BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135795.3 + phase: 0
(134 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BE205344 similar to PIR|T00649|T0 hypothetical protein F3I6.12 -... 73 3e-14
AW775273 similar to PIR|T51447|T5 transcription regulator-like p... 65 8e-12
BF648188 similar to GP|21903805|gb| hypothetical protein {Strept... 54 2e-08
AW693766 similar to GP|16611746|gb| putative glycosyl transferas... 42 6e-05
TC78177 similar to PIR|T07145|T07145 epoxide hydrolase homolog -... 27 1.8
BQ138982 similar to GP|10177202|dbj emb|CAB71880.1~gene_id:MVP7.... 27 2.4
TC90417 25 7.0
TC90476 similar to PIR|A96785|A96785 Putative ubiquitin-conjugat... 25 7.0
TC82170 similar to GP|12322019|gb|AAG51057.1 unknown protein; 38... 25 7.0
TC90265 weakly similar to GP|9294666|dbj|BAB03015.1 gene_id:F14O... 25 9.1
AL387173 25 9.1
>BE205344 similar to PIR|T00649|T0 hypothetical protein F3I6.12 - Arabidopsis
thaliana, partial (8%)
Length = 559
Score = 73.2 bits (178), Expect = 3e-14
Identities = 38/88 (43%), Positives = 55/88 (62%)
Frame = +2
Query: 27 DALAFVKGVEVEFEDKGDKYDEFLNVMNDFKTLRIDAEGAKARLDELFKEHRHLIMRFNS 86
DALA++K V+ F+DK +KY++FL VM DFK R+D +G R+ ELF+ HR LI+ FN+
Sbjct: 248 DALAYLKAVKDIFQDKKEKYEDFLEVMKDFKAQRVDTDGVIERVKELFRGHRDLILGFNT 427
Query: 87 LTLKGSHFTKHGYETEEEEDMEILDKLE 114
KG T + E+E + K+E
Sbjct: 428 FLPKGHEITL----SSEDEQPQPKKKVE 499
>AW775273 similar to PIR|T51447|T5 transcription regulator-like protein -
Arabidopsis thaliana, partial (11%)
Length = 689
Score = 65.1 bits (157), Expect = 8e-12
Identities = 34/87 (39%), Positives = 49/87 (56%)
Frame = +1
Query: 27 DALAFVKGVEVEFEDKGDKYDEFLNVMNDFKTLRIDAEGAKARLDELFKEHRHLIMRFNS 86
DAL+++K V+ F D+ +KYD FL VM DFK + D G A + ELFK H +LI FN+
Sbjct: 169 DALSYLKEVKNTFPDQKEKYDMFLQVMKDFKAQKTDTHGVIAAVKELFKGHNNLIYGFNA 348
Query: 87 LTLKGSHFTKHGYETEEEEDMEILDKL 113
KG E +++ +E D +
Sbjct: 349 YLPKGHEIRLDEDEASQKKKVEFEDAI 429
>BF648188 similar to GP|21903805|gb| hypothetical protein {Streptococcus
pyogenes MGAS315}, partial (17%)
Length = 627
Score = 53.5 bits (127), Expect = 2e-08
Identities = 28/64 (43%), Positives = 40/64 (61%)
Frame = +3
Query: 27 DALAFVKGVEVEFEDKGDKYDEFLNVMNDFKTLRIDAEGAKARLDELFKEHRHLIMRFNS 86
DA A+ V+ ++K Y EF VM+D++ RID G KAR+ ELFK H+HLI+ N+
Sbjct: 216 DACAYDNAVKSTCQEK---YSEFAEVMSDYRDGRIDPGGVKARVHELFKGHKHLILGINN 386
Query: 87 LTLK 90
+ K
Sbjct: 387 IMPK 398
Score = 47.0 bits (110), Expect = 2e-06
Identities = 26/60 (43%), Positives = 36/60 (59%)
Frame = +3
Query: 26 KDALAFVKGVEVEFEDKGDKYDEFLNVMNDFKTLRIDAEGAKARLDELFKEHRHLIMRFN 85
+DA F+K V+V F+DK +KY EFL V++D+ L ID +LFK H L+ FN
Sbjct: 444 QDATTFLKQVKVVFQDKMEKYYEFLQVIHDYMNLTIDILDVIEIGMKLFKGHVDLLSGFN 623
>AW693766 similar to GP|16611746|gb| putative glycosyl transferase {Shigella
boydii}, partial (5%)
Length = 656
Score = 42.4 bits (98), Expect = 6e-05
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Frame = +1
Query: 29 LAFVKGVEVEFEDKGDKYDEFLNVMNDFKTL-------RIDAEGAKARLDELFKEHRHLI 81
L FV+ V+ F K ++Y+EF+ ++ FKTL R+ + K R+ +L K H LI
Sbjct: 55 LGFVEEVKSVFHGKREEYEEFIKDIDAFKTLMNDHRITRLPVQNFKGRMKKLLKGHNRLI 234
Query: 82 MRFNS 86
FN+
Sbjct: 235 FGFNA 249
>TC78177 similar to PIR|T07145|T07145 epoxide hydrolase homolog - soybean,
partial (89%)
Length = 1037
Score = 27.3 bits (59), Expect = 1.8
Identities = 13/44 (29%), Positives = 26/44 (58%)
Frame = -1
Query: 46 YDEFLNVMNDFKTLRIDAEGAKARLDELFKEHRHLIMRFNSLTL 89
+DEF+NV+ DF + E + + L+ F + RH+ + +S+ +
Sbjct: 980 HDEFVNVITDFLFSFLIVEVSNSFLNNHFFQIRHIFLEPSSMDI 849
>BQ138982 similar to GP|10177202|dbj emb|CAB71880.1~gene_id:MVP7.3~similar to
unknown protein {Arabidopsis thaliana}, partial (3%)
Length = 674
Score = 26.9 bits (58), Expect = 2.4
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 43 GDKYDEFLNVMNDFKTLRIDAEGAKARLDELFKEHRHLI 81
G++YDE +N KTLR EG K +++F++ +++
Sbjct: 228 GEEYDENPRTLNVVKTLRERREGGK---EKIFRKRGNIV 121
>TC90417
Length = 625
Score = 25.4 bits (54), Expect = 7.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 75 KEHRHLIMRFNSLTLKGSHFTKHGY 99
K RHL + + SL ++ +H + +GY
Sbjct: 255 KSKRHLKLFYKSLAIEKTHLSSYGY 181
>TC90476 similar to PIR|A96785|A96785 Putative ubiquitin-conjugating enzyme
[imported] - Arabidopsis thaliana, complete
Length = 764
Score = 25.4 bits (54), Expect = 7.0
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 12/57 (21%)
Frame = -2
Query: 71 DELFKEHRHLIMRFNSLTLK--GSHFTK----------HGYETEEEEDMEILDKLEK 115
D + + R + + FN L LK G + T+ HG+ +EEE+ D+ EK
Sbjct: 199 DFVVETSRRINLPFNELFLKPIGGNLTEILARRS*GASHGFREDEEEEENDFDRREK 29
>TC82170 similar to GP|12322019|gb|AAG51057.1 unknown protein; 38990-36982
{Arabidopsis thaliana}, partial (11%)
Length = 501
Score = 25.4 bits (54), Expect = 7.0
Identities = 14/41 (34%), Positives = 23/41 (55%)
Frame = +3
Query: 10 LAMKEYGYAHQNQQSMKDALAFVKGVEVEFEDKGDKYDEFL 50
L MK+Y Y +QNQ + L + +EV ++ +G Y F+
Sbjct: 192 LLMKQYQYRNQNQNQNQH*LK-DETIEVNYQTQGHIYTIFI 311
>TC90265 weakly similar to GP|9294666|dbj|BAB03015.1
gene_id:F14O13.16~pir||T05437~similar to unknown protein
{Arabidopsis thaliana}, partial (6%)
Length = 1373
Score = 25.0 bits (53), Expect = 9.1
Identities = 13/31 (41%), Positives = 17/31 (53%)
Frame = -3
Query: 97 HGYETEEEEDMEILDKLEKLESALQLILEIL 127
HG+ EE + LDKLE+ L+ L IL
Sbjct: 555 HGHSQTHEEQYQTLDKLEQPRGGLEE*L*IL 463
>AL387173
Length = 436
Score = 25.0 bits (53), Expect = 9.1
Identities = 16/58 (27%), Positives = 28/58 (47%), Gaps = 5/58 (8%)
Frame = +1
Query: 54 NDFKTLRIDAEGAKA-----RLDELFKEHRHLIMRFNSLTLKGSHFTKHGYETEEEED 106
+ +TL ++ + K+ ++ E FKE++ I +N L L T H Y + E D
Sbjct: 88 SSLETLIVECKSLKSVVFPSKVTEQFKENKKRIEFWNCLNLDERSVTTHKYLSALEHD 261
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.136 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,900,491
Number of Sequences: 36976
Number of extensions: 28980
Number of successful extensions: 203
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of query: 134
length of database: 9,014,727
effective HSP length: 86
effective length of query: 48
effective length of database: 5,834,791
effective search space: 280069968
effective search space used: 280069968
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC135795.3