TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135801.4 + phase: 0 
         (61 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC80772 similar to SP|Q9SUM2|RUXF_ARATH Probable small nuclear r...   127  9e-31
TC88140 similar to PIR|T47805|T47805 U6 snRNA-associated Sm-like...    50  2e-07
TC82092 similar to PIR|H86164|H86164 hypothetical protein AAC721...    30  0.24
TC86384 similar to GP|21593343|gb|AAM65292.1 small nuclear ribon...    30  0.24
TC86383 similar to GP|21593343|gb|AAM65292.1 small nuclear ribon...    30  0.24
TC77193 homologue to GP|21593495|gb|AAM65462.1 glycine rich prot...    29  0.32
TC77194 homologue to GP|21593495|gb|AAM65462.1 glycine rich prot...    29  0.32
TC77971 similar to PIR|T06794|T06794 vacuolar sorting receptor p...    27  1.2
TC83080 similar to PIR|E86445|E86445 hypothetical protein AAG234...    26  3.5
TC86696 similar to GP|3860331|emb|CAA10133.1 hypothetical protei...    25  7.8

>TC80772 similar to SP|Q9SUM2|RUXF_ARATH Probable small nuclear
           ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F)
           (SmF). [Mouse-ear cress], partial (96%)
          Length = 599

 Score =  127 bits (319), Expect = 9e-31
 Identities = 61/61 (100%), Positives = 61/61 (100%)
 Frame = +1

Query: 1   MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 60
           MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD
Sbjct: 187 MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDAAD 366

Query: 61  D 61
           D
Sbjct: 367 D 369


>TC88140 similar to PIR|T47805|T47805 U6 snRNA-associated Sm-like protein -
           Arabidopsis thaliana, complete
          Length = 649

 Score = 49.7 bits (117), Expect = 2e-07
 Identities = 20/46 (43%), Positives = 29/46 (62%)
 Frame = +2

Query: 1   MEYKGYLVSVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVLYM 46
           ++Y+G L  +D YMN+ +  TEEY+ G      G+  IR NNVLY+
Sbjct: 209 VDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRGNNVLYI 346


>TC82092 similar to PIR|H86164|H86164 hypothetical protein AAC72111.1
           [imported] - Arabidopsis thaliana, partial (80%)
          Length = 311

 Score = 29.6 bits (65), Expect = 0.24
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 4   KGYLVSVDSYMNLQLANTEEYIEGNFTGNLG--EILIRCNNVLYMRGVPEDEEIE 56
           +G L SVD Y+N++L NT    +  +   L      IR + V Y++  PE  +IE
Sbjct: 103 RGTLHSVDQYLNIKLENTRVVDQDRYPHMLSVRNCFIRGSVVRYVQLPPEGGDIE 267


>TC86384 similar to GP|21593343|gb|AAM65292.1 small nuclear
           ribonucleoprotein homolog {Arabidopsis thaliana},
           complete
          Length = 658

 Score = 29.6 bits (65), Expect = 0.24
 Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
 Frame = +1

Query: 1   MEYKGYLVSVDSYMNLQLANTEEY-IEGNFTGNLGEILIRCNNVLYM 46
           +  +G ++  D YMNL L + EE  ++      LG IL++ +N+  M
Sbjct: 217 LRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLM 357


>TC86383 similar to GP|21593343|gb|AAM65292.1 small nuclear
           ribonucleoprotein homolog {Arabidopsis thaliana},
           complete
          Length = 684

 Score = 29.6 bits (65), Expect = 0.24
 Identities = 15/47 (31%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
 Frame = +2

Query: 1   MEYKGYLVSVDSYMNLQLANTEEY-IEGNFTGNLGEILIRCNNVLYM 46
           +  +G ++  D YMNL L + EE  ++      LG IL++ +N+  M
Sbjct: 185 LRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLM 325


>TC77193 homologue to GP|21593495|gb|AAM65462.1 glycine rich protein-like
           {Arabidopsis thaliana}, partial (85%)
          Length = 989

 Score = 29.3 bits (64), Expect = 0.32
 Identities = 22/63 (34%), Positives = 35/63 (54%), Gaps = 4/63 (6%)
 Frame = +2

Query: 3   YKGYLVSVDSYMNLQLANTEEYI----EGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDA 58
           Y G+LV+ D++MN+ L    E I    +G+    + E  IR N + Y+R VP DE I+  
Sbjct: 179 YNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPECYIRGNTIKYLR-VP-DEVIDKV 343

Query: 59  ADD 61
            ++
Sbjct: 344 QEE 352


>TC77194 homologue to GP|21593495|gb|AAM65462.1 glycine rich protein-like
           {Arabidopsis thaliana}, partial (96%)
          Length = 700

 Score = 29.3 bits (64), Expect = 0.32
 Identities = 22/63 (34%), Positives = 35/63 (54%), Gaps = 4/63 (6%)
 Frame = +3

Query: 3   YKGYLVSVDSYMNLQLANTEEYI----EGNFTGNLGEILIRCNNVLYMRGVPEDEEIEDA 58
           Y G+LV+ D++MN+ L    E I    +G+    + E  IR N + Y+R VP DE I+  
Sbjct: 234 YNGHLVNCDTWMNIHL---REVICTSKDGDRFWRMPECYIRGNTIKYLR-VP-DEVIDKV 398

Query: 59  ADD 61
            ++
Sbjct: 399 QEE 407


>TC77971 similar to PIR|T06794|T06794 vacuolar sorting receptor protein
           BP-80 - garden pea, partial (97%)
          Length = 2578

 Score = 27.3 bits (59), Expect = 1.2
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 5/34 (14%)
 Frame = +3

Query: 3   YKGYLVSV-----DSYMNLQLANTEEYIEGNFTG 31
           + G++V V     D+++N ++   EE +EG+FTG
Sbjct: 357 FNGFIVRVSVTIVDAFINGEIRGGEEQLEGDFTG 458


>TC83080 similar to PIR|E86445|E86445 hypothetical protein AAG23445.1
           [imported] - Arabidopsis thaliana, partial (11%)
          Length = 1147

 Score = 25.8 bits (55), Expect = 3.5
 Identities = 13/36 (36%), Positives = 18/36 (49%)
 Frame = -2

Query: 9   SVDSYMNLQLANTEEYIEGNFTGNLGEILIRCNNVL 44
           S  SYMN +    E  I   FT NL    + C+N++
Sbjct: 900 SYSSYMNSKDCRKELNISKQFTTNLALFRMTCDNIV 793


>TC86696 similar to GP|3860331|emb|CAA10133.1 hypothetical protein {Cicer
           arietinum}, partial (90%)
          Length = 733

 Score = 24.6 bits (52), Expect = 7.8
 Identities = 15/48 (31%), Positives = 26/48 (53%), Gaps = 1/48 (2%)
 Frame = +1

Query: 6   YLVSVDSY-MNLQLANTEEYIEGNFTGNLGEILIRCNNVLYMRGVPED 52
           + VS  +Y +NL++   + Y   +   NLGE++I    V+    VPE+
Sbjct: 256 FTVSDTAYELNLKIMEKDNYSADD---NLGEVIIPLETVIQEGSVPEN 390


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.313    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,394,956
Number of Sequences: 36976
Number of extensions: 11527
Number of successful extensions: 44
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of query: 61
length of database: 9,014,727
effective HSP length: 37
effective length of query: 24
effective length of database: 7,646,615
effective search space: 183518760
effective search space used: 183518760
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)