TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135848.1 + phase: 0 
         (64 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93141 similar to GP|18491261|gb|AAL69455.1 At2g41130/T3K9.10 {...    31  0.082
TC77912 homologue to GP|10176853|dbj|BAB10059. beta tubulin {Ara...    29  0.31

>TC93141 similar to GP|18491261|gb|AAL69455.1 At2g41130/T3K9.10 {Arabidopsis
           thaliana}, partial (57%)
          Length = 839

 Score = 31.2 bits (69), Expect = 0.082
 Identities = 14/24 (58%), Positives = 18/24 (74%)
 Frame = +2

Query: 8   LLSMKAKVVKVEMVTVGGRTRSVL 31
           L S+  K +K EM T+GGRTR+VL
Sbjct: 710 LKSLHLKTLKAEMATLGGRTRNVL 781


>TC77912 homologue to GP|10176853|dbj|BAB10059. beta tubulin {Arabidopsis
           thaliana}, complete
          Length = 1732

 Score = 29.3 bits (64), Expect = 0.31
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = -1

Query: 12  KAKVVKVEMVTVGGRTRSVL--WVQGVENESLGMLKSTLKVVMHKPSFKMR 60
           K KV++ E +TV  R+ ++   W+Q  EN S     +T  VV+H  SF+++
Sbjct: 406 KNKVIRPENLTVWTRSDAIHSPWLQIHENSSRNESSTTRFVVVHIDSFELK 254


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.319    0.129    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,423,098
Number of Sequences: 36976
Number of extensions: 10124
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of query: 64
length of database: 9,014,727
effective HSP length: 40
effective length of query: 24
effective length of database: 7,535,687
effective search space: 180856488
effective search space used: 180856488
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)