 2 GAPKQKWTAEEEAALKAGVVKHGAGKWRTILMDPEFSSILRTRSNVDLKDKWRN 55
G K WTAEE+ L A V ++G WR + P+F+ + R + L +W N
Sbjct: 115 GMRKGTWTAEEDRKLIAYVTRYGCWNWRQL---PKFAGLSRCGKSCRL--RWLN 261
>CA917886 similar to GP|22093812|db putative zinc-finger helicase {Oryza
sativa (japonica cultivar-group)}, partial (1%)
Length = 569
Score = 33.5 bits (75), Expect = 0.032
Identities = 33/108 (30%), Positives = 47/108 (42%), Gaps = 4/108 (3%)
Frame = +3
Query: 8 WTAEEEAALKAGVVKHGAGKWRTILMDP--EFSSILRTRSNVDLKDKWRNINVTAIWGSR 65
W+ EE L GV +HG G W +L DP FS + R DL ++W
Sbjct: 105 WSEEELDFLWIGVRRHGRGNWDAMLRDPRLRFSPL---RVPWDLAERW----------EE 245
Query: 66 QKAKLALKNSPPAPKTDNNQLALGKVVQRED--FLDIKPLTISGGTFQ 111
++ KL LK+S P N + A+ + + FLD K T T +
Sbjct: 246 EQLKL-LKDSVPHFMHPNTERAVAAAALQGNTCFLDPKSGTWRQNTME 386
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.314 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,426,416
Number of Sequences: 36976
Number of extensions: 53048
Number of successful extensions: 285
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of query: 147
length of database: 9,014,727
effective HSP length: 87
effective length of query: 60
effective length of database: 5,797,815
effective search space: 347868900
effective search space used: 347868900
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)
Medicago: description of AC136142.6