BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135604.8 + phase: 0 /pseudo
(1050 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imp... 284 5e-80
CB893203 156 3e-39
BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-li... 151 1e-36
BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgari... 140 3e-33
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 139 6e-33
BE248682 similar to GP|18568269|gb putative gag-pol polyprotein ... 128 1e-29
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo... 127 2e-29
CA919100 homologue to PIR|G90291|G902 endoglucanase precursor [i... 117 2e-26
AW686588 104 2e-22
BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At... 99 7e-21
TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR re... 84 2e-16
BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - ... 81 2e-15
AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase... 78 2e-14
TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarot... 70 3e-12
BE999296 67 4e-11
BG647708 weakly similar to GP|13786450|gb| putative reverse tran... 66 6e-11
BF650593 66 6e-11
TC82520 63 2e-10
BE941032 64 4e-10
BF520135 62 1e-09
>TC83437 weakly similar to PIR|D86384|D86384 unknown protein [imported] -
Arabidopsis thaliana, partial (6%)
Length = 951
Score = 284 bits (727), Expect(2) = 5e-80
Identities = 167/284 (58%), Positives = 195/284 (67%), Gaps = 2/284 (0%)
Frame = +2
Query: 346 RFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQV 405
RFV+EFHRN KL KGINSTFIALIPKV +PQ LN+FRPISLVGS+YKIL K+LANRLR V
Sbjct: 5 RFVSEFHRNRKLFKGINSTFIALIPKVDNPQRLNDFRPISLVGSLYKILGKLLANRLRVV 184
Query: 406 IGSVVSEAQSAFVKNRQILDGILI-AN*VVDEARKLKKYLLLFKVDFAKAYDSVDWGYLD 464
IGSV+S+AQSAFVKNRQIL+ + + + R +K + K ++ G +
Sbjct: 185 IGSVISDAQSAFVKNRQILEMVFL*QMRLWMRLRN*RKIFCCLRW-ILKRLITLSIGLIW 361
Query: 465 EVM-GSMSFPVVWRKWIKECVGTATASVLVNGSPTDEFHLERGLRQGDPLSPFLFLLAA* 523
+ MSF V+WRKWIKECV TAT SVLVNGSPT
Sbjct: 362 ILF*VGMSFLVLWRKWIKECVSTATTSVLVNGSPT------------------------- 466
Query: 524 GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLIGNKSWANVRALRAGLVMFEA 583
NVLMK+LV +FT Y G + VVVSHLQFA+DTLL+ K+WAN+RALRA LV+F A
Sbjct: 467 --NVLMKSLVQTQLFTRYSFGVVNPVVVSHLQFANDTLLLETKNWANIRALRAALVIF*A 640
Query: 584 MSGLKVNFHKSSLVGVNINDSWLSEAASVLGCKVVKIPFLYLGL 627
MSGLKVNFHKS LV VNI SWLSEAASVL KV K+PFLYLG+
Sbjct: 641 MSGLKVNFHKSGLVCVNIAPSWLSEAASVLSWKVGKVPFLYLGM 772
Score = 33.5 bits (75), Expect(2) = 5e-80
Identities = 21/55 (38%), Positives = 27/55 (48%)
Frame = +1
Query: 629 RG*STSTFVLGTCCESY*I*IVWLAKSVPFFRWSFDSSKVRPDCSTCLCTFLFQS 683
RG ++ LGT CES+ *+ WL S F S KV D CLC F++
Sbjct: 778 RGKFSALEFLGTYCESHKS*VDWLE*SFFIFWRPSSSVKVGSDLFVCLCASFFKA 942
>CB893203
Length = 800
Score = 156 bits (394), Expect(2) = 3e-39
Identities = 71/131 (54%), Positives = 95/131 (72%)
Frame = -3
Query: 71 LSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWGPRPVRLLKCWQDMPGYIDFIREK 130
+S WC+ WPN IQ A RGLSD CPI+L++DE NWGPR +LKCW D+PGY F+++K
Sbjct: 798 VSESWCIKWPNMIQRALFRGLSDRCPIMLTIDEGNWGPRLHHMLKCWADLPGYHLFVKDK 619
Query: 131 WVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKIAELKI*QASLDSKGEEEQLS 190
W FQVS WGG+VLKEK K+++ LKDWH +T NL ++I +++ A LDSKGE+ L
Sbjct: 618 WNSFQVSRWGGYVLKEK*KMVRNNLKDWHHNHTRNLDARINDIRESIAYLDSKGEDLTLD 439
Query: 191 EEELGELHGIS 201
EE+ +LH +S
Sbjct: 438 TEEVDDLHTLS 406
Score = 25.0 bits (53), Expect(2) = 3e-39
Identities = 11/16 (68%), Positives = 14/16 (86%)
Frame = -1
Query: 206 SLSRLITSICWQQSRL 221
SLS+L TSI WQ+SR+
Sbjct: 392 SLSKLNTSIQWQKSRI 345
>BG586266 similar to GP|7267666|em RNA-directed DNA polymerase-like protein
{Arabidopsis thaliana}, partial (18%)
Length = 789
Score = 151 bits (382), Expect = 1e-36
Identities = 84/222 (37%), Positives = 132/222 (58%), Gaps = 3/222 (1%)
Frame = -3
Query: 378 LNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKNRQILDGILIAN*VVDEA 437
++E+R I+ + YKI+AKIL+ R++ ++ S++S +QSAFV R I D +LI + ++
Sbjct: 778 VSEYRTIAPCNTQYKIIAKILSKRMQPLLRSIISPSQSAFVPGRAISDNVLITHKILHYL 599
Query: 438 RK--LKKYL-LLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKWIKECVGTATASVLVN 494
R+ KK++ + K D KAYD + W +L EV+ + F +W WI ECV T + S L+N
Sbjct: 598 RQSGAKKHVSMAVKTDMTKAYDRIAWNFLREVLTRLGFHGIWISWIMECVSTVSYSFLIN 419
Query: 495 GSPTDEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHL 554
G P RGLRQGDPLSP+LF+L L+ L + + G G +V R + ++HL
Sbjct: 418 GGPQGRVLPSRGLRQGDPLSPYLFILCTEVLSGLCQQALRKGTLPGVKVAR-NCPPINHL 242
Query: 555 QFADDTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSL 596
FADDT+ G + ++ L + + + A SG +N KS++
Sbjct: 241 LFADDTMFFGKSNASSCAILLSIMDKYRAASGRCIN*TKSAI 116
>BF650289 weakly similar to GP|9049283|dbj| orf129a {Beta vulgaris}, partial
(69%)
Length = 616
Score = 140 bits (352), Expect = 3e-33
Identities = 75/199 (37%), Positives = 118/199 (58%), Gaps = 1/199 (0%)
Frame = +3
Query: 301 LTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLAKG 360
L F+ E+K A++ DS K+PG DG N+ FFK W I ++ + +F + G + K
Sbjct: 12 LCSEFTAVEVKNALFSMDSSKAPGIDGYNVHFFKCSWNIIGDSVIDAILDFFKTGFMPKI 191
Query: 361 INSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQSAFVKN 420
IN T++ L+PK + S+ FRPI+ +YKI++KIL +R++ V+ SVVSE QSAFVK
Sbjct: 192 INCTYVTLLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKG 371
Query: 421 RQILDGILIAN*VVDE-ARKLKKYLLLFKVDFAKAYDSVDWGYLDEVMGSMSFPVVWRKW 479
R I D I++++ +V +RK + K+D KAYDS +W ++ +M + FP + W
Sbjct: 372 RVIFDNIILSHELVKSYSRKGISPRCMVKIDLXKAYDSXEWPFIKHLMLELGFPYKFVNW 551
Query: 480 IKECVGTATASVLVNGSPT 498
+ + TA+ + NG T
Sbjct: 552 VMAXLTTASYTFNXNGDLT 608
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 139 bits (350), Expect = 6e-33
Identities = 67/145 (46%), Positives = 88/145 (60%)
Frame = +2
Query: 855 GEALRWRRRLWAREEELVEECRALLLTVSLQESVTDRWLWVPNHDDGYSVRGVYDMLTSQ 914
G A W RRL+ EEE V EC LL LQ++V D+W W+ + +GYSV+ Y +TS
Sbjct: 413 GRAWEWTRRLFVWEEECVRECCILLNNFVLQDNVNDKWRWLLDPVNGYSVKVFYRYITST 592
Query: 915 EQPQLHHNMELIWHK*VPLKVSILAWRLLRDRLPTKSNLANRGILALEARLCVSGCGNVE 974
++ +WHK +P KVS+ WRLLR+RLPTK NL +RG+L CV GC + E
Sbjct: 593 GHISDRSLVDDVWHKHIPSKVSLFVWRLLRNRLPTKDNLVHRGVLLATNAACVCGCVDSE 772
Query: 975 DVNHLFLSCVTFSALWPMVRAWLGV 999
HLFL C F +LW +VR WLG+
Sbjct: 773 STTHLFLHCNVFCSLWSLVRNWLGI 847
>BE248682 similar to GP|18568269|gb putative gag-pol polyprotein {Zea mays},
partial (1%)
Length = 441
Score = 128 bits (321), Expect = 1e-29
Identities = 68/132 (51%), Positives = 90/132 (67%)
Frame = +3
Query: 499 DEFHLERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFAD 558
+E ++RGL+QGDPL+PFLFLL A G++ LMK V+ +F G+ V R + V SHLQ+AD
Sbjct: 6 EEISVQRGLKQGDPLAPFLFLLVAEGISGLMKNAVNRNLFQGFDVKRGGTRV-SHLQYAD 182
Query: 559 DTLLIGNKSWANVRALRAGLVMFEAMSGLKVNFHKSSLVGVNINDSWLSEAASVLGCKVV 618
DTL IG + N+ L+A L FE SGLKVNFHKSSL+G+N+ ++ A L C+
Sbjct: 183 DTLCIGMPTVDNLWTLKALLQGFEMASGLKVNFHKSSLIGINVPRDFMEAACRFLNCREE 362
Query: 619 KIPFLYLGLSRG 630
IPF+YLGL G
Sbjct: 363 SIPFIYLGLPGG 398
>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
Arabidopsis thaliana, partial (7%)
Length = 687
Score = 127 bits (319), Expect = 2e-29
Identities = 72/210 (34%), Positives = 115/210 (54%), Gaps = 2/210 (0%)
Frame = +2
Query: 223 WLRDGDANSKFFHSVLAARRRLNSLSSILVD-GVVVEGVQPFRQAVFTHFKNHFLDPRLE 281
WL+DGD N+KFFHS + RR++N + + + G +G + + + T+F N F
Sbjct: 5 WLKDGDKNTKFFHSKASQRRKVNEIKKLKDETGNWCKGEENVERLLITYFNNLFTSSNPT 184
Query: 282 R-PGVGHLQFRKLSYLERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEI 340
+ KLS+ K F+E+E+ A+ K+PGPDG+ FF+ +W +
Sbjct: 185 AIEETCEVVKGKLSHEHIVWCEKEFTEEEVLEAINQMHPVKAPGPDGLPALFFQKYWHIV 364
Query: 341 KTDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILAN 400
++ + V + N + +N TFI LIPK +P + ++RPISL + KI+ K++AN
Sbjct: 365 GKEVQQMVLQVLNNSMETEELNKTFIVLIPKGKNPNTPKDYRPISLCNVVMKIITKVIAN 544
Query: 401 RLRQVIGSVVSEAQSAFVKNRQILDGILIA 430
R++Q + V+ QSAFV+ R I D LIA
Sbjct: 545 RVKQTLPDVIDVEQSAFVQGRLITDNALIA 634
>CA919100 homologue to PIR|G90291|G902 endoglucanase precursor [imported] -
Sulfolobus solfataricus, partial (3%)
Length = 789
Score = 117 bits (292), Expect(2) = 2e-26
Identities = 52/78 (66%), Positives = 62/78 (78%)
Frame = -2
Query: 924 ELIWHK*VPLKVSILAWRLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSC 983
E+IWH+ VPLKVS+ AWRLLRDRLPTKSNL RG++ EA LCVSGCG +E HLFLSC
Sbjct: 590 EMIWHRQVPLKVSVFAWRLLRDRLPTKSNLIYRGVIPTEAGLCVSGCGALESAQHLFLSC 411
Query: 984 VTFSALWPMVRAWLGVVG 1001
F++LW +VR W+G VG
Sbjct: 410 SYFASLWSLVRDWIGFVG 357
Score = 21.6 bits (44), Expect(2) = 2e-26
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 1008 V*SFFAIY*LRRLFERASVFLPLNLVALCFGVVE* 1042
V*S ++ L R SVF P L +LC G ++*
Sbjct: 339 V*SLCSVCSLNRWQ*GFSVFSPAYLASLCLGFMD* 235
>AW686588
Length = 567
Score = 104 bits (259), Expect = 2e-22
Identities = 49/73 (67%), Positives = 56/73 (76%)
Frame = +1
Query: 930 *VPLKVSILAWRLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSAL 989
*VPLKVSILAWRL+RDRLPTK+NL R LA+EA CV GCG E NHLFL C TF A+
Sbjct: 139 *VPLKVSILAWRLIRDRLPTKANLVRRRCLAVEAAGCVVGCGIAETANHLFLHCATFGAV 318
Query: 990 WPMVRAWLGVVGS 1002
W +RAW+GV G+
Sbjct: 319 WQHIRAWIGVSGA 357
>BG586267 weakly similar to PIR|A84888|A8 hypothetical protein At2g45230
[imported] - Arabidopsis thaliana, partial (16%)
Length = 794
Score = 99.4 bits (246), Expect = 7e-21
Identities = 73/214 (34%), Positives = 103/214 (48%), Gaps = 6/214 (2%)
Frame = +3
Query: 180 LDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICW-QQSRLNWLRDGDANSKFFHSVL 238
L +KGEE L EL E + H+ I W Q+SRLNWLR GD N+KFFH+V
Sbjct: 60 LFNKGEELSLLRSELNE------EYHN-----EEIFWMQKSRLNWLRSGDRNTKFFHAVT 206
Query: 239 AARRRLNSLSSILVDGVVVEGVQP-FRQAVFTHFKNHFLDPRLERPGVGHLQFRKLSYL- 296
RR N + S++ D V+ + +HFK + E G+ + + +
Sbjct: 207 KNRRAQNRILSLIDDDDKEWFVEEDLGRLADSHFKLLYSS---EDVGITLEDWNSIPAIV 377
Query: 297 ---ERGGLTKPFSEDEIKAAVWDCDSFKSPGPDGINLGFFKSFWPEIKTDLVRFVTEFHR 353
+ L S +E++ AV+D + K PGPDG+N+ FF+ FW + DL EF R
Sbjct: 378 TEEQNAQLMAQISREEVREAVFDINPHKCPGPDGMNVFFFQQFWDTMGDDLTSMAQEFLR 557
Query: 354 NGKLAKGINSTFIALIPKVASPQSLNEFRPISLV 387
GKL +GIN T I K A + + P V
Sbjct: 558 TGKLEEGINKTNIWFGSKKAGGKEASGISPHKFV 659
Score = 59.7 bits (143), Expect = 6e-09
Identities = 31/77 (40%), Positives = 47/77 (60%)
Frame = +1
Query: 355 GKLAKGINSTFIALIPKVASPQSLNEFRPISLVGSMYKILAKILANRLRQVIGSVVSEAQ 414
G L + L+PK + L EFRPISL YKI++K+L+ RL+ V+ +++E Q
Sbjct: 562 GNLKRESTKQTSGLVPKKLEAKRLVEFRPISLCNVAYKIVSKVLSKRLKSVLPWIITETQ 741
Query: 415 SAFVKNRQILDGILIAN 431
+AF + + I D ILIA+
Sbjct: 742 AAFGRRQLISDNILIAH 792
>TC81386 similar to GP|10140689|gb|AAG13524.1 putative non-LTR retroelement
reverse transcriptase {Oryza sativa (japonica
cultivar-group)}, partial (1%)
Length = 798
Score = 84.3 bits (207), Expect = 2e-16
Identities = 73/256 (28%), Positives = 117/256 (45%), Gaps = 12/256 (4%)
Frame = -1
Query: 5 CVCGDFNTVRSVEERRSVRGSQVVDDCTPFNDFIEDRVLIDLLLSGRKFTWF---KGDGR 61
C GDFNT+ E + + F + + L L G FTW +G
Sbjct: 738 CCIGDFNTILGSHEHQGSHTPARLP-MLDFQQWSDVNNLFHLPTRGSAFTWTNGRRGRNN 562
Query: 62 SMRRLDRFL---LSVEWCMVWPNCIQVAQLRGLSDHCPILLSVDEENWG-PRPVRLLKCW 117
+ +RLDR + L ++ C C + +LR SDH PIL + +N + +K W
Sbjct: 561 TRKRLDRSIVNQLMIDNCESLSACT-LTKLR--SDHFPILFELQTQNIQFSSSFKFMKMW 391
Query: 118 QDMPGYIDFIREKWVFFQVSGWGGHVLKEKLKLMKVALKDWHAANTHNLPSKI----AEL 173
P I+ I++ W QV G VL +KLK +K LK W+ N+ S++ EL
Sbjct: 390 SAHPDCINIIKQCWAN-QVVGCPMFVLNQKLKNLKEVLKVWNKNTFGNVHSQVDNAYKEL 214
Query: 174 KI*QASLDSKGEEEQLSEEELGELHGISTDIHSLSRLITSICW-QQSRLNWLRDGDANSK 232
Q +DS G + L ++E + + ++ I + W ++S++NW +GD N+
Sbjct: 213 DDIQVKIDSIGYSDVLMDQEKAAQLNLESALN-----IEEVFWHEKSKVNWHCEGDRNTA 49
Query: 233 FFHSVLAARRRLNSLS 248
FFH V +R + +S
Sbjct: 48 FFHRVAKIKRTSSLIS 1
>BG587108 similar to PIR|G96509|G9 protein F27F5.21 [imported] - Arabidopsis
thaliana, partial (17%)
Length = 677
Score = 80.9 bits (198), Expect = 2e-15
Identities = 42/89 (47%), Positives = 56/89 (62%)
Frame = +3
Query: 330 LGFFKSFWPEIKTDLVRFVTEFHRNGKLAKGINSTFIALIPKVASPQSLNEFRPISLVGS 389
L FF+ W IK DL++ V F +GKL +N+T I LIPK P + E RPISL
Sbjct: 405 LSFFQHSWHIIKMDLLKMVNSFLASGKLDTRLNTTNICLIPKKKRPTRMTELRPISLCNV 584
Query: 390 MYKILAKILANRLRQVIGSVVSEAQSAFV 418
YKI++K+L RL+ + S++SE QSAFV
Sbjct: 585 GYKIISKVLCQRLKVCLPSLISETQSAFV 671
Score = 39.3 bits (90), Expect = 0.008
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Frame = +2
Query: 216 WQQ-SRLNWLRDGDANSKFFHSVLAARRRLNSLSSIL-VDGVVVEGVQPFRQAVFTHFKN 273
WQQ SR W GD N KF+H++ R N + + DG + Q + +F++
Sbjct: 53 WQQKSRNMWHISGDLNKKFYHALTKQRHARNRIVGLYDYDGNWITEEQGVEKVAVDYFED 232
Query: 274 HFLDPRLERPGV-GHLQFRKLSYLERGG--LTKPFSEDEIKAAVWDCDSFKSPGPDGINL 330
F R G G L S + L + +E+E++ A++ K+PGPDG+
Sbjct: 233 LF--QRTTPTGFDGFLDEITSSITPQMNQRLLRLATEEEVRLALFIMHPEKAPGPDGMTT 406
Query: 331 GFFKSFWPEIKTDLVRFVTEFHRNGKLAKG 360
F + + +++NG + G
Sbjct: 407 LLFST------------LMAYNKNGSIENG 460
>AW736247 weakly similar to PIR|T14619|T146 reverse transcriptase - beet
retrotransposon (fragment), partial (4%)
Length = 305
Score = 77.8 bits (190), Expect = 2e-14
Identities = 35/58 (60%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Frame = +1
Query: 305 FSEDEIKAAVWDCDSFKS--PGPDGINLGFFKSFWPEIKTDLVRFVTEFHRNGKLAKG 360
FSE+E++ AVWDCDS S PGPDG+N F K +W IK D +R V EFH NGKL KG
Sbjct: 121 FSEEEVRKAVWDCDSSHS*NPGPDGVNFTFVKEYWELIKVDFLRVVMEFHTNGKLGKG 294
>TC77455 similar to GP|22335695|dbj|BAC10549. nine-cis-epoxycarotenoid
dioxygenase1 {Pisum sativum}, partial (43%)
Length = 1865
Score = 70.5 bits (171), Expect = 3e-12
Identities = 54/159 (33%), Positives = 75/159 (46%), Gaps = 13/159 (8%)
Frame = -2
Query: 852 DLGGEALRWRRRLWAREEELVEECRALLLTVSLQESVT-----DRWLWVPNHDDGYSVRG 906
D+ E +RWR W R E E LL + E V D W+W P+ + +SV
Sbjct: 574 DMNAEGVRWRL-YWRRLELFEWEKERLLELLGRLEGVVLRYWADIWVWKPDKEGVFSVNS 398
Query: 907 VYDMLTSQE--QPQLHHNMELI----WHK*VPLKVSILAWRLLRDRLPTKSNLANRGILA 960
Y +L + + +L + E+I W P KV +W L DR+PT NL R +L
Sbjct: 397 CYFLLQNLRLLEDRLSYEEEVIFRELWKSKAPAKVLAFSWTLFLDRIPTMVNLGKRRLLR 218
Query: 961 LE-ARLCV-SGCGNVEDVNHLFLSCVTFSALWPMVRAWL 997
+E ++ CV GC + E V HLFL C S + V WL
Sbjct: 217 VEDSKRCVFCGCQD-ETVVHLFLHCDVISKV*REVMRWL 104
>BE999296
Length = 384
Score = 67.0 bits (162), Expect = 4e-11
Identities = 34/96 (35%), Positives = 48/96 (49%)
Frame = -1
Query: 904 VRGVYDMLTSQEQPQLHHNMELIWHK*VPLKVSILAWRLLRDRLPTKSNLANRGILALEA 963
+ G Y L S + P ++ +WH +PLKV R+LR+ LPTK N R ++ E
Sbjct: 306 IHGAYQFLMSADAPLDREYIDSVWHNHIPLKVCFFVLRVLRNCLPTKDNFVRRRVIHEEH 127
Query: 964 RLCVSGCGNVEDVNHLFLSCVTFSALWPMVRAWLGV 999
LC +GC E + LF LWP+V WL +
Sbjct: 126 MLCPTGCSFKETTDDLF--------LWPLV*QWLHI 43
>BG647708 weakly similar to GP|13786450|gb| putative reverse transcriptase
{Oryza sativa}, partial (9%)
Length = 708
Score = 66.2 bits (160), Expect = 6e-11
Identities = 38/93 (40%), Positives = 55/93 (58%)
Frame = +1
Query: 504 ERGLRQGDPLSPFLFLLAA*GLNVLMKALVDAGMFTGYRVGRADSVVVSHLQFADDTLLI 563
E+GLRQGDPLSP+LF+L A L+ L+K + G +V R+D ++HL FADD+LL
Sbjct: 7 EKGLRQGDPLSPYLFILCANVLSGLLKREGNKQNLHGIQVARSDP-KITHLLFADDSLLF 183
Query: 564 GNKSWANVRALRAGLVMFEAMSGLKVNFHKSSL 596
+ + L +++ SG VNF KS +
Sbjct: 184 ARANLTEAATIMQVLHSYQSASGQLVNFEKSEV 282
>BF650593
Length = 486
Score = 66.2 bits (160), Expect = 6e-11
Identities = 31/63 (49%), Positives = 39/63 (61%)
Frame = +3
Query: 928 HK*VPLKVSILAWRLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFS 987
HK VPLKVS L WRL ++ L T+ NL+ RG+L + CV CG E V+H F C FS
Sbjct: 297 HKSVPLKVSCLVWRLFQNXLATRDNLSKRGVLDQNSIXCVXDCGREESVSHFFFEC-PFS 473
Query: 988 ALW 990
+W
Sbjct: 474 XVW 482
>TC82520
Length = 833
Score = 62.8 bits (151), Expect(2) = 2e-10
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Frame = +3
Query: 905 RGVYDMLTSQEQPQLHHNMELIWHK*VPLKVSILAWRLLRDRLPTKSNLANRGILALEAR 964
RG Y LT QP + ++ +W K +P KVS+ WRL +RLPTK NL R +L
Sbjct: 123 RGTYRFLTISGQPLDRNQVDDVWQKNIPSKVSMFVWRLFHNRLPTKVNLMQRHVLQQTHT 302
Query: 965 LCVSGCGNVEDVNHLFLSCVTFSALWPM------VRAWLGVVG-SRFSFNV 1008
C+SG + H+ V F AL+ + + W ++ FSFN+
Sbjct: 303 ACISGVA-IRKRQHICFYIVIFLALFGLMFCVGYIFCWFYLLT*DNFSFNL 452
Score = 40.4 bits (93), Expect = 0.004
Identities = 44/141 (31%), Positives = 60/141 (42%), Gaps = 7/141 (4%)
Frame = +2
Query: 864 LWAREEELVEECRALLLTVSLQESVTD--RWLWVP--NHDDGYSVRGVYDMLTSQEQPQL 919
L+A EEE V E ALL LQE+V D RWL P + +G Y T +
Sbjct: 2 LFAWEEESVREWYALLHNTVLQENVHDVCRWLLDPI*GYTEGNISLSHYLWTTIG*ESS* 181
Query: 920 HHNMELIWHK*VPLKVSILAWRLLRD---RLPTKSNLANRGILALEARLCVSGCGNVEDV 976
+ K V ++V+ L+ + T S+ + G+ GCG+ E
Sbjct: 182 RCLAKEYSFKGVYVRVASLSQ*TSHEG*FNAATCSSTNSHGL--------HFGCGDSETA 337
Query: 977 NHLFLSCVTFSALWPMVRAWL 997
HLFL C F +LW V WL
Sbjct: 338 THLFLHCDIFGSLWSHVLRWL 400
Score = 21.6 bits (44), Expect(2) = 2e-10
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 1011 FFAIY*LRRLFERASVFLPLNLVALCFGVVE*KE* 1045
F +IY + S F ++V LC G +E KE*
Sbjct: 439 FHSIYFYGGFAKIYSFFFANHVVRLCLGALEEKE* 543
>BE941032
Length = 435
Score = 63.5 bits (153), Expect = 4e-10
Identities = 29/65 (44%), Positives = 37/65 (56%)
Frame = +2
Query: 936 SILAWRLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSCVTFSALWPMVRA 995
SI W +L +R PTK NL RG+++ + CV CGN+ D HLFL C F +W V
Sbjct: 146 SIFLWCVLLNRFPTKDNLLKRGVISAIYQSCVGECGNLYDATHLFLHCNFFRQIWINVSD 325
Query: 996 WLGVV 1000
WL V
Sbjct: 326 WLSFV 340
>BF520135
Length = 202
Score = 62.0 bits (149), Expect = 1e-09
Identities = 30/59 (50%), Positives = 38/59 (63%)
Frame = +3
Query: 925 LIWHK*VPLKVSILAWRLLRDRLPTKSNLANRGILALEARLCVSGCGNVEDVNHLFLSC 983
L+W K KVSI AWRL RLPTK+N+ RGI+ +A +CV+ C +E HLFL C
Sbjct: 12 LLWRKEDLSKVSIFAWRLFHGRLPTKANVFKRGIVHHDAHMCVTRCRLIESDVHLFLHC 188
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.338 0.149 0.505
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,851,703
Number of Sequences: 36976
Number of extensions: 588626
Number of successful extensions: 4030
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 2160
Number of HSP's successfully gapped in prelim test: 197
Number of HSP's that attempted gapping in prelim test: 1778
Number of HSP's gapped (non-prelim): 2489
length of query: 1050
length of database: 9,014,727
effective HSP length: 106
effective length of query: 944
effective length of database: 5,095,271
effective search space: 4809935824
effective search space used: 4809935824
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 63 (28.9 bits)
Medicago: description of AC135604.8