BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135796.1 - phase: 0 /pseudo
(149 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC89449 similar to GP|17473570|gb|AAL38260.1 putative protein {A... 166 3e-44
AJ503842 similar to GP|15982737|gb| AT4g23750/F9D16_220 {Arabido... 79 9e-16
TC87696 similar to GP|9759176|dbj|BAB09791.1 contains similarity... 77 3e-15
TC90093 similar to PIR|T47955|T47955 hypothetical protein F15G16... 75 1e-14
AW685524 homologue to GP|15982737|gb| AT4g23750/F9D16_220 {Arabi... 74 2e-14
TC93662 similar to GP|10177219|dbj|BAB10294. contains similarity... 74 3e-14
TC76517 similar to GP|11994632|dbj|BAB02769. AP2 domain transcri... 70 4e-13
TC90582 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_18... 69 7e-13
TC90274 similar to GP|10177219|dbj|BAB10294. contains similarity... 69 9e-13
BG586667 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabid... 68 1e-12
TC76795 similar to GP|18496063|emb|CAD21849. ethylene responsive... 68 2e-12
TC76792 similar to GP|3264767|gb|AAC24587.1| AP2 domain containi... 68 2e-12
AW559374 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabid... 68 2e-12
TC82756 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_18... 67 2e-12
TC86558 similar to GP|20805105|dbj|BAB92777. contains ESTs AU065... 67 3e-12
TC87581 weakly similar to GP|4099914|gb|AAD00708.1| ethylene-res... 65 1e-11
BG448686 similar to GP|10177219|dbj contains similarity to AP2 d... 64 2e-11
BF650547 similar to GP|9758388|dbj| AP2 domain transcription fac... 64 3e-11
TC78789 homologue to PIR|T48580|T48580 hypothetical protein T31B... 63 4e-11
TC86273 similar to SP|O80340|ERF4_ARATH Ethylene responsive elem... 63 5e-11
>TC89449 similar to GP|17473570|gb|AAL38260.1 putative protein {Arabidopsis
thaliana}, partial (2%)
Length = 904
Score = 166 bits (419), Expect(2) = 3e-44
Identities = 84/86 (97%), Positives = 85/86 (98%)
Frame = -3
Query: 1 MSGSRKSRARQRPNPLKESKLMTRKLQLVFDDPDATDVSEDESQQSRTTTKRSFFEVTLP 60
MSGSRKSRARQRPNPLKESKLMTRKLQLVFDDPDATDVSEDESQQSRTTTKRSFFEVTLP
Sbjct: 317 MSGSRKSRARQRPNPLKESKLMTRKLQLVFDDPDATDVSEDESQQSRTTTKRSFFEVTLP 138
Query: 61 PRAPAALSLTSQNSFYVKPKTVTRRK 86
PRAPAALSLTSQNSFYVK KTVTRR+
Sbjct: 137 PRAPAALSLTSQNSFYVKAKTVTRRR 60
Score = 28.5 bits (62), Expect(2) = 3e-44
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -2
Query: 80 KTVTRRKTCLSVQPQTNKKVVQ 101
K + KTCLSVQ + NKKV Q
Sbjct: 81 KDCNKEKTCLSVQLRPNKKVFQ 16
>AJ503842 similar to GP|15982737|gb| AT4g23750/F9D16_220 {Arabidopsis
thaliana}, partial (20%)
Length = 541
Score = 78.6 bits (192), Expect = 9e-16
Identities = 53/139 (38%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Frame = +3
Query: 14 NPLKESKLMTRKLQLVFDDPDATDVSEDESQQ---SRTTTKRSFFEVTLPPRAPAALSLT 70
N K+S + +++ + DPDATD S DE R KR ++ + A +S
Sbjct: 78 NNNKKSIQIPSVIRVTYTDPDATDSSSDEESNFIIPRRRIKRYVNQMEIETVASTTVSGN 257
Query: 71 SQNSFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAE 130
+ SF R+ S +P S TG KYRGVRMRPWGKWAAE
Sbjct: 258 KRKSF---------RRMKPSHRP--------AKVSAITGYER--KYRGVRMRPWGKWAAE 380
Query: 131 IRDPFRNVRIWLGTYNSAE 149
IRDP VR+WLGT+++AE
Sbjct: 381 IRDPGSKVRLWLGTFSTAE 437
>TC87696 similar to GP|9759176|dbj|BAB09791.1 contains similarity to
pathogenesis-related genes transcriptional
activator~gene_id:K19E1.9, partial (24%)
Length = 1725
Score = 76.6 bits (187), Expect = 3e-15
Identities = 52/150 (34%), Positives = 78/150 (51%), Gaps = 11/150 (7%)
Frame = +3
Query: 11 QRPNPLKESKLMTRKLQLVFDDPDATDVS---EDESQQSRTTTKRS-------FFEVTLP 60
+ P+ + K + ++++ D DATD + E +++ TTKR + P
Sbjct: 564 ENPSTKTKRKPKRKLVRIIITDHDATDSDSSGDQEREKNNQTTKRRKPKREILHINMHCP 743
Query: 61 -PRAPAALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGV 119
P + + S S +S V P+ T +K +P+ + TS T R S +RGV
Sbjct: 744 VPNSSLSFSSPSSSSSLVSPEK-THKKLNRVRRPR------KPPTSVVTRRHS--NFRGV 896
Query: 120 RMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
R RPWGKWAAEIRDP R R+WLGT+++AE
Sbjct: 897 RQRPWGKWAAEIRDPIRRKRLWLGTFSTAE 986
>TC90093 similar to PIR|T47955|T47955 hypothetical protein F15G16.20 -
Arabidopsis thaliana, partial (24%)
Length = 1005
Score = 74.7 bits (182), Expect = 1e-14
Identities = 48/132 (36%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Frame = +3
Query: 26 LQLVFDDPDATDVSEDESQQSRTTTKRSFFEVTLPPRAPAALSLTSQNSFYVKPKTVTRR 85
+++ D DATD S DE ++S TT F + + + ++P TV++
Sbjct: 438 VRITVTDNDATDCSSDE-EESYTT---HFLDRNR--------GIKFVDEIIIEPCTVSKN 581
Query: 86 KTCLSVQPQTNKKVVQTSTSPTTGRRS--------CAKYRGVRMRPWGKWAAEIRDPFRN 137
+S + + + TTG R KYRGVR RPWGKWAAEIRDP R
Sbjct: 582 NNTISNGNGNGVVSRKRNRNRTTGGRKTRAPVSIPAKKYRGVRQRPWGKWAAEIRDPARG 761
Query: 138 VRIWLGTYNSAE 149
VR+WLGT+ +AE
Sbjct: 762 VRVWLGTFQTAE 797
>AW685524 homologue to GP|15982737|gb| AT4g23750/F9D16_220 {Arabidopsis
thaliana}, partial (21%)
Length = 666
Score = 73.9 bits (180), Expect = 2e-14
Identities = 49/129 (37%), Positives = 62/129 (47%), Gaps = 3/129 (2%)
Frame = +2
Query: 24 RKLQLVFDDPDATDVSEDES---QQSRTTTKRSFFEVTLPPRAPAALSLTSQNSFYVKPK 80
R +++ DPDATD S DE Q R TKR + + A +S +
Sbjct: 242 RVVRISVTDPDATDSSSDEEGQIQTFRNRTKRYINRIEIETTTKAVVSRKRPAG-----E 406
Query: 81 TVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRI 140
T T R+ + N K K+RGVR RPWGKWAAEIRDP R VR+
Sbjct: 407 TSTVRRPA-KIPAVNNGK----------------KFRGVRQRPWGKWAAEIRDPARRVRL 535
Query: 141 WLGTYNSAE 149
WLGT+ +AE
Sbjct: 536 WLGTFETAE 562
>TC93662 similar to GP|10177219|dbj|BAB10294. contains similarity to AP2
domain transcription factor~gene_id:MPF21.9 {Arabidopsis
thaliana}, partial (31%)
Length = 555
Score = 73.6 bits (179), Expect = 3e-14
Identities = 35/76 (46%), Positives = 45/76 (59%)
Frame = +3
Query: 74 SFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRD 133
SF + KTV T + + + T+ TG R +YRGVR RPWGKWAAEIRD
Sbjct: 135 SFILFEKTVAEATTSSTSNTTQSSEAASTTNEEETGERR-RRYRGVRQRPWGKWAAEIRD 311
Query: 134 PFRNVRIWLGTYNSAE 149
P + R+WLGT+ +AE
Sbjct: 312 PHKAARVWLGTFETAE 359
>TC76517 similar to GP|11994632|dbj|BAB02769. AP2 domain transcription
factor RAP2.3 {Arabidopsis thaliana}, partial (33%)
Length = 1290
Score = 69.7 bits (169), Expect = 4e-13
Identities = 31/64 (48%), Positives = 45/64 (69%), Gaps = 1/64 (1%)
Frame = +3
Query: 87 TCLSVQPQTNKKVVQTSTSPTTGRRSCAK-YRGVRMRPWGKWAAEIRDPFRNVRIWLGTY 145
+C +V+ + + V+ T G+R+ YRG+R RPWGKWAAEIRDP + VR+WLGT+
Sbjct: 486 SCDNVEKKQSLVTVEKGKKSTGGKRARKNVYRGIRQRPWGKWAAEIRDPQQGVRVWLGTF 665
Query: 146 NSAE 149
++AE
Sbjct: 666 STAE 677
>TC90582 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_180
{Arabidopsis thaliana}, partial (29%)
Length = 979
Score = 68.9 bits (167), Expect = 7e-13
Identities = 29/40 (72%), Positives = 34/40 (84%)
Frame = +2
Query: 110 RRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+R+ KYRGVR RPWGKWAAEIRDP R VR+WLGT+ +AE
Sbjct: 323 KRAKKKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAE 442
>TC90274 similar to GP|10177219|dbj|BAB10294. contains similarity to AP2
domain transcription factor~gene_id:MPF21.9 {Arabidopsis
thaliana}, partial (32%)
Length = 750
Score = 68.6 bits (166), Expect = 9e-13
Identities = 35/90 (38%), Positives = 49/90 (53%)
Frame = +3
Query: 60 PPRAPAALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGV 119
PPR + ++ +S +TR + + + VV+ + KYRGV
Sbjct: 18 PPRNLKSPTIAESSSINRTTTRITREMGNAVYEYKRTENVVREGEAKR-------KYRGV 176
Query: 120 RMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
R RPWGKWAAEIRDPF+ R+WLGT+ +AE
Sbjct: 177 RQRPWGKWAAEIRDPFKAARVWLGTFETAE 266
>BG586667 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabidopsis
thaliana}, partial (28%)
Length = 740
Score = 68.2 bits (165), Expect = 1e-12
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +3
Query: 111 RSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
R+ KYRGVR RPWGKWAAEIRDP R VR+WLGT+ +AE
Sbjct: 114 RAKKKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAE 230
>TC76795 similar to GP|18496063|emb|CAD21849. ethylene responsive element
binding protein {Fagus sylvatica}, partial (32%)
Length = 966
Score = 67.8 bits (164), Expect = 2e-12
Identities = 27/40 (67%), Positives = 34/40 (84%)
Frame = +3
Query: 110 RRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
R+ +YRG+R RPWGKWAAEIRDP + VR+WLGT+N+AE
Sbjct: 348 RKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 467
>TC76792 similar to GP|3264767|gb|AAC24587.1| AP2 domain containing protein
{Prunus armeniaca}, partial (49%)
Length = 1729
Score = 67.8 bits (164), Expect = 2e-12
Identities = 27/40 (67%), Positives = 34/40 (84%)
Frame = +3
Query: 110 RRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
R+ +YRG+R RPWGKWAAEIRDP + VR+WLGT+N+AE
Sbjct: 510 RKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 629
>AW559374 similar to GP|17381278|gb| AT4g34410/F10M10_180 {Arabidopsis
thaliana}, partial (27%)
Length = 732
Score = 67.8 bits (164), Expect = 2e-12
Identities = 28/40 (70%), Positives = 34/40 (85%)
Frame = +3
Query: 110 RRSCAKYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
+R+ KYRGVR RPWGKWAAEIRDP R R+WLGT+++AE
Sbjct: 282 KRAKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFSTAE 401
>TC82756 similar to GP|17381278|gb|AAL36057.1 AT4g34410/F10M10_180
{Arabidopsis thaliana}, partial (35%)
Length = 630
Score = 67.4 bits (163), Expect = 2e-12
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +3
Query: 115 KYRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
KYRGVR RPWGKWAAEIRDP R VR+WLGT+ +AE
Sbjct: 261 KYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFTTAE 365
>TC86558 similar to GP|20805105|dbj|BAB92777. contains ESTs AU065506(C0784)
AU083422(C0784)~unknown protein, partial (47%)
Length = 1346
Score = 67.0 bits (162), Expect = 3e-12
Identities = 26/34 (76%), Positives = 31/34 (90%)
Frame = +1
Query: 116 YRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
YRG+R RPWGKWAAEIRDP + VR+WLGT+N+AE
Sbjct: 403 YRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAE 504
>TC87581 weakly similar to GP|4099914|gb|AAD00708.1| ethylene-responsive
element binding protein homolog {Stylosanthes hamata},
partial (21%)
Length = 1201
Score = 65.1 bits (157), Expect = 1e-11
Identities = 44/144 (30%), Positives = 69/144 (47%)
Frame = +1
Query: 4 SRKSRARQRPNPLKESKLMTRKLQLVFDDPDATDVSEDESQQSRTTTKRSFFEVTLPPRA 63
S K+ + +PN K L+++F D +ATD ES T +R E+T
Sbjct: 94 SCKTTTKTKPNNKK-------LLRVIFTDHNATD---SESSGDDETPRRVKKEIT----- 228
Query: 64 PAALSLTSQNSFYVKPKTVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRP 123
++T Q + + + S+ P K + T + G + +RGVR RP
Sbjct: 229 ----NITMQFPSLTDSQATSPSSSSCSINPTHLNKPRKRPTKNSGGSNRRSIFRGVRKRP 396
Query: 124 WGKWAAEIRDPFRNVRIWLGTYNS 147
G+W +EIRDPF+ R+WLGT+N+
Sbjct: 397 SGRWISEIRDPFQRKRLWLGTFNT 468
>BG448686 similar to GP|10177219|dbj contains similarity to AP2 domain
transcription factor~gene_id:MPF21.9 {Arabidopsis
thaliana}, partial (31%)
Length = 652
Score = 64.3 bits (155), Expect = 2e-11
Identities = 29/67 (43%), Positives = 39/67 (57%)
Frame = +3
Query: 81 TVTRRKTCLSVQPQTNKKVVQTSTSPTTGRRSCAKYRGVRMRPWGKWAAEIRDPFRNVRI 140
+V T + + + T+ TG R +YRGVR RPWGKWAAEIRDP + R+
Sbjct: 132 SVAEATTSSTSNTTQSSEAASTTNEEETGERR-RRYRGVRQRPWGKWAAEIRDPHKAARV 308
Query: 141 WLGTYNS 147
WLGT+ +
Sbjct: 309 WLGTFET 329
>BF650547 similar to GP|9758388|dbj| AP2 domain transcription factor-like
{Arabidopsis thaliana}, partial (24%)
Length = 418
Score = 63.5 bits (153), Expect = 3e-11
Identities = 25/34 (73%), Positives = 29/34 (84%)
Frame = -1
Query: 116 YRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
YRGVR RPWGKWAAEIRDP + R+WLGT+ +AE
Sbjct: 385 YRGVRQRPWGKWAAEIRDPKKGARVWLGTFETAE 284
>TC78789 homologue to PIR|T48580|T48580 hypothetical protein T31B5.150 -
Arabidopsis thaliana, partial (33%)
Length = 1112
Score = 63.2 bits (152), Expect = 4e-11
Identities = 25/34 (73%), Positives = 30/34 (87%)
Frame = +1
Query: 116 YRGVRMRPWGKWAAEIRDPFRNVRIWLGTYNSAE 149
YRGVR RPWGKWAAEIRDP + R+WLGT+++AE
Sbjct: 358 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE 459
>TC86273 similar to SP|O80340|ERF4_ARATH Ethylene responsive element binding
factor 4 (AtERF4). [Mouse-ear cress] {Arabidopsis
thaliana}, partial (43%)
Length = 1171
Score = 62.8 bits (151), Expect = 5e-11
Identities = 30/67 (44%), Positives = 45/67 (66%), Gaps = 6/67 (8%)
Frame = +3
Query: 89 LSVQPQTNKKVVQTSTSPTTGRRSCA------KYRGVRMRPWGKWAAEIRDPFRNVRIWL 142
L++ P+ N+ + T+T P + A +YRGVR RPWG++AAEIRDP + R+WL
Sbjct: 84 LTMAPRDNR-ITNTTTGPGPNPSAQAQAQKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWL 260
Query: 143 GTYNSAE 149
GT+++AE
Sbjct: 261 GTFDTAE 281
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.126 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,149,828
Number of Sequences: 36976
Number of extensions: 51203
Number of successful extensions: 459
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of query: 149
length of database: 9,014,727
effective HSP length: 87
effective length of query: 62
effective length of database: 5,797,815
effective search space: 359464530
effective search space used: 359464530
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC135796.1