BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135795.7 - phase: 0
(591 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC80729 auxin efflux carrier protein [Medicago truncatula] 729 0.0
TC91788 auxin efflux carrier protein [Medicago truncatula] 707 0.0
NP565645 NP565645|AY115840.1|AAM55301.1 auxin efflux carrier pro... 694 0.0
TC83905 auxin efflux carrier protein [Medicago truncatula] 669 0.0
TC81304 auxin efflux carrier protein [Medicago truncatula] 260 1e-69
TC88879 weakly similar to PIR|T04011|T04011 hypothetical protein... 37 0.016
BQ750901 similar to SP|Q01115|FRQ_ Frequency clock protein. {Lep... 33 0.23
TC84431 similar to GP|10176983|dbj|BAB10215. GTP-binding membran... 33 0.31
AL372330 similar to GP|21322752|dbj cold shock protein-1 {Tritic... 32 0.68
TC87144 similar to GP|21595622|gb|AAM66118.1 unknown {Arabidopsi... 32 0.89
TC88123 similar to GP|8777484|dbj|BAA97064.1 contains similarity... 31 1.5
BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycopro... 30 2.0
TC85072 similar to GP|18087573|gb|AAL58917.1 AT5g63950/MBM17_5 {... 30 2.6
BG453508 weakly similar to GP|15625407|gb| like heterochromatin ... 30 3.4
BE187592 29 4.4
TC83950 29 4.4
AW694815 similar to GP|22091415|gb putative RNA helicase {Arabid... 29 4.4
TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E... 29 5.8
TC84888 similar to GP|21322752|dbj|BAB78536. cold shock protein-... 29 5.8
BE998610 similar to GP|19701092|emb unnamed protein product {Ara... 28 7.6
>TC80729 auxin efflux carrier protein [Medicago truncatula]
Length = 2366
Score = 729 bits (1881), Expect = 0.0
Identities = 418/677 (61%), Positives = 471/677 (68%), Gaps = 86/677 (12%)
Frame = +1
Query: 1 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
MI+ DLY VLTAVVPLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFIS
Sbjct: 1 MITWHDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 180
Query: 61 TNNPYTMNYRFIAADSLQKTIILTLLFIWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPL 120
TNNPY MNYRFIAAD+LQK I+L L IW+ ++ GSLEW IT+FSLSTLPNTLVMGIPL
Sbjct: 181 TNNPYAMNYRFIAADTLQKIIMLLALTIWTNFTANGSLEWMITIFSLSTLPNTLVMGIPL 360
Query: 121 LKGMYGDDSGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIVEQFPDTAGSIISFKVDSD 180
L MYG+ SGTLMVQ+VVLQCIIWYTL+LFLFEYRGA++LI+EQFP+TA SIISFKVDSD
Sbjct: 361 LIAMYGEYSGTLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETAASIISFKVDSD 540
Query: 181 VLSLDGKEPLQTEAEVGEDGKLHVKVRKSTSSRSEIFSRRSHGVNSGVSLTPRPSNLTNA 240
V+SLDG++ L+T+AEVG+DGKLHV VRKS +SR +TPRPSNLT A
Sbjct: 541 VVSLDGRDFLETDAEVGDDGKLHVHVRKSNASRRSFM------------MTPRPSNLTGA 684
Query: 241 EIYSLQSSRNPTPRGSSFNHTDFYSMV------------------NNGRNVSPRQSNFGS 282
EIYSL SSRNPTPRGS+FNHTDFYSM+ +N R +PR SNF
Sbjct: 685 EIYSLSSSRNPTPRGSNFNHTDFYSMMGYAPRHSNFGANDVYSVQSNSRGPTPRPSNFEE 864
Query: 283 LGFDEESGVAKANG---------NGGNGYPAPH---SAGIFSPVANKKKGH--------- 321
+ N N YPAP+ S+G+ V+ + H
Sbjct: 865 NPVPTATSAQTVNSPKFGFYPAQNVPAAYPAPNPEFSSGLSKSVSKNSQQHLSQQQTQQT 1044
Query: 322 ----------GGGA-----GDGGKDLHMFVWSSSASPVSE-GGIHVF-RGGGDYGNDQLN 364
G A K+LHMFVWSSSASPVSE G+ VF G DYG +
Sbjct: 1045VQVQPQTVTSNGSAAAAKTSHDAKELHMFVWSSSASPVSEASGLQVFGSGAADYGASDQS 1224
Query: 365 GVAHQKDYE------------------------EFGHDEFSFGNR----TVANGVDKEGP 396
G + Q E E G +E F + V V K P
Sbjct: 1225GRSEQGAKEIRMLVSDDHPPNGVNITNKGMQETELGGEELKFPVKEEELLVEEEVGKVEP 1404
Query: 397 -VLSKL-GSSSTTELHPKAGSQGEAKPTNMPPASVMTRLILIMVWRKLIRNPNTYSSLIG 454
L+KL GSSST ELHP A + +MPPASVMTRLILIMVWRKLIRNPNTYSSLIG
Sbjct: 1405AALNKLGGSSSTAELHPTATVK------HMPPASVMTRLILIMVWRKLIRNPNTYSSLIG 1566
Query: 455 LTWSLVSFRWNVVMPAIVAKSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTVASFAMA 514
L WSLV+FRW+V MP I+ KSI+ILSDAGLGMAMFSLGLFMALQP++IACGN+VASFAMA
Sbjct: 1567LIWSLVAFRWHVHMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKMIACGNSVASFAMA 1746
Query: 515 VRFLTGPAVMAFSSFVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFG 574
VRFLTGPAVMA +S VGLRG LL +AIVQAALPQGIVPFVFAKEYNVHP ILSTGVIFG
Sbjct: 1747VRFLTGPAVMAAASIAVGLRGNLLRVAIVQAALPQGIVPFVFAKEYNVHPAILSTGVIFG 1926
Query: 575 MLIALPITLVYYILLGL 591
MLIALPITLVYYILLGL
Sbjct: 1927MLIALPITLVYYILLGL 1977
>TC91788 auxin efflux carrier protein [Medicago truncatula]
Length = 2076
Score = 707 bits (1825), Expect = 0.0
Identities = 388/631 (61%), Positives = 460/631 (72%), Gaps = 40/631 (6%)
Frame = +1
Query: 1 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
MI+ D+Y V A+VPLYVAMILAYGSV+WWKIFTPDQCSGINRFVA+FAVPLLSFHFIS
Sbjct: 1 MITGKDIYDVFAAIVPLYVAMILAYGSVRWWKIFTPDQCSGINRFVAVFAVPLLSFHFIS 180
Query: 61 TNNPYTMNYRFIAADSLQKTIILTLLFIWSRTS-SRGSLEWSITLFSLSTLPNTLVMGIP 119
+N+PY MNY F+AADSLQK +IL LFIW+ S ++ SL+W+ITLFSLSTLPNTLVMGIP
Sbjct: 181 SNDPYAMNYHFLAADSLQKVVILGALFIWNTFSKNQDSLDWTITLFSLSTLPNTLVMGIP 360
Query: 120 LLKGMYGDDSGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIVEQFPDTAGSIISFKVDS 179
LL+ MYGD SG LMVQIVVLQ +IWYTLMLFLFEYR A++LI EQFP+TA SI SFKVDS
Sbjct: 361 LLRAMYGDFSGNLMVQIVVLQSVIWYTLMLFLFEYRAAKLLITEQFPETAASITSFKVDS 540
Query: 180 DVLSLDGKEPLQTEAEVGEDGKLHVKVRKSTSSRSEIFSRRSHGVNSGVSLTPRPSNLTN 239
DV+SL+G+EPLQT+AE+GEDGKLHV V++ST++ S +N+ +TPR SNLT
Sbjct: 541 DVVSLNGREPLQTDAEIGEDGKLHVVVKRSTTNSMVSGSFNKSHLNN---MTPRASNLTG 711
Query: 240 AEIYSLQSSRNPTPRGSSFNHTDFYSM--------------------------VNNGRNV 273
EIYS+QSSR PTPRGSSFN TDFY+M + + +
Sbjct: 712 VEIYSVQSSREPTPRGSSFNQTDFYAMFQSKAPSPKHGYTNSFQSNGNGDIYSMQSSKGA 891
Query: 274 SPRQSNFG--SLGFDEESGVAKANG---NGGNGYPAPHS--AGIFSPVANKKKGHGGGAG 326
+PR SNF +L ++ G +G N G YP P+ +G S KK GGG+G
Sbjct: 892 TPRTSNFEDETLRMHKKRGGRSMSGELFNNGGSYPPPNPMLSGSTSAGTKKKDSMGGGSG 1071
Query: 327 DG--GKDLHMFVWSSSASPVSEGGIH--VFRGGG-DYGN-DQLNGVAHQKDYEEFGHDEF 380
+G K+LHMFVWSSSASPVSEG + V R D+G D V H+ E
Sbjct: 1072NGPNNKELHMFVWSSSASPVSEGNLRHAVNRAASTDFGTVDPSKYVPHENSVASKAVTEL 1251
Query: 381 SFGNRTVANGVDKEGPVLSKLGSSSTTELHPKAGSQGEAKPTNMPPASVMTRLILIMVWR 440
V+ E V S S +L G +K T MPPASVMTRLILIMVWR
Sbjct: 1252IENMSPRERDVEIEEAVKSPYISQKKMDLE---GGGDVSKNTQMPPASVMTRLILIMVWR 1422
Query: 441 KLIRNPNTYSSLIGLTWSLVSFRWNVVMPAIVAKSIAILSDAGLGMAMFSLGLFMALQPR 500
KLIRNPNTYSSLIGL WSLVSFR+++ MP+IV SI+ILSDAGLGMAMFSLGLFMALQP+
Sbjct: 1423KLIRNPNTYSSLIGLVWSLVSFRFHIEMPSIVKGSISILSDAGLGMAMFSLGLFMALQPK 1602
Query: 501 IIACGNTVASFAMAVRFLTGPAVMAFSSFVVGLRGVLLHIAIVQAALPQGIVPFVFAKEY 560
+IACG VA+F+MAVRFLTGPAV+A +S +G+RGVLLH+AIVQAALPQGIVPFVFAKEY
Sbjct: 1603LIACGKRVATFSMAVRFLTGPAVIAATSIAIGIRGVLLHVAIVQAALPQGIVPFVFAKEY 1782
Query: 561 NVHPDILSTGVIFGMLIALPITLVYYILLGL 591
N+HP+ILSTGVIFGMLIALPIT++YY+LLG+
Sbjct: 1783NLHPNILSTGVIFGMLIALPITILYYVLLGV 1875
>NP565645 NP565645|AY115840.1|AAM55301.1 auxin efflux carrier protein
[Medicago truncatula]
Length = 1575
Score = 694 bits (1790), Expect = 0.0
Identities = 388/606 (64%), Positives = 441/606 (72%), Gaps = 15/606 (2%)
Frame = +1
Query: 1 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
MI+ D YHV+T++VPLYVAMILAYGSVKWWKIF+PDQCSGINRFVALFAVPLLSFHFI+
Sbjct: 1 MITLTDFYHVMTSMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIA 180
Query: 61 TNNPYTMNYRFIAADSLQKTIILTLLFIWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPL 120
+NNPY MN RF+ AD+LQK I+L L IW+ S RG LEW+ITLFS+STLPNTLVMGIPL
Sbjct: 181 SNNPYKMNTRFLVADTLQKIIVLLALTIWANVSKRGCLEWTITLFSISTLPNTLVMGIPL 360
Query: 121 LKGMYGDD-SGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIVEQFPDTAGSIISFKVDS 179
LK MYG + SG+LMVQIVVLQCIIWYTL+LF+FE+RGAR+LI EQFPDTAG+I+S VDS
Sbjct: 361 LKCMYGGEFSGSLMVQIVVLQCIIWYTLILFMFEFRGARMLISEQFPDTAGTIVSIHVDS 540
Query: 180 DVLSL-DGKEPLQTEAEVGEDGKLHVKVRKSTSSRSEIFSRRSHGVNSGVSLTPRPSNLT 238
DV+SL DG++ L+TEA + EDGKLHV VR+S + SRRSH S TPR SNLT
Sbjct: 541 DVMSLDDGRQCLETEAVIKEDGKLHVIVRRSNA------SRRSH---SQSHTTPRASNLT 693
Query: 239 NAEIYSLQSSRNPTPRGSSFNHTDFYSMVNNGRNVSPRQSNFGSL----------GFDEE 288
NAEIYSLQSSRNPTPRGSSFNHTD +SM+ RN SNFG+ +D
Sbjct: 694 NAEIYSLQSSRNPTPRGSSFNHTDLHSMMGGSRN-----SNFGAFDLKGTPPRTCNYDNS 858
Query: 289 SGVAKANGNGGNGYPAPHSAGIFSP---VANKKKGHGGGAGDGGKDLHMFVWSSSASPVS 345
K N YPAP+ +FSP VA KK +DLHMF WSSS S VS
Sbjct: 859 MSTTKGN------YPAPNPE-MFSPKNVVAAKKT----------EDLHMFFWSSSDSLVS 987
Query: 346 EGGIHVFRGGGDYGNDQLNGVAHQKDYEEFGHDEFSFGNRTVANGVDKEGPVLSKLGSSS 405
+ ++V + G DE
Sbjct: 988 DVKLNV------------------SPEKVEGEDEH------------------------- 1038
Query: 406 TTELHPKAGSQGEAKPTNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWN 465
K G +G AK MPPAS+MTRLILIMVWRKLIRNPNTYSS+IGLTWSL+SFRWN
Sbjct: 1039------KRGEEGGAK--TMPPASIMTRLILIMVWRKLIRNPNTYSSIIGLTWSLISFRWN 1194
Query: 466 VVMPAIVAKSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTVASFAMAVRFLTGPAVMA 525
+ MP I+AKSI+ILSDAGLGMAMFSLGLFMALQPRIIACGN +A+F+MA+RFLTGPAVMA
Sbjct: 1195IEMPVIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNRIAAFSMAIRFLTGPAVMA 1374
Query: 526 FSSFVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY 585
+S VVGLRG LL++AIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY
Sbjct: 1375AASIVVGLRGTLLNVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVY 1554
Query: 586 YILLGL 591
YILLGL
Sbjct: 1555YILLGL 1572
>TC83905 auxin efflux carrier protein [Medicago truncatula]
Length = 1869
Score = 669 bits (1726), Expect = 0.0
Identities = 388/649 (59%), Positives = 450/649 (68%), Gaps = 58/649 (8%)
Frame = +1
Query: 1 MISALDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
MI+ DLY VLTAVVPLYVAMILAYGSV+WWKIF+PDQCSGINRFVA+FAVPLLSFHFIS
Sbjct: 1 MITLKDLYTVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAVFAVPLLSFHFIS 180
Query: 61 TNNPYTMNYRFIAADSLQKTIILTLLFIWSRTSSRGSLEWSITLFSLSTLPNTLVMGIPL 120
TNNPY MN+RFIAAD+LQK I+L L +W+ + G+LEW IT+FSLSTLPNTLVMGIPL
Sbjct: 181 TNNPYQMNFRFIAADTLQKIIMLVALSLWTLFTKNGNLEWMITIFSLSTLPNTLVMGIPL 360
Query: 121 LKGMYGDDSGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIVEQFPDTAGSIISFKVDSD 180
L MYGD SG+LMVQ+VVLQCIIWYTL+LFLFEYRGA++LI+EQFP+TA SI+SFKVDSD
Sbjct: 361 LIAMYGDYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETAASIVSFKVDSD 540
Query: 181 VLSLDGKEPLQTEAEVGEDGKLHVKVRKSTSSRSEIFSRRSHGVNSGVSLTPRPSNLTNA 240
V+SLDG++ L+T+A VG+DGKLHV VRKS +SR RS +N TPRPSNLT A
Sbjct: 541 VMSLDGRDFLETDASVGDDGKLHVTVRKSNASR------RSFMMN-----TPRPSNLTGA 687
Query: 241 EIYSLQSSRNPTPRGSSFNHTDFYSMV------------------NNGRNVSPRQSNFGS 282
EIYSL S TPRGS+FNH +FYSM+ ++ R +PR SNF
Sbjct: 688 EIYSLSS----TPRGSNFNHQEFYSMMGYQPRHSNFGANDLYSVQSSSRGPTPRPSNFEE 855
Query: 283 LGFDEES-GVAKANGNGGNGYPAPHS--AGIFSPVANKKKG--------HGGGAGDGGKD 331
G G A YP P+ + PV N+ + G K+
Sbjct: 856 NGASSPRFGFYPAAQTVPTSYPVPNPEFSSTTKPVKNQNQNLMPQQPQVQLQTKGSQDKE 1035
Query: 332 LHMFVWSSSASPVSEG-GIHVFRGG--GDYGNDQL----------NGVAHQKDYEEF--- 375
LHMFVWSSSASPVSE G++VFR + G ++ NG + K +E
Sbjct: 1036LHMFVWSSSASPVSESAGLNVFRNSEQSEEGAKEIRMVVADEHNQNGETNNKGGQEKEIG 1215
Query: 376 GHDEFSF-GNRTVANGVDKEGPVLSKLGSSSTTELHPKAGSQGEAKPTN-MPPASVMTRL 433
G ++F F G + G GP +KLGS+ST ELHPKA ++ MPPASVMTRL
Sbjct: 1216GEEDFKFNGVKVGEQGEGPNGP--NKLGSNSTPELHPKATGVADSSVGKLMPPASVMTRL 1389
Query: 434 ILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWNVVMPAIV-----------AKSIAILSDA 482
ILIMVWRKLIRNPNTYSSLIGL + +P + SDA
Sbjct: 1390ILIMVWRKLIRNPNTYSSLIGL----------I*VPCCL*VGCSYA*NNRRNQFPYCSDA 1539
Query: 483 GLGMAMFSLGLFMALQPRIIACGNTVASFAMAVRFLTGPAVMAFSSFVVGLRGVLLHIAI 542
GLGMAMFSLGLFMALQP+IIACGN+VASFAMA+RFLTGPAVMA +S VGLRG LLH+AI
Sbjct: 1540GLGMAMFSLGLFMALQPKIIACGNSVASFAMAIRFLTGPAVMAAASIAVGLRGTLLHVAI 1719
Query: 543 VQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 591
VQAALPQGIVPFVFAKEYNVHP ILST VIFGMLIALPITL+YYILLGL
Sbjct: 1720VQAALPQGIVPFVFAKEYNVHPAILSTAVIFGMLIALPITLLYYILLGL 1866
>TC81304 auxin efflux carrier protein [Medicago truncatula]
Length = 831
Score = 260 bits (664), Expect = 1e-69
Identities = 128/148 (86%), Positives = 142/148 (95%)
Frame = +3
Query: 444 RNPNTYSSLIGLTWSLVSFRWNVVMPAIVAKSIAILSDAGLGMAMFSLGLFMALQPRIIA 503
RNPNTYSSLIGLTWSLVSFR+++ MPAI+AKSI+ILSDAGLGMAMFSLGLFMALQP+IIA
Sbjct: 3 RNPNTYSSLIGLTWSLVSFRYHIEMPAIIAKSISILSDAGLGMAMFSLGLFMALQPKIIA 182
Query: 504 CGNTVASFAMAVRFLTGPAVMAFSSFVVGLRGVLLHIAIVQAALPQGIVPFVFAKEYNVH 563
CGN++A+F+M VRFL GPAVMA +SF VGL+GVL H+AIVQAALPQGIVPFVFAKEYNVH
Sbjct: 183 CGNSIAAFSMGVRFLVGPAVMAAASFAVGLKGVLFHVAIVQAALPQGIVPFVFAKEYNVH 362
Query: 564 PDILSTGVIFGMLIALPITLVYYILLGL 591
PDILSTGVIFGMLIALPITLVYYIL+GL
Sbjct: 363 PDILSTGVIFGMLIALPITLVYYILMGL 446
>TC88879 weakly similar to PIR|T04011|T04011 hypothetical protein T5L19.200
- Arabidopsis thaliana, partial (6%)
Length = 1573
Score = 37.4 bits (85), Expect = 0.016
Identities = 44/179 (24%), Positives = 60/179 (32%), Gaps = 1/179 (0%)
Frame = +3
Query: 244 SLQSSRNPTPRGSSFNHTDFYSMVNNGRNVSPRQSNFGSLGFDEESGVAKANGNGGNGYP 303
S S P P G+ H S +G P QS G + G G G+
Sbjct: 273 SHNQSYAPPPYGNYPQHMAPRSSYGSGWEQRPHQSFQGPPSHN--GGYDYYGGQSGHSSE 446
Query: 304 APHSAGIFSPVANKKKGHGGGAGDGGKDLHMFVWSSSASPVSEGGIHVFRGGGDYGNDQL 363
AP SA S V HG G SP+ G +YG Q
Sbjct: 447 APSSAQHPSSVPQ----HGTGP----------------SPLPSMGPSPAXMNYNYGQPQG 566
Query: 364 NGVAHQKDYEEFGHDEFSFGNRTVANGVDKEGPVLSKLGSSSTTE-LHPKAGSQGEAKP 421
HQ Y++ GH + +G + + GP G S + +P+A +Q P
Sbjct: 567 QDYGHQTPYQQAGHPQQGYGQGYDESKYENRGPAQYPYGGHSNPQPTYPQASAQANYAP 743
>BQ750901 similar to SP|Q01115|FRQ_ Frequency clock protein. {Leptosphaeria
australiensis}, partial (15%)
Length = 743
Score = 33.5 bits (75), Expect = 0.23
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 283 LGFDEESGVAKANGNGGNGYPAPHSAG 309
+GFDE+ G+AK NG+ N + P S G
Sbjct: 35 IGFDEKKGMAKDNGSSSNSHEQPDSGG 115
>TC84431 similar to GP|10176983|dbj|BAB10215. GTP-binding membrane protein
LepA homolog {Arabidopsis thaliana}, partial (46%)
Length = 976
Score = 33.1 bits (74), Expect = 0.31
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Frame = +3
Query: 523 VMAFSSFVVGLRGVLLHIAIVQAALPQG--IVPFVFAKEYN------VHPDILSTGVIFG 574
++ S+ RGV+ H+A+V AL +G I K Y +HP++ TG++F
Sbjct: 558 MLLLDSYFDEYRGVICHVAVVDGALRKGDKISSAATGKSYEAMDIGIMHPELTPTGILFT 737
Query: 575 MLIALPIT 582
+ IT
Sbjct: 738 GQVGYVIT 761
>AL372330 similar to GP|21322752|dbj cold shock protein-1 {Triticum
aestivum}, partial (33%)
Length = 435
Score = 32.0 bits (71), Expect = 0.68
Identities = 29/113 (25%), Positives = 39/113 (33%), Gaps = 8/113 (7%)
Frame = +2
Query: 275 PRQSNFGSLGFDEESGVAKANGN--------GGNGYPAPHSAGIFSPVANKKKGHGGGAG 326
P S+ G G G ++G GG GY S G G GGG G
Sbjct: 80 PASSSGGGYGGGSSGGYGGSSGGYGGSSGGYGGGGYGGGASGGYGG--GGYGGGSGGGYG 253
Query: 327 DGGKDLHMFVWSSSASPVSEGGIHVFRGGGDYGNDQLNGVAHQKDYEEFGHDE 379
GG GG + GGG YG D++ + +++G E
Sbjct: 254 GGGYG---------------GGGYGGGGGGGYGGDKMGALGANLQKQDWGRIE 367
>TC87144 similar to GP|21595622|gb|AAM66118.1 unknown {Arabidopsis
thaliana}, partial (52%)
Length = 994
Score = 31.6 bits (70), Expect = 0.89
Identities = 42/180 (23%), Positives = 59/180 (32%), Gaps = 4/180 (2%)
Frame = +3
Query: 205 KVRKSTSSRSEIFSRRSHGVNSGVSLTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFY 264
K S+ +FS +HG+ G P Y P P G +
Sbjct: 126 KDNNDESADKGVFSHLAHGLGGGHGYPPGA--------YPPPPGAYPPPPGHGY------ 263
Query: 265 SMVNNGRNVSPRQSNFGSLGFDEESGVAKAN-GNGGN---GYPAPHSAGIFSPVANKKKG 320
P Q + G+ G A +GG GYP G +P A G
Sbjct: 264 ---------PPHQGGYPPAGYPPPGGYPPAGYAHGGYPPAGYPPHGYPGPSAPHAPGPYG 416
Query: 321 HGGGAGDGGKDLHMFVWSSSASPVSEGGIHVFRGGGDYGNDQLNGVAHQKDYEEFGHDEF 380
H G GG + +++A G HV G YG+ G H + +F H +F
Sbjct: 417 HAGHGAMGGGIGGLIAGAAAA----YGAHHV--AHGHYGH---GGYGHMPHHGKFKHGKF 569
>TC88123 similar to GP|8777484|dbj|BAA97064.1 contains similarity to
RNA-binding protein~gene_id:K15M2.15 {Arabidopsis
thaliana}, partial (11%)
Length = 815
Score = 30.8 bits (68), Expect = 1.5
Identities = 31/105 (29%), Positives = 39/105 (36%), Gaps = 9/105 (8%)
Frame = +1
Query: 282 SLGFDEESGVAKANGNGGN---GYPAPHSAGIFSPVANKKKGHGGGAGDGGKDLHMFVWS 338
S+G S + A G GG GY P +AG G+GGG+G G
Sbjct: 31 SVGNQAPSSIGGAGGYGGGHYGGYSGPTAAGYGGSGGGGGGGYGGGSGVTGPG------- 189
Query: 339 SSASPVSEGGIHVFRGG-GDYGNDQL-----NGVAHQKDYEEFGH 377
V GG H GG G +G L +G Y + GH
Sbjct: 190 -----VGAGGGHGSAGGSGGHGLASLYRLPSSGGMQAGGYPDSGH 309
Score = 30.4 bits (67), Expect = 2.0
Identities = 23/84 (27%), Positives = 29/84 (34%)
Frame = +1
Query: 284 GFDEESGVAKANGNGGNGYPAPHSAGIFSPVANKKKGHGGGAGDGGKDLHMFVWSSSASP 343
G A ++ G GY H G P A G GGG G G S
Sbjct: 22 GLSSVGNQAPSSIGGAGGYGGGHYGGYSGPTAAGYGGSGGGGGGG---------YGGGSG 174
Query: 344 VSEGGIHVFRGGGDYGNDQLNGVA 367
V+ G+ G G G +G+A
Sbjct: 175 VTGPGVGAGGGHGSAGGSGGHGLA 246
>BQ144482 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
{Volvox carteri f. nagariensis}, partial (16%)
Length = 993
Score = 30.4 bits (67), Expect = 2.0
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Frame = -2
Query: 289 SGVAKANGNGGNG-YPAPHSAGIFSPVANKKKGHGGGAGDGGK 330
+G +A G GG G P + G + + +G GGG G GG+
Sbjct: 380 AGRGRAGGRGGGGGRGGPGAGGAKAGAKERLRGGGGGGGGGGR 252
>TC85072 similar to GP|18087573|gb|AAL58917.1 AT5g63950/MBM17_5 {Arabidopsis
thaliana}, partial (1%)
Length = 724
Score = 30.0 bits (66), Expect = 2.6
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 53 LLSFHFISTNNPYTMNYRFIAADSLQK-TIILTLLFIWSRTSSRGSLEWSITLFSLSTLP 111
L+SFHF + +N + +R I A K + I+T+ F + I+L L+ LP
Sbjct: 154 LISFHFQTKHN--VLQWRRIRASKNPKASTIVTIAF------------FKISLLLLNPLP 291
Query: 112 NTLVMGIPLLKGMYGDDSGTLMVQIVVL 139
N L M L + TLM+ +++L
Sbjct: 292 NPLTMNSILRFNLETSSIKTLMMMMMIL 375
>BG453508 weakly similar to GP|15625407|gb| like heterochromatin protein LHP1
{Arabidopsis thaliana}, partial (12%)
Length = 589
Score = 29.6 bits (65), Expect = 3.4
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +2
Query: 272 NVSPRQSNFGSLGFDEESGVAKANGNGGNGYPAPHSAGIFSPVANKKKGHGGGAGDGGKD 331
N + ++ G G ++ + + N G+ +G GHG G GDGGKD
Sbjct: 158 NKNKTHNHLGEEGMNKTTTLVAPNDVPAGGFEVGEGSG---------GGHGNGGGDGGKD 310
>BE187592
Length = 686
Score = 29.3 bits (64), Expect = 4.4
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Frame = +2
Query: 63 NPYTMNYRFIAADSLQKTIILTLLFIWSRT---SSRGSLEWSITLFSLSTLPNTLVMGI- 118
N ++NY+ I + + TII+T+ F++S + LE+S + L + LV+
Sbjct: 347 NYRSLNYKTIHSFTYY*TIIITVFFLFSLAN*LNINK*LEFSWVIACLENPGSWLVLSAR 526
Query: 119 -PLLKGMYG--DDSGTLMVQIVVLQCIIWYTLMLFLFEYRGARILIV 162
LLKG G G+ +LQC ++ L F Y LI+
Sbjct: 527 RQLLKGTAGKMHAQGSFYFVTFLLQCQLFRXFFLHFFCYHFFPSLII 667
>TC83950
Length = 688
Score = 29.3 bits (64), Expect = 4.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 240 AEIYSLQSSRNPTPRGSSFNHTDFYSMVNNGRNVSPRQSNFGSLG 284
A+ ++L S +P P SS NH D +S + + S RQS+F S G
Sbjct: 177 AKPFTLNRSSSPKPSSSSENHDDPFSSLLD----SFRQSSFSSKG 299
>AW694815 similar to GP|22091415|gb putative RNA helicase {Arabidopsis
thaliana}, partial (16%)
Length = 404
Score = 29.3 bits (64), Expect = 4.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 31 WKIFTPDQCSGINRFVAL 48
WKI TP QC+G N+++ L
Sbjct: 233 WKIHTPSQCAGTNQYLNL 180
>TC86766 weakly similar to PIR|T06291|T06291 extensin homolog T9E8.80 -
Arabidopsis thaliana, partial (18%)
Length = 1260
Score = 28.9 bits (63), Expect = 5.8
Identities = 21/68 (30%), Positives = 28/68 (40%), Gaps = 4/68 (5%)
Frame = -1
Query: 296 GNGGNGYPAPHSAGIFSPVANKKKGHGGGAGD----GGKDLHMFVWSSSASPVSEGGIHV 351
G GG+ Y P + GI GGG GD GG + + + +GG V
Sbjct: 582 GGGGDAYEIPKTGGIGPSYT------GGGGGDEYTGGGGEGYAYT--------GDGGGEV 445
Query: 352 FRGGGDYG 359
+ GGG G
Sbjct: 444 YTGGGGEG 421
>TC84888 similar to GP|21322752|dbj|BAB78536. cold shock protein-1 {Triticum
aestivum}, partial (58%)
Length = 612
Score = 28.9 bits (63), Expect = 5.8
Identities = 21/79 (26%), Positives = 26/79 (32%)
Frame = +2
Query: 287 EESGVAKANGNGGNGYPAPHSAGIFSPVANKKKGHGGGAGDGGKDLHMFVWSSSASPVSE 346
+E G G GG GY + G + G GGG G G +
Sbjct: 290 QEMGYGGGGGRGGGGYGGGYDQGYGGGGGSYGGGFGGGRGGG----------RGGGGYXQ 439
Query: 347 GGIHVFRGGGDYGNDQLNG 365
GG + GGG Y G
Sbjct: 440 GG---YGGGGGYXQGGYGG 487
>BE998610 similar to GP|19701092|emb unnamed protein product {Arabidopsis
thaliana}, partial (20%)
Length = 480
Score = 28.5 bits (62), Expect = 7.6
Identities = 15/38 (39%), Positives = 21/38 (54%)
Frame = +1
Query: 144 WYTLMLFLFEYRGARILIVEQFPDTAGSIISFKVDSDV 181
W +M F F YRGA+ + PD +I SF +D+ V
Sbjct: 169 WSKIMAF-FYYRGAKPSCLTNIPDFQENIPSFTIDNPV 279
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.321 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,573,688
Number of Sequences: 36976
Number of extensions: 272568
Number of successful extensions: 1664
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of query: 591
length of database: 9,014,727
effective HSP length: 102
effective length of query: 489
effective length of database: 5,243,175
effective search space: 2563912575
effective search space used: 2563912575
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC135795.7