BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136140.1 - phase: 0
(115 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG586273 weakly similar to PIR|F86470|F8 probable retroelement p... 55 4e-09
BI262917 weakly similar to GP|19920130|g Putative retroelement {... 40 1e-04
TC88276 similar to GP|8777412|dbj|BAA97002.1 indole-3-glycerol p... 28 0.68
TC77754 similar to GP|19911585|dbj|BAB86896. syringolide-induced... 27 1.2
TC82732 similar to GP|21166034|gb|AAM43651.1 HYPOTHETICAL 64.7 K... 27 1.5
TC92754 similar to GP|8777356|dbj|BAA96946.1 gene_id:MJB24.4~unk... 26 2.0
CB065276 similar to SP|Q37546|NU1M_ NADH-ubiquinone oxidoreducta... 26 2.6
CB891069 similar to PIR|E86428|E8 probable ABC transporter [impo... 26 2.6
AW736134 similar to PIR|A96541|A96 probable hexokinase [imported... 25 3.4
TC82454 weakly similar to GP|3551243|dbj|BAA32820.1 Water-Solubl... 25 5.8
TC79085 weakly similar to PIR|T01081|T01081 hypothetical protein... 25 5.8
TC78922 similar to GP|4107276|emb|CAA67130.1 acetyl-CoA syntheta... 24 7.5
TC79146 similar to GP|9757884|dbj|BAB08471.1 RuvB DNA helicase-l... 24 7.5
BG584596 similar to GP|23476263|gb fructokinase {Lycopersicon es... 24 7.5
AW560483 24 7.5
BG587290 24 9.8
TC78145 similar to GP|15294240|gb|AAK95297.1 AT3g18860/MCB22_3 {... 24 9.8
TC93691 24 9.8
TC90365 weakly similar to GP|19571134|dbj|BAB86558. hypothetical... 24 9.8
TC84476 similar to GP|17065216|gb|AAL32762.1 3-phosphoinositide-... 24 9.8
>BG586273 weakly similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 705
Score = 55.1 bits (131), Expect = 4e-09
Identities = 26/85 (30%), Positives = 47/85 (54%)
Frame = -2
Query: 7 VSSLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEK 66
+ + ++K P+E + +KP + R+FG + Y +P R K L+ S K + +G S
Sbjct: 683 IPTRVLKDQAPFEVLNQRKPSLTYMRVFGCLCYVLVPGELRNK-LEARSRKAMFIGYSTT 507
Query: 67 SKAYRFFDRIIKKIVVSEDVAFDEQ 91
K Y+ +D ++++VS DV F E+
Sbjct: 506 QKGYKCYDPEARRVLVSRDVKFIEE 432
>BI262917 weakly similar to GP|19920130|g Putative retroelement {Oryza
sativa} [Oryza sativa (japonica cultivar-group)],
partial (8%)
Length = 426
Score = 40.0 bits (92), Expect = 1e-04
Identities = 21/66 (31%), Positives = 30/66 (44%)
Frame = +1
Query: 9 SLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKSK 68
S ++ TP E W K +FG Y + SQ + LD S KC+ LG ++ K
Sbjct: 229 STVIDLKTPMEMWKGKPVDYSSLHVFGCPVYV-MYNSQERTKLDPKSRKCIFLGYADNVK 405
Query: 69 AYRFFD 74
Y +D
Sbjct: 406 GYXLWD 423
>TC88276 similar to GP|8777412|dbj|BAA97002.1 indole-3-glycerol phosphate
synthase {Arabidopsis thaliana}, partial (85%)
Length = 1542
Score = 27.7 bits (60), Expect = 0.68
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -1
Query: 55 SNKCVLLGVSEKSKAYRFFDRIIKKIVVSEDVAFDEQGMLSLILKEIQIRIYRGIGG 111
+ +C+ G++ ++K + FF+ ++V D+ D ++LIL+ R Y I G
Sbjct: 657 NRRCISKGLANRNKGFSFFELCDFVVLVPHDLFQDVTRCIALILQPELKRSYIMIRG 487
>TC77754 similar to GP|19911585|dbj|BAB86896. syringolide-induced protein
13-1-1 {Glycine max}, partial (85%)
Length = 1577
Score = 26.9 bits (58), Expect = 1.2
Identities = 22/63 (34%), Positives = 29/63 (45%), Gaps = 1/63 (1%)
Frame = -3
Query: 38 AYAHIPFSQRKKTLDDNSNKCVLLGVSEKSKAYRFFDRIIKKIVVSED-VAFDEQGMLSL 96
A++HIPFS N K +S S + F D KIVV VA D G L++
Sbjct: 1062 AFSHIPFSPSTIVSSKNETKPNSTNLSLISSLF-FADETNLKIVVKHAFVALDPIGSLTI 886
Query: 97 ILK 99
+ K
Sbjct: 885 LTK 877
>TC82732 similar to GP|21166034|gb|AAM43651.1 HYPOTHETICAL 64.7 KDA PROTEIN
{Dictyostelium discoideum}, partial (1%)
Length = 571
Score = 26.6 bits (57), Expect = 1.5
Identities = 23/60 (38%), Positives = 30/60 (49%), Gaps = 6/60 (10%)
Frame = +2
Query: 56 NKCVLLGVSEKSKA----YRFFDRIIKKIVVS--EDVAFDEQGMLSLILKEIQIRIYRGI 109
N CV L SEK+K YR F RI K + VS + + D + I + IQ RI R +
Sbjct: 92 NLCVSL*FSEKNKKKKLNYRIFRRIFKDVEVSILQPIEHDAHVIKRTITETIQ-RISRPV 268
>TC92754 similar to GP|8777356|dbj|BAA96946.1 gene_id:MJB24.4~unknown
protein {Arabidopsis thaliana}, partial (93%)
Length = 659
Score = 26.2 bits (56), Expect = 2.0
Identities = 11/35 (31%), Positives = 21/35 (59%)
Frame = -1
Query: 5 LWVSSLIVKSSTPYEAWSVKKPYVMPFRIFGFIAY 39
LW++S+++ SS S++K + FR+F + Y
Sbjct: 266 LWITSIVLASSPKMTNHSIEK**IFHFRVFQ*VNY 162
>CB065276 similar to SP|Q37546|NU1M_ NADH-ubiquinone oxidoreductase chain 1
(EC 1.6.5.3). [Common earthworm] {Lumbricus terrestris},
partial (4%)
Length = 631
Score = 25.8 bits (55), Expect = 2.6
Identities = 13/35 (37%), Positives = 14/35 (39%)
Frame = +1
Query: 5 LWVSSLIVKSSTPYEAWSVKKPYVMPFRIFGFIAY 39
LW S S T W V K Y + R F I Y
Sbjct: 82 LWSGSTCCTSGTQELCWEVSKVYAIQERSFSSIRY 186
>CB891069 similar to PIR|E86428|E8 probable ABC transporter [imported] -
Arabidopsis thaliana, partial (17%)
Length = 813
Score = 25.8 bits (55), Expect = 2.6
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Frame = +1
Query: 28 VMPFRIFGFIAYAHIPFSQRK-KTLDDNSNKCVLLGVSEKS------KAYRFFDRII 77
+MP IF ++AY + + R+ K +D + V E +AY+ +DRI+
Sbjct: 190 IMPLLIFFYVAYIYYQSTSREVKRMDSITRSPVYAHFGESMNGVSSIRAYKAYDRIL 360
>AW736134 similar to PIR|A96541|A96 probable hexokinase [imported] -
Arabidopsis thaliana, partial (31%)
Length = 497
Score = 25.4 bits (54), Expect = 3.4
Identities = 14/66 (21%), Positives = 31/66 (46%)
Frame = -3
Query: 5 LWVSSLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLLGVS 64
+W+ + + + +W +++P V PF I + ++ TLD++ N + G+S
Sbjct: 258 IWIRAFSI*FNVILCSW*MRRPKVPPFHIDNHAS*C----CKKTLTLDNSINSLQVAGIS 91
Query: 65 EKSKAY 70
+ Y
Sbjct: 90 TSTNPY 73
>TC82454 weakly similar to GP|3551243|dbj|BAA32820.1 Water-Soluble
Chlorophyll Protein {Brassica oleracea}, partial (17%)
Length = 940
Score = 24.6 bits (52), Expect = 5.8
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = +2
Query: 29 MPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLL 61
+PF +F Y +PF+Q + + D + +L+
Sbjct: 62 LPFLLFALTTYFPLPFTQGVEQVKDKNGNPILV 160
>TC79085 weakly similar to PIR|T01081|T01081 hypothetical protein
T10P11.3.2 - Arabidopsis thaliana, partial (19%)
Length = 1660
Score = 24.6 bits (52), Expect = 5.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 34 FGFIAYAHIPFSQRKKTLDDNSNKCVLLGVSEKS 67
+ F + HIP+ KT + S KC+ + V KS
Sbjct: 31 YPFDPFLHIPYLMLNKTHYNTSIKCLSIFVEYKS 132
>TC78922 similar to GP|4107276|emb|CAA67130.1 acetyl-CoA synthetase {Solanum
tuberosum}, partial (84%)
Length = 1788
Score = 24.3 bits (51), Expect = 7.5
Identities = 11/32 (34%), Positives = 17/32 (52%)
Frame = -2
Query: 6 WVSSLIVKSSTPYEAWSVKKPYVMPFRIFGFI 37
W SS V+++ + PY+ PFR F F+
Sbjct: 422 WTSSWTVRNN-------ILPPYISPFRPFSFL 348
>TC79146 similar to GP|9757884|dbj|BAB08471.1 RuvB DNA helicase-like protein
{Arabidopsis thaliana}, partial (47%)
Length = 792
Score = 24.3 bits (51), Expect = 7.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 6 WVSSLIVKSSTPYEAWSVKKPYVMP 30
WVS+L + +AWS K P P
Sbjct: 199 WVSTLP*SHAPSLKAWSAKSPLAKP 273
>BG584596 similar to GP|23476263|gb fructokinase {Lycopersicon esculentum},
partial (35%)
Length = 758
Score = 24.3 bits (51), Expect = 7.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 27 YVMPFRIFGFIAYAHIPFSQRKKTLDDNSNKCVLL 61
YV+ F + Y+H+PFS L N+N V +
Sbjct: 102 YVVEFMSPFILKYSHLPFSVH*FLLSSNNNIVVYI 206
>AW560483
Length = 143
Score = 24.3 bits (51), Expect = 7.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 13 KSSTPYEAWSVKKPYV 28
K+S PY+ WS+K P +
Sbjct: 33 KTSFPYKFWSIKVPII 80
>BG587290
Length = 667
Score = 23.9 bits (50), Expect = 9.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -2
Query: 18 YEAWSVKKPYVMPFRIFGFIAY 39
YE W VK PY+ F F + Y
Sbjct: 180 YEKWRVKSPYLKSFINFFWNIY 115
>TC78145 similar to GP|15294240|gb|AAK95297.1 AT3g18860/MCB22_3 {Arabidopsis
thaliana}, partial (93%)
Length = 2633
Score = 23.9 bits (50), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 73 FDRIIKKIVVSEDVAFDEQGMLSLILKEIQI 103
FD I+KKI + +QG L L E+ +
Sbjct: 1578 FDGILKKIAEFNNALLSDQGNQKLSLTELDV 1670
>TC93691
Length = 482
Score = 23.9 bits (50), Expect = 9.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 91 QGMLSLILKEIQIRIYRGIGGHQV 114
+ +L LILK IR+Y+ IG HQV
Sbjct: 181 KSVLGLILK---IRLYQEIGFHQV 243
>TC90365 weakly similar to GP|19571134|dbj|BAB86558. hypothetical
protein~similar to Arabidopsis thaliana chromosome4
At4g38730, partial (44%)
Length = 1086
Score = 23.9 bits (50), Expect = 9.8
Identities = 11/37 (29%), Positives = 20/37 (53%)
Frame = -2
Query: 7 VSSLIVKSSTPYEAWSVKKPYVMPFRIFGFIAYAHIP 43
+S L+++ PY + +K +++ F GFI IP
Sbjct: 566 LSHLLLEMILPYNCY*IKGWHILLFLFPGFIVALEIP 456
>TC84476 similar to GP|17065216|gb|AAL32762.1 3-phosphoinositide-dependent
protein kinase-1 putative {Arabidopsis thaliana},
partial (28%)
Length = 685
Score = 23.9 bits (50), Expect = 9.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -1
Query: 30 PFRIFGFIAYAHIPFSQRKKT 50
P+R FGF H SQR++T
Sbjct: 127 PYRCFGFRRIVHNFHSQRRRT 65
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.142 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,406,905
Number of Sequences: 36976
Number of extensions: 38606
Number of successful extensions: 247
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of query: 115
length of database: 9,014,727
effective HSP length: 91
effective length of query: 24
effective length of database: 5,649,911
effective search space: 135597864
effective search space used: 135597864
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)
Medicago: description of AC136140.1