BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135959.8 + phase: 0 /pseudo/partial
(1454 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana... 310 2e-84
TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alterna... 187 2e-47
BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - ... 94 5e-19
TC77595 weakly similar to PIR|T18350|T18350 probable pol polypro... 89 2e-17
BG586326 similar to PIR|G84493|G8 probable retroelement pol poly... 86 8e-17
BG644741 85 2e-16
BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin... 79 1e-14
BG580885 67 5e-11
AL367832 weakly similar to GP|14091845|gb Putative retroelement ... 62 2e-09
BG587150 similar to GP|13592175|gb ppg3 {Leishmania major}, part... 61 3e-09
AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis... 58 2e-08
BG586308 weakly similar to PIR|F84528|F8 probable retroelement p... 54 3e-07
BG582085 51 3e-06
CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product ... 50 5e-06
BG644740 similar to PIR|A84460|A84 probable retroelement pol pol... 46 1e-04
BE999414 40 0.009
BE997611 40 0.009
AL366605 37 0.073
TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci... 36 0.095
AL387995 32 1.8
>BG587101 similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana}, partial
(10%)
Length = 624
Score = 310 bits (795), Expect = 2e-84
Identities = 141/197 (71%), Positives = 165/197 (83%)
Frame = +2
Query: 1230 DLKHYYWDEPYLFRRGSDGIFRRCIPESEVSSILTHCHSSSYGGHASTQKTSFKILHSGF 1289
D++ Y WDEP+L+++ +D I+ RC+ E E+ IL HCH S+Y GH + KT KI +GF
Sbjct: 8 DVRRYLWDEPFLYKQCADNIYIRCVAEEEIPGILFHCHGSNYAGHFAVSKTVSKIQQAGF 187
Query: 1290 WWPSLFKDVHLFISKCDKCQRTGSITKRNEMPLNNILEVEIFDVWGVDFMGPFPSSFGNQ 1349
WWP++FKD H FISKCD CQR G+I+ RNEMP N ILEVE+FDVWG+DFMGPFPSS+ N+
Sbjct: 188 WWPTMFKDAHSFISKCDPCQRQGNIS*RNEMPQNFILEVEVFDVWGIDFMGPFPSSYNNK 367
Query: 1350 YILVAVDYVSKWVEAIASPTNDAQVVIKMFKKVIFPRFGVPRVVISDGGSHFISKHFEKL 1409
YILVAVDYVSKWVEAIASPTNDA VV+KMFK VIFPRFGVPRVVISDGGSHFI+K FEKL
Sbjct: 368 YILVAVDYVSKWVEAIASPTNDATVVVKMFKSVIFPRFGVPRVVISDGGSHFINKVFEKL 547
Query: 1410 LQKLGVRHKVATPYHPQ 1426
L+K GVRHKVAT YHPQ
Sbjct: 548 LKKNGVRHKVATAYHPQ 598
>TC86737 weakly similar to GP|6683624|dbj|BAA89272.1 Pol {Alternaria
alternata}, partial (21%)
Length = 1540
Score = 187 bits (476), Expect = 2e-47
Identities = 126/354 (35%), Positives = 176/354 (49%), Gaps = 3/354 (0%)
Frame = +1
Query: 754 VVKKEVLKLLDAGVIYPISDSKWVSPVQVVPKKGGLTVIKNDKNESIATRTVTGWRMCID 813
V+KK + LLD G I S S +PV V K GG G R C+D
Sbjct: 508 VLKKTLEDLLDKGFI-KASGSAAGAPVLFVRKPGG------------------GIRFCVD 630
Query: 814 YRKLNKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEKTTFTCPFG 873
YR LN T+KD +PLP I + L R+A F LD + F ++ I DQEKT F +G
Sbjct: 631 YRALNAITKKDRYPLPLISETLRRVAGARWFTKLDVVAAFHKMRIKDEDQEKTAFRTRYG 810
Query: 874 TFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGS-NFDDCLTNLEKVL 932
F + PFGL APATFQR + +F++ + ++DD ++ + + D + +VL
Sbjct: 811 LFEWIVCPFGLTGAPATFQRYINKTLHEFLDDFVTAYIDDVLIYTTGSKKDHEAQVRRVL 990
Query: 933 ERCEQVNLVLNWEKCHFMVREGIVLGH-LVSDRGIEVDRAKVEIIEKMLPPTSVKEIRSF 991
R L L+ +KC F V +G L + +G+ D K+ I LPP SVK RSF
Sbjct: 991 RRLADAGLSLDPKKCEFSVTTVKYVGFILTAGKGVSCDPLKLAAIRDWLPPGSVKGARSF 1170
Query: 992 LGHAGFYRRFIKDFSSITKPLTNLLLKDADFTFDDSCLQAFCRLKEALITAPIIQPPDWN 1051
LG +Y+ FI +S IT+PLT L KD F + AF +LK P+++ D
Sbjct: 1171 LGFCNYYKDFIPGYSEITEPLTRLTRKDFPFRWGAEQEAAFTKLKRLFAEEPVLRMFDPE 1350
Query: 1052 LPFEIMCDASDYAVGVVLGQRKDK-KMHAIYYASKTLDGAQVNYATTEKELLAV 1104
+ D S +A+G VL Q H + + S+ L A+ NY +KELLAV
Sbjct: 1351 AVTTVETDCSGFALGGVLTQEDGTGAAHPVAFHSQRLSPAEYNYPIHDKELLAV 1512
>BG587145 similar to PIR|H86337|H8 protein F5M15.26 [imported] - Arabidopsis
thaliana, partial (13%)
Length = 763
Score = 93.6 bits (231), Expect = 5e-19
Identities = 49/136 (36%), Positives = 80/136 (58%)
Frame = +2
Query: 858 IHPNDQEKTTFTCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVH 917
+HP+D EKT F GT+ Y+ MPFGL NA +T+QR + +F+D + MEV++DD V
Sbjct: 2 MHPDDLEKTAFITDRGTYCYKVMPFGLKNAGSTYQRLVNRMFADKLGNTMEVYIDDMLVK 181
Query: 918 GSNFDDCLTNLEKVLERCEQVNLVLNWEKCHFMVREGIVLGHLVSDRGIEVDRAKVEIIE 977
D L +L++ + ++ + LN KC F V G LG++V+ +GIEV+ ++ I
Sbjct: 182 SLRATDHLNHLKE*FKTLDEYIMKLNPAKCTFGVTSGEFLGYIVTQQGIEVNPKQITAIL 361
Query: 978 KMLPPTSVKEIRSFLG 993
+ P + +E++ G
Sbjct: 362 DLPSPKNSREVQRLTG 409
>TC77595 weakly similar to PIR|T18350|T18350 probable pol polyprotein - rice
blast fungus gypsy retroelement (fragment), partial (14%)
Length = 1708
Score = 88.6 bits (218), Expect = 2e-17
Identities = 56/201 (27%), Positives = 98/201 (47%), Gaps = 7/201 (3%)
Frame = +2
Query: 1260 SSILTHCHSSSYGGHASTQKTSFKILHSGFWWPSLFKDVHLFISKCDKCQ-----RTGSI 1314
+ ++ H S+ GH T +I+ F+WP + V F+ CD C R
Sbjct: 173 TKLVQESHDSTAAGHPGRNGT-LEIVSRKFFWPGQSQTVRRFVRNCDVCGGIHIWRQAKR 349
Query: 1315 TKRNEMPLNNILEVEIFDVWGVDFMGPFPSSFG--NQYILVAVDYVSKWVEAIASPTNDA 1372
+P+ N L ++ +DF+ P + G +QY+ V VD +SK V T +A
Sbjct: 350 GFLKPLPVPNRLHSDL----SMDFITSLPPTRGRGSQYLWVIVDRLSKSVTLEEMDTMEA 517
Query: 1373 QVVIKMFKKVIFPRFGVPRVVISDGGSHFISKHFEKLLQKLGVRHKVATPYHPQTSGQVE 1432
+ + F + G+P+ ++SD GS+++ + + + + GV ++T YHPQT G E
Sbjct: 518 EACAQRFLSCHYRFHGMPQSIVSDRGSNWVGRFWREFCRLTGVTQLLSTSYHPQTDGGTE 697
Query: 1433 VSNRQIKAILEKTVSTSRTDW 1453
N++I+A+L V S+ +W
Sbjct: 698 RWNQEIQAVLRAYVCWSQDNW 760
>BG586326 similar to PIR|G84493|G8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 736
Score = 86.3 bits (212), Expect = 8e-17
Identities = 52/145 (35%), Positives = 82/145 (55%)
Frame = +2
Query: 1041 TAPIIQPPDWNLPFEIMCDASDYAVGVVLGQRKDKKMHAIYYASKTLDGAQVNYATTEKE 1100
+API+ P+ + + + DAS +G VL Q + I YAS+ L + NY T + E
Sbjct: 11 SAPILVLPEL-ITYVVYTDASITGLGCVLTQHEK----VIAYASRQLRKHEGNYPTHDLE 175
Query: 1101 LLAVVYAIDKFRQYLVGSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKDKK 1160
+ AVV+A+ +R YL G+K+ ++TDH ++KY+ + + R RW+ + ++DL+I
Sbjct: 176 MAAVVFALKIWRSYLYGAKVQIHTDHKSLKYIFTQPELNLRQRRWMEFVADYDLDITYYP 355
Query: 1161 GVENVVADHLSRLREANKDELPLDD 1185
G N+VAD LSR R E DD
Sbjct: 356 GKANLVADALSRRRVDVSAEREADD 430
>BG644741
Length = 735
Score = 85.1 bits (209), Expect = 2e-16
Identities = 41/115 (35%), Positives = 61/115 (52%)
Frame = -2
Query: 28 DQETVRLHLFPFSLKNKASNWFNSLKPGSITSWDQLRREFLCRFFPPSKTAQLRGKLYQF 87
D + L +FP SL +A WF L SI +W+QLR FL R++P SK ++ F
Sbjct: 605 DLNVLGLRVFPLSLMGEADIWFTELPYNSIFTWNQLRDVFLARYYPVSKKLNHNDRVNNF 426
Query: 88 TQMNGESLFDVWERFKEILRRCPHHGLEKWLIIHIFYNGLTSSTKLTIDAAAGGA 142
+ GES+ W+RF LR P+H ++ + FY G + K+ +D AGG+
Sbjct: 425 VALPGESVSSSWDRFTSFLRSVPNHRIDDDSLKEYFYRGQDDNNKVVLDTIAGGS 261
>BG644693 weakly similar to GP|18767374|g Putative 22 kDa kafirin cluster;
Ty3-Gypsy type {Oryza sativa}, partial (15%)
Length = 716
Score = 79.3 bits (194), Expect = 1e-14
Identities = 60/224 (26%), Positives = 99/224 (43%)
Frame = +2
Query: 746 RLNPNMKEVVKKEVLKLLDAGVIYPISDSKWVSPVQVVPKKGGLTVIKNDKNESIATRTV 805
R+NP +V+K ++ LL+ G I P + P G+ V+ K +
Sbjct: 92 RINPLKLKVLKLQLKDLLEKGFIQP----------SIYP*--GVVVLFLKKKDGFL---- 223
Query: 806 TGWRMCIDYRKLNKATRKDHFPLPFIDQMLERLAKHSHFCYLDGYSGFFQIPIHPNDQEK 865
RM IDY +LN K +PLP ID++ + L F +D G Q + D K
Sbjct: 224 ---RMSIDYPQLNNVNIKIKYPLPLIDELFDNLQGSKWFFKIDLRLG*HQHRVIGEDVPK 394
Query: 866 TTFTCPFGTFAYRRMPFGLCNAPATFQRCMMSIFSDFVEKIMEVFMDDFSVHGSNFDDCL 925
T F +G + M FG N P F M +F D+++ ++ VF +D ++ N ++
Sbjct: 395 TAFRIRYGHYEILVMSFG*TNPPMAFMELMNRVFQDYLDSLVIVFSNDILIYSKNENEHE 574
Query: 926 TNLEKVLERCEQVNLVLNWEKCHFMVREGIVLGHLVSDRGIEVD 969
+L L+ + + L +V G H++S G++VD
Sbjct: 575 NHLRLALKVLKDIGL-CQISYV*ILVEVGFFSLHVISGEGLKVD 703
>BG580885
Length = 609
Score = 67.0 bits (162), Expect = 5e-11
Identities = 38/127 (29%), Positives = 70/127 (54%), Gaps = 2/127 (1%)
Frame = +3
Query: 3 FSGSPSEDPNLHISNFWRLSVTCKDDQETVRLHLFPFSLKNKASNWFN-SLKPGSIT-SW 60
F G+P+E P H+S F ++ ++ +FP +L+ +++ W++ +++P I+ SW
Sbjct: 54 FRGTPNESPITHLSRFNKVCRANNASSVEMQKKIFPVTLEEESALWYDLNIEPYYISLSW 233
Query: 61 DQLRREFLCRFFPPSKTAQLRGKLYQFTQMNGESLFDVWERFKEILRRCPHHGLEKWLII 120
D+++ FL ++ +LR +L Q E + + R + IL+R P HGLE +I
Sbjct: 234 DEIKLSFLQAYYEIEPVEELRSELMGIHQGEKERVRSYFLRLQWILKRWPEHGLEDDVIK 413
Query: 121 HIFYNGL 127
+F NGL
Sbjct: 414 GVFVNGL 434
>AL367832 weakly similar to GP|14091845|gb Putative retroelement {Oryza
sativa}, partial (2%)
Length = 384
Score = 62.0 bits (149), Expect = 2e-09
Identities = 32/100 (32%), Positives = 55/100 (55%)
Frame = -1
Query: 689 VNASLDEVETEKLLYVLKKYPKAIGYTIDDIKGINPSLCMHRILLEDDYKPSIEHQRRLN 748
V A+L+E K+ +L++Y + +D+ G++P + HRI + + P RR +
Sbjct: 300 VGAALEEGVKRKIFQLLREYLDIFACSYEDMPGLDPKIVEHRIPTKPECPPVR*KLRRTH 121
Query: 749 PNMKEVVKKEVLKLLDAGVIYPISDSKWVSPVQVVPKKGG 788
P+M +K EV K +DAG + + +WV+ + VPKK G
Sbjct: 120 PDMALKIKSEVQKQIDAGFLMTVEYPEWVANIVPVPKKDG 1
>BG587150 similar to GP|13592175|gb ppg3 {Leishmania major}, partial (1%)
Length = 754
Score = 61.2 bits (147), Expect = 3e-09
Identities = 55/231 (23%), Positives = 101/231 (42%), Gaps = 1/231 (0%)
Frame = +2
Query: 323 KPLEDPIRRTETDHSEKEIREPPSRETRAEKEEPRVE-GNTTPPFKPKIPFPQRFAKSKL 381
KP ++P T T HS+ + E RV G K K+ + +
Sbjct: 5 KPSDNPPEATST-HSD---------DAAGPMEVDRVHMGRNLRKRKKKVA--KHLKRGAN 148
Query: 382 DEQFKKFMEMMNKIYIDVPFTEVLTQMPTYAKFLKEILSKKRKIEESETVNLTEECSAII 441
+++ + F + + I ++ PF E + L + R+ EE E +
Sbjct: 149 EKEMESFQKRVFMIPLEKPFEEAY-----FTHRLWMFFRETRETEEDIRRMFCEAREKMK 313
Query: 442 QNKLPPKLKDPGSFSIPCVIGSEVVKKAMCDLGASVSLMPLSLYERLGIGELKSTRMTLQ 501
+ K D G F+I + A+C+ GASV ++P + + LG+ ++ ++ +
Sbjct: 314 KRITLKKKSDSGKFAISWTMKGIEFPHALCNTGASVIILPRDMADHLGL-KVDPSKESFT 490
Query: 502 LADRSVKYPAGIIEDVPVKVGEVYIPADFVVMEMEEDNQVPILLGRPFLAT 552
D S + GII D+ V++G +P DF V++++ + +LL R FL+T
Sbjct: 491 FVDCSQRSSGGIIRDLEVQIGNALVPVDFHVLDIKINWNSSLLLRRAFLST 643
>AJ497987 weakly similar to GP|9927273|dbj Similar to Arabidopsis thaliana
chromosome II BAC F26H6; putative retroelement pol
polyprotein, partial (1%)
Length = 636
Score = 58.2 bits (139), Expect = 2e-08
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Frame = -2
Query: 1099 KELLAVVYAIDKFRQYLVGSKIIVYTDHSAIKYLLNKKDAKPRLIRWILLLQEFDLEIKD 1158
K A+ +A + R Y++ + + IKY+ K R+ RW +LL E+D+E +
Sbjct: 635 KTCCALAWAAKRLRHYMINHTTWLVSKMDPIKYIFEKPALTGRIARWQMLLSEYDIEYRS 456
Query: 1159 KKGVE-NVVADHLSRLREANKDELPLDDSFPDDQLFLLAQTD 1199
+K ++ +++ADHL+ + +D P+ FPD+++ L D
Sbjct: 455 QKAIKGSILADHLA--HQPLEDYRPIKFDFPDEEIMYLKMKD 336
>BG586308 weakly similar to PIR|F84528|F8 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 686
Score = 54.3 bits (129), Expect = 3e-07
Identities = 24/67 (35%), Positives = 41/67 (60%)
Frame = -2
Query: 1388 GVPRVVISDGGSHFISKHFEKLLQKLGVRHKVATPYHPQTSGQVEVSNRQIKAILEKTVS 1447
G+P +++D GSHFIS F + ++ +R A+P +PQ++GQ E SN+ I L+K +
Sbjct: 682 GLPYEIVTDNGSHFISNKFREFCERWRIRLNTASPRYPQSNGQAEASNKIIIDGLKKRLD 503
Query: 1448 TSRTDWS 1454
+ W+
Sbjct: 502 LKKGCWA 482
>BG582085
Length = 824
Score = 51.2 bits (121), Expect = 3e-06
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = -3
Query: 1140 PRLIRWILLLQEFDLEIKDKK--GVENVVADHLSRLREANKDELPLDDSFPDDQLFLLAQ 1197
P +R ILL QEFDLE + ++ G+ ++A R ++ ++E+ + + FP++QLF ++Q
Sbjct: 771 P*RLRCILLCQEFDLESRQERETGMW*LIAFPCLRNKQVTQNEISIKERFPNEQLFAISQ 592
Query: 1198 TDAPWYADFVNF 1209
PW+AD NF
Sbjct: 591 --RPWFADMTNF 562
Score = 29.6 bits (65), Expect = 8.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 1253 CIPESEVSSILTHCHSSSYGGHAS 1276
C+ E + IL H HSSSY GH S
Sbjct: 530 CVGEKVIKDIL*HHHSSSYMGHHS 459
>CA860311 weakly similar to GP|7289872|gb|A CG17427 gene product {Drosophila
melanogaster}, partial (20%)
Length = 192
Score = 50.4 bits (119), Expect = 5e-06
Identities = 26/61 (42%), Positives = 36/61 (58%), Gaps = 1/61 (1%)
Frame = +1
Query: 1060 ASDYAVGVVLGQRKDKKM-HAIYYASKTLDGAQVNYATTEKELLAVVYAIDKFRQYLVGS 1118
A D+ +G L Q+ ++ H I YAS+ L A+ NY E+E LA ++AI FR YL G
Sbjct: 1 APDWGIGAGLSQKDEENHEHPIAYASRLLTAAERNYTVVERECLAAIWAIRNFRHYLHGP 180
Query: 1119 K 1119
K
Sbjct: 181 K 183
>BG644740 similar to PIR|A84460|A84 probable retroelement pol polyprotein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 754
Score = 45.8 bits (107), Expect = 1e-04
Identities = 18/41 (43%), Positives = 29/41 (69%)
Frame = -1
Query: 808 WRMCIDYRKLNKATRKDHFPLPFIDQMLERLAKHSHFCYLD 848
+RMCIDYR+ NK T K+ +PLP ID + +++ + +F +D
Sbjct: 202 FRMCIDYRQFNKVTTKNKYPLPRIDNLFDKIQEDCYF*NID 80
>BE999414
Length = 613
Score = 39.7 bits (91), Expect = 0.009
Identities = 21/62 (33%), Positives = 32/62 (50%)
Frame = +3
Query: 10 DPNLHISNFWRLSVTCKDDQETVRLHLFPFSLKNKASNWFNSLKPGSITSWDQLRREFLC 69
DP+ H+ N + +T + + V+ LF +L+ A WF +L+ SI SW L EF
Sbjct: 33 DPDEHMENI-EVVLTYRSVRGAVKCKLFVTTLRRGAMTWFKNLRRNSIGSWGDLCHEFTT 209
Query: 70 RF 71
F
Sbjct: 210HF 215
>BE997611
Length = 547
Score = 39.7 bits (91), Expect = 0.009
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = -2
Query: 378 KSKLDEQFKKFMEMMNKIYIDVPFTEVLTQMPTYAKFLKEILSKKRKIEESETVNLTEEC 437
+ ++ +F ++ +++P TE + Q+P KFL+E+L + E E ++L+ E
Sbjct: 444 EKEVPPKFNALHHILKGYKVNMPITETVEQIPCCIKFLQELLKTNANLSEEEFISLSSEF 265
Query: 438 SAIIQNKLPPKLKDPGSFS---IPCVIGSEVV 466
+ + G F+ +P +IG+ ++
Sbjct: 264 HHTYEVPAVVRFDGEGCFTLRFVPRIIGTHLI 169
>AL366605
Length = 422
Score = 36.6 bits (83), Expect = 0.073
Identities = 24/93 (25%), Positives = 43/93 (45%)
Frame = -3
Query: 11 PNLHISNFWRLSVTCKDDQETVRLHLFPFSLKNKASNWFNSLKPGSITSWDQLRREFLCR 70
P HI + R KD+ +++ +H F SL A+ W+ SL I ++D+L F
Sbjct: 291 PQNHIIKYVRKMGNYKDN-DSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSH 115
Query: 71 FFPPSKTAQLRGKLYQFTQMNGESLFDVWERFK 103
+ ++ R L +Q ES + +R++
Sbjct: 114 YGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 16
>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
arietinum}, partial (8%)
Length = 516
Score = 36.2 bits (82), Expect = 0.095
Identities = 23/91 (25%), Positives = 41/91 (44%), Gaps = 5/91 (5%)
Frame = +2
Query: 30 ETVRLHLFPFSLKNKASNWFNSLKP-----GSITSWDQLRREFLCRFFPPSKTAQLRGKL 84
ET ++ L +A +W+ SL P ++ +W R+EFL R+FP + +
Sbjct: 221 ETQKVQFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFRKEFLGRYFPEDVRGKKEIEF 400
Query: 85 YQFTQMNGESLFDVWERFKEILRRCPHHGLE 115
+ Q S+ + +F E+ PH+ E
Sbjct: 401 LELKQ-GDMSVTEYAAKFVELATFYPHYSAE 490
>AL387995
Length = 486
Score = 32.0 bits (71), Expect = 1.8
Identities = 26/130 (20%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Frame = +2
Query: 228 CNLTSVEQLNFVQNGQRVVQKSHIELLMKNLFFKQSEQLQELKDQTRLLNNSLATLTTKI 287
C + E+++ ++ +V ++I+ L K L + E E D+T + + + ++
Sbjct: 53 CERQASEEISLIRGPDKVKYIANIKYLRKLLEQIEKEVNSEQIDKTAI--SEYSRKIQQL 226
Query: 288 DSIYSHNKISE--TQLSQVVRKAGHPNKMNAVTLRSGKPLEDPIRRTETDHSEKEIREPP 345
+I NK++ T+ R H N+ A + + +R+ E + E+ ++ P
Sbjct: 227 SNIVDENKLTSPVTRTFSQARFVNHANQTQAEKNKENQLELKMVRQAEKEQKEELLQPPT 406
Query: 346 SRETRAEKEE 355
+ RA + E
Sbjct: 407 TFTXRARRYE 436
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,229,096
Number of Sequences: 36976
Number of extensions: 685758
Number of successful extensions: 3273
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 3220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3261
length of query: 1454
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1346
effective length of database: 5,021,319
effective search space: 6758695374
effective search space used: 6758695374
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Medicago: description of AC135959.8