BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135797.5 - phase: 0
(144 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80568 weakly similar to PIR|T45907|T45907 hypothetical protein... 284 1e-77
TC87288 similar to PIR|S64423|S64423 probable membrane protein Y... 114 1e-26
TC80909 weakly similar to SP|Q05753|AKR_ARATH Ankyrin repeat pro... 34 0.023
BQ137242 similar to GP|9800281|gb|A pR69 {rat cytomegalovirus Ma... 32 0.088
TC85290 similar to GP|7767653|gb|AAF69150.1| F27F5.2 {Arabidopsi... 32 0.12
CA859131 weakly similar to GP|23496809|gb| 101 kd malaria antige... 31 0.20
TC81635 similar to GP|9758254|dbj|BAB08753.1 contains similarity... 31 0.20
TC93295 weakly similar to GP|5821157|dbj|BAA83720.1 GAMP {Procam... 30 0.33
AA660209 similar to GP|6642637|gb|A unknown protein {Arabidopsis... 29 0.57
BQ150123 similar to GP|21109992|gb| TonB-dependent receptor {Xan... 29 0.57
BQ137234 similar to EGAD|35719|3709 hypothetical protein {Burkho... 29 0.57
TC85442 similar to GP|13543783|gb|AAH06040.1 Unknown (protein fo... 29 0.75
TC81302 similar to GP|15529202|gb|AAK97695.1 AT3g01160/T4P13_15 ... 29 0.75
TC90881 weakly similar to GP|21327989|dbj|BAC00578. contains EST... 28 0.97
TC82452 weakly similar to GP|2088657|gb|AAB95289.1| unknown prot... 28 1.3
TC83625 similar to GP|8096269|dbj|BAA95789.1 KED {Nicotiana taba... 28 1.3
TC81816 similar to GP|8096269|dbj|BAA95789.1 KED {Nicotiana taba... 28 1.3
TC85909 similar to GP|13277342|emb|CAC34417. Germin-like protein... 28 1.7
CA920908 homologue to PIR|T06377|T06 SAR DNA-binding protein-1 -... 28 1.7
TC77805 similar to GP|20127064|gb|AAM10951.1 putative bHLH trans... 27 2.2
>TC80568 weakly similar to PIR|T45907|T45907 hypothetical protein F4P12.370
- Arabidopsis thaliana, partial (20%)
Length = 827
Score = 284 bits (726), Expect = 1e-77
Identities = 138/138 (100%), Positives = 138/138 (100%)
Frame = +3
Query: 7 APSELKSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKN 66
APSELKSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKN
Sbjct: 96 APSELKSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKN 275
Query: 67 AKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIEGSSEFDSLDVCSQDSNCGS 126
AKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIEGSSEFDSLDVCSQDSNCGS
Sbjct: 276 AKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIEGSSEFDSLDVCSQDSNCGS 455
Query: 127 SFLKKSVTEVHYSVAEAQ 144
SFLKKSVTEVHYSVAEAQ
Sbjct: 456 SFLKKSVTEVHYSVAEAQ 509
>TC87288 similar to PIR|S64423|S64423 probable membrane protein YGR115c -
yeast (Saccharomyces cerevisiae), partial (9%)
Length = 935
Score = 114 bits (286), Expect = 1e-26
Identities = 69/137 (50%), Positives = 86/137 (62%)
Frame = +1
Query: 7 APSELKSALKGSRDKNGEPHGKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKN 66
AP++L SA+KGSR K+ KL+VKWA DVYDPVPTL SHTV+ KKQ KSR KK+EKK
Sbjct: 232 APAKLVSAMKGSRKKHLGSQMKLSVKWAPDVYDPVPTLSSHTVRTKKQHKSRIKKSEKKG 411
Query: 67 AKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIEGSSEFDSLDVCSQDSNCGS 126
KK KG+ ++G + KDKKQ R +S C K +D+ S E ++LDV DS +
Sbjct: 412 VKKSQKGSYSKGCSSKDKKQYRYRWPES--CGKGFDA-----SMELNNLDVAGHDSYHAT 570
Query: 127 SFLKKSVTEVHYSVAEA 143
S K TE V EA
Sbjct: 571 SNSKIPATESPCHVGEA 621
>TC80909 weakly similar to SP|Q05753|AKR_ARATH Ankyrin repeat protein
(AKRP). [Mouse-ear cress] {Arabidopsis thaliana},
partial (21%)
Length = 1082
Score = 33.9 bits (76), Expect = 0.023
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Frame = +3
Query: 11 LKSALKGSRDKNGEPH--GKLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKNAK 68
L S+ + + N E H G V DP+ + + N K+PK KK ++ K
Sbjct: 132 LSSSYQNDNNDNDEEHIIGDCLVFEEGIFEDPIFPTSDNNLVNNKKPKPISKKKKQTVIK 311
Query: 69 KGN----KGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIEGSSEFDSLD---VCSQD 121
N K + G KK+ + + + SK + + I EF+S + +Q+
Sbjct: 312 SENLVPGKWKEVQAGINITKKEQPKIAQEIEFNSKE-ERRKIAQEFEFNSKEERRKIAQE 488
Query: 122 SNCGSSFLKKSVTEVH 137
S+F+KK VH
Sbjct: 489 FEFNSNFMKKKSGLVH 536
>BQ137242 similar to GP|9800281|gb|A pR69 {rat cytomegalovirus Maastricht},
partial (2%)
Length = 1023
Score = 32.0 bits (71), Expect = 0.088
Identities = 15/35 (42%), Positives = 20/35 (56%)
Frame = +1
Query: 52 KKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQ 86
+KQ K R+KKN KKN KK + +G G K+
Sbjct: 130 RKQGKRREKKNTKKNTKKTQRKKKKKGERGAITKR 234
>TC85290 similar to GP|7767653|gb|AAF69150.1| F27F5.2 {Arabidopsis
thaliana}, partial (32%)
Length = 1558
Score = 31.6 bits (70), Expect = 0.12
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 52 KKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNV 90
KK+PK RKK+ KKN K+ K R N + K Q ++
Sbjct: 757 KKRPKKRKKEKRKKNVKRRRK--KRRKENVRKKNQKNDI 867
>CA859131 weakly similar to GP|23496809|gb| 101 kd malaria antigen
{Plasmodium falciparum 3D7}, partial (4%)
Length = 395
Score = 30.8 bits (68), Expect = 0.20
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +2
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGN 80
K +K+ K +K+K KKN KKG K T+ N
Sbjct: 152 KKRKERKRKKRKKNKKNKKKGKKT*MTKRKN 244
>TC81635 similar to GP|9758254|dbj|BAB08753.1 contains similarity to
NRK-related kinase~gene_id:MWC10.1 {Arabidopsis
thaliana}, partial (84%)
Length = 1419
Score = 30.8 bits (68), Expect = 0.20
Identities = 24/78 (30%), Positives = 39/78 (49%), Gaps = 6/78 (7%)
Frame = +3
Query: 65 KNAKKGNKGNSTR---GGNGKD-KKQSRNVCGQSDLCSKSWDSQVIEGSSEFDSLDVC-- 118
K+ ++GN T GN +D +K+ R+V S K W QV+EG + D C
Sbjct: 414 KDDERGNINFITEVCTSGNLRDYRKKHRHV---SIKAFKKWSKQVLEGLEYLHTHDPCII 584
Query: 119 SQDSNCGSSFLKKSVTEV 136
+D NC + F+ ++ +V
Sbjct: 585 HRDLNCSNIFVNGNIGQV 638
>TC93295 weakly similar to GP|5821157|dbj|BAA83720.1 GAMP {Procambarus
clarkii}, partial (11%)
Length = 504
Score = 30.0 bits (66), Expect = 0.33
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 50 KNKKQPKSRKKKNEKKNAKKGNK 72
K +K+ K +K+K KKN KKG K
Sbjct: 370 KKRKERKRKKRKKNKKNKKKGKK 438
>AA660209 similar to GP|6642637|gb|A unknown protein {Arabidopsis
thaliana}, partial (4%)
Length = 544
Score = 29.3 bits (64), Expect = 0.57
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +1
Query: 49 VKNKKQP---KSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
VK KK+ K +K K++K+ K+ NK + G+GKDK + +
Sbjct: 28 VKEKKEEGKEKIKKNKDDKRGEKRXNK--EEKKGHGKDKDRDK 150
>BQ150123 similar to GP|21109992|gb| TonB-dependent receptor {Xanthomonas
axonopodis pv. citri str. 306}, partial (2%)
Length = 1131
Score = 29.3 bits (64), Expect = 0.57
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 60 KKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
+K EK+N ++G K +GG GK+ ++++
Sbjct: 32 EKTEKRNGREGRKRTEGKGGGGKEGQKNK 118
Score = 28.9 bits (63), Expect = 0.75
Identities = 12/39 (30%), Positives = 24/39 (60%)
Frame = +1
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
+N++ K++++ +KKN +KG +G GG + K+ R
Sbjct: 25 RNRENRKAKRQGRKKKNRRKGGRG---EGGTKEQKRAER 132
>BQ137234 similar to EGAD|35719|3709 hypothetical protein {Burkholderia
cepacia}, partial (6%)
Length = 1184
Score = 29.3 bits (64), Expect = 0.57
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 9/48 (18%)
Frame = +3
Query: 50 KNKKQPKSRKKKNE----KKNAKKGNKGN-----STRGGNGKDKKQSR 88
K + +P++++KK E K AKKG +GN +T G+++++ R
Sbjct: 258 KQEAEPEAKRKKRERTKTKNKAKKGRRGNKKEKKTTPKETGRERREGR 401
>TC85442 similar to GP|13543783|gb|AAH06040.1 Unknown (protein for MGC:7642)
{Mus musculus}, partial (62%)
Length = 585
Score = 28.9 bits (63), Expect = 0.75
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSR 88
K +++ K RKK +KN +K + R GK KK+ +
Sbjct: 121 KKQRRKKRRKKGKRRKNQRKKKRKRKRRKKKGKRKKRRK 237
Score = 27.3 bits (59), Expect = 2.2
Identities = 14/57 (24%), Positives = 27/57 (46%)
Frame = +3
Query: 28 KLTVKWAADVYDPVPTLVSHTVKNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDK 84
KL W AD+ P + + K++PK + K E++ ++ K + G K++
Sbjct: 9 KLRKYWQADIISVGP---AKEPEKKEEPKKEEPKKEEEKKEEAKKEEEKKEGEKKEE 170
>TC81302 similar to GP|15529202|gb|AAK97695.1 AT3g01160/T4P13_15
{Arabidopsis thaliana}, partial (11%)
Length = 674
Score = 28.9 bits (63), Expect = 0.75
Identities = 22/58 (37%), Positives = 26/58 (43%)
Frame = +1
Query: 50 KNKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQVIE 107
KN K +KKK KKN G GKD + N +SD S S D +VIE
Sbjct: 118 KNHDDNKGKKKKMMKKN------------GKGKDNSSNSN---KSDKPSHSNDKEVIE 246
>TC90881 weakly similar to GP|21327989|dbj|BAC00578. contains ESTs
AU093876(E1018) AU093877(E1018)~unknown protein, partial
(10%)
Length = 655
Score = 28.5 bits (62), Expect = 0.97
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +2
Query: 59 KKKNEKKNAKKGNKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDS 103
KK ++ K N G+ + N DKK N S S SW+S
Sbjct: 254 KKGSDNVEGWKSNNGSGSWNQNSSDKKDGGNWTSASGGASGSWNS 388
>TC82452 weakly similar to GP|2088657|gb|AAB95289.1| unknown protein
{Arabidopsis thaliana}, partial (12%)
Length = 1702
Score = 28.1 bits (61), Expect = 1.3
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 6/69 (8%)
Frame = +1
Query: 51 NKKQPKSRKKKNEKKNAKKGNKGNSTRGGNGKDKKQ------SRNVCGQSDLCSKSWDSQ 104
+K + S K + + ++ + N + GK K Q S+N Q+ S+ WDSQ
Sbjct: 484 SKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKSQENHPWDSKNESNQT-AGSRGWDSQ 660
Query: 105 VIEGSSEFD 113
V +SE D
Sbjct: 661 VASANSESD 687
>TC83625 similar to GP|8096269|dbj|BAA95789.1 KED {Nicotiana tabacum},
partial (9%)
Length = 908
Score = 28.1 bits (61), Expect = 1.3
Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = +2
Query: 51 NKKQPKSRKKKNEKKNAK--KGNKGNSTRGGNGKDKKQSRN 89
++K+ K +KKK +K+ K K G + K+KK+ +N
Sbjct: 704 DEKKDKEKKKKEKKEKGKEDKDKDGEEKKSKKDKEKKKDKN 826
Score = 26.9 bits (58), Expect = 2.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 56 KSRKKKNEKKNAKKGNKGNSTRGGNGKDKK 85
KS +K +EKK K K + T GKDKK
Sbjct: 551 KSVEKDDEKKEKKDKEKKDKTDVDEGKDKK 640
>TC81816 similar to GP|8096269|dbj|BAA95789.1 KED {Nicotiana tabacum},
partial (13%)
Length = 663
Score = 28.1 bits (61), Expect = 1.3
Identities = 13/41 (31%), Positives = 23/41 (55%), Gaps = 2/41 (4%)
Frame = +3
Query: 51 NKKQPKSRKKKNEKKNAK--KGNKGNSTRGGNGKDKKQSRN 89
++K+ K +KKK +K+ K K G + K+KK+ +N
Sbjct: 312 DEKKDKEKKKKEKKEKGKEDKDKDGEEKKSKKDKEKKKDKN 434
Score = 26.9 bits (58), Expect = 2.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 56 KSRKKKNEKKNAKKGNKGNSTRGGNGKDKK 85
KS +K +EKK K K + T GKDKK
Sbjct: 159 KSVEKDDEKKEKKDKEKKDKTDVDEGKDKK 248
>TC85909 similar to GP|13277342|emb|CAC34417. Germin-like protein {Pisum
sativum}, partial (95%)
Length = 1551
Score = 27.7 bits (60), Expect = 1.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 56 KSRKKKNEKKNAKKGNKGNSTRGG 79
K +KKK +KK KK K + RGG
Sbjct: 826 KKKKKKKKKKKKKKKKKKKTLRGG 897
Score = 26.9 bits (58), Expect = 2.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 50 KNKKQPKSRKKKNEKKNAKKG 70
K KK+ K +KKK +KKN + G
Sbjct: 834 KKKKKKKKKKKKKKKKNLEGG 896
>CA920908 homologue to PIR|T06377|T06 SAR DNA-binding protein-1 - garden pea,
partial (37%)
Length = 748
Score = 27.7 bits (60), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 5/43 (11%)
Frame = -2
Query: 51 NKKQPKSRKKKNEKKNAKKGNKGNS-----TRGGNGKDKKQSR 88
+KK+ K KKK EKK + K N+ T+ + DKK+ +
Sbjct: 150 DKKKEKKEKKKKEKKEEEDTQKSNTAMDEDTQEPSAADKKKEK 22
>TC77805 similar to GP|20127064|gb|AAM10951.1 putative bHLH transcription
factor {Arabidopsis thaliana}, partial (30%)
Length = 2068
Score = 27.3 bits (59), Expect = 2.2
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 5/66 (7%)
Frame = +3
Query: 49 VKNKKQPKSRKKKNEKKNAKKGNKGNSTRG--GNGKD---KKQSRNVCGQSDLCSKSWDS 103
VK SRK+K K N N T+G G+G+D KK N +++ ++ +
Sbjct: 876 VKASPDMNSRKRKASSSKGKAPNSTNPTKGVEGSGEDFNAKKIKANEGERNENGVRNMEE 1055
Query: 104 QVIEGS 109
++ EG+
Sbjct: 1056EIKEGT 1073
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.305 0.123 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,252,394
Number of Sequences: 36976
Number of extensions: 53071
Number of successful extensions: 410
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of query: 144
length of database: 9,014,727
effective HSP length: 87
effective length of query: 57
effective length of database: 5,797,815
effective search space: 330475455
effective search space used: 330475455
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC135797.5