BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135604.6 - phase: 0
(314 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC86620 similar to GP|21166059|gb|AAM43676.1 SWIFT. 6/101 {Dicty... 632 0.0
AW688281 similar to PIR|T06370|T0 probable DNA (cytosine-5-)-met... 33 0.19
BF647566 similar to GP|9294624|dbj DNA repair protein RAD54-like... 32 0.32
TC76610 similar to PIR|T50802|T50802 serine/threonine protein ki... 32 0.41
TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical prot... 32 0.41
TC86473 similar to PIR|E84828|E84828 probable WD-40 repeat prote... 32 0.41
BG452985 similar to GP|15810627|gb putative zinc finger protein ... 32 0.41
TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed pr... 31 0.54
TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 31 0.71
TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone d... 30 0.92
TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 30 1.2
TC80981 similar to GP|8698730|gb|AAF78488.1| ESTs gb|Z18526 gb|... 30 1.6
TC78888 weakly similar to PIR|T43427|T43427 pob1 protein - fissi... 29 2.1
AJ497762 weakly similar to GP|15528439|emb MEK map kinase kinsae... 29 2.1
TC78136 similar to GP|22652297|gb|AAN03675.1 putative nucleopori... 29 2.1
TC86965 similar to GP|22022558|gb|AAM83236.1 At5g12410 {Arabidop... 29 2.7
TC86963 similar to GP|15148918|gb|AAK84886.1 homeodomain leucine... 29 2.7
TC79129 similar to PIR|A96725|A96725 hypothetical protein F20P5.... 29 2.7
TC87688 similar to GP|10177535|dbj|BAB10930. gene_id:K1F13.21~un... 29 2.7
TC79485 similar to GP|8809630|dbj|BAA97181.1 emb|CAB83157.1~gene... 29 2.7
>TC86620 similar to GP|21166059|gb|AAM43676.1 SWIFT. 6/101 {Dictyostelium
discoideum}, partial (3%)
Length = 1212
Score = 632 bits (1631), Expect = 0.0
Identities = 314/314 (100%), Positives = 314/314 (100%)
Frame = -1
Query: 1 MQVPLIDRLNDFQAGFNSLQQNPSFPSQITATSFNGIQSVSIAFNFCKWGAVILALVATF 60
MQVPLIDRLNDFQAGFNSLQQNPSFPSQITATSFNGIQSVSIAFNFCKWGAVILALVATF
Sbjct: 1125 MQVPLIDRLNDFQAGFNSLQQNPSFPSQITATSFNGIQSVSIAFNFCKWGAVILALVATF 946
Query: 61 TSLINKVTIFIIHLRKKASSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSM 120
TSLINKVTIFIIHLRKKASSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSM
Sbjct: 945 TSLINKVTIFIIHLRKKASSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSM 766
Query: 121 SSSSSFKDFFRLTGNSNDYDVNNVFQTQNSGHRRQHSIGDFFSLLELANGDNVVKLWDSI 180
SSSSSFKDFFRLTGNSNDYDVNNVFQTQNSGHRRQHSIGDFFSLLELANGDNVVKLWDSI
Sbjct: 765 SSSSSFKDFFRLTGNSNDYDVNNVFQTQNSGHRRQHSIGDFFSLLELANGDNVVKLWDSI 586
Query: 181 GFGLGLDFDEYEDGVISSTNPHAPLTSAAASPDVIVSAGEGAHGNLAVEIWDTRLRRRKP 240
GFGLGLDFDEYEDGVISSTNPHAPLTSAAASPDVIVSAGEGAHGNLAVEIWDTRLRRRKP
Sbjct: 585 GFGLGLDFDEYEDGVISSTNPHAPLTSAAASPDVIVSAGEGAHGNLAVEIWDTRLRRRKP 406
Query: 241 SVVAEWGPTVGNTLRVESGGVQKVYVRDNGRQRLTVGDMRKVSFPLGNVTESDADNTWWD 300
SVVAEWGPTVGNTLRVESGGVQKVYVRDNGRQRLTVGDMRKVSFPLGNVTESDADNTWWD
Sbjct: 405 SVVAEWGPTVGNTLRVESGGVQKVYVRDNGRQRLTVGDMRKVSFPLGNVTESDADNTWWD 226
Query: 301 ADAVIVTDESYGKH 314
ADAVIVTDESYGKH
Sbjct: 225 ADAVIVTDESYGKH 184
Score = 30.8 bits (68), Expect = 0.71
Identities = 20/57 (35%), Positives = 24/57 (42%)
Frame = +2
Query: 75 RKKASSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSSFKDFFR 131
RKK+ L D +SDDED SLSSSSE + S + F R
Sbjct: 734 RKKSLKLDEDDIDGSSSSNSDDEDKLTMSSFSLSSSSELKSSSLSKVIDGREEAFLR 904
>AW688281 similar to PIR|T06370|T0 probable DNA
(cytosine-5-)-methyltransferase (EC 2.1.1.37) - garden
pea, partial (14%)
Length = 685
Score = 32.7 bits (73), Expect = 0.19
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +3
Query: 55 ALVATFTSLINKV--TIFIIHLRKKASSLPSITFDNDDDFSSDDEDNENDD 103
A+ AT T LINK+ + HL + + + + +DDD + + E ENDD
Sbjct: 357 AMQATTTKLINKIWGEYYSNHLPEDSKEVIASEVKDDDDEAEEQEQEENDD 509
>BF647566 similar to GP|9294624|dbj DNA repair protein RAD54-like
{Arabidopsis thaliana}, partial (12%)
Length = 669
Score = 32.0 bits (71), Expect = 0.32
Identities = 14/33 (42%), Positives = 24/33 (72%)
Frame = -3
Query: 93 SSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSS 125
S ++E+ E+DD + SS SE +DD+ + ++SSS
Sbjct: 184 SEEEEEEEDDDTSTSSSESEEKDDDDNKTTSSS 86
Score = 28.9 bits (63), Expect = 2.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -3
Query: 94 SDDEDNENDDIVSLSSSS--EFEDDEPSMSSSSS 125
S++E+ E DD S SSS E +DD+ +SSSS
Sbjct: 184 SEEEEEEEDDDTSTSSSESEEKDDDDNKTTSSSS 83
Score = 28.1 bits (61), Expect = 4.6
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 100 ENDDIVSLSSSS--EFEDDEPSMSSSSSFKDFFRLTGNSNDYDVNNVFQTQN 149
E++D+V LSSSS D+E +SSSSS + +S+D ++ V Q ++
Sbjct: 84 EDEDVVLLSSSSFSSDSDEEVEVSSSSS-------SSSSSDSEIEQVSQRKS 218
>TC76610 similar to PIR|T50802|T50802 serine/threonine protein kinase-like
protein - Arabidopsis thaliana, partial (73%)
Length = 1799
Score = 31.6 bits (70), Expect = 0.41
Identities = 20/75 (26%), Positives = 38/75 (50%)
Frame = +2
Query: 74 LRKKASSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSSFKDFFRLT 133
+R A S+ D++ DFS DDE N + + V + + + S S+ F ++
Sbjct: 1103 MRPIAFSMKESAVDDNIDFSGDDEGNGDGNSVEVVGVTGTKH-----SRRPSYNAFEIIS 1267
Query: 134 GNSNDYDVNNVFQTQ 148
S+ +D+ N+F+T+
Sbjct: 1268 SLSHGFDLRNLFETR 1312
>TC82470 homologue to GP|23497460|gb|AAN37003.1 hypothetical protein
{Plasmodium falciparum 3D7}, partial (8%)
Length = 1064
Score = 31.6 bits (70), Expect = 0.41
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 76 KKASSLPSITFDNDDDFSSDDEDNENDDIVSLSSS 110
KK+ P+ D+DDD DD+D+++DD +S S
Sbjct: 5 KKSKVSPTPYDDDDDDDDDDDDDDDDDDDMSTDKS 109
Score = 30.0 bits (66), Expect = 1.2
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 77 KASSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFED-DEPSMSSSSSFKD 128
K S + +D+DDD DD+D+++DD +S+ F E + SF+D
Sbjct: 5 KKSKVSPTPYDDDDD-DDDDDDDDDDDDDDMSTDKSFSTLKEKLVLVEKSFED 160
Score = 27.3 bits (59), Expect = 7.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 75 RKKASSLPSITFDNDDDFSSDDEDNEND 102
+ K S P D+DDD DD+D+++D
Sbjct: 8 KSKVSPTPYDDDDDDDDDDDDDDDDDDD 91
>TC86473 similar to PIR|E84828|E84828 probable WD-40 repeat protein
[imported] - Arabidopsis thaliana, partial (68%)
Length = 2654
Score = 31.6 bits (70), Expect = 0.41
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Frame = +2
Query: 55 ALVATFTSLINKVTIFIIHLRKKASSL-------PSITFDNDDDFSSDDEDNENDDIVSL 107
AL + +S + K T+ ++KK S+ PS D+DDD S D + + D +S
Sbjct: 8 ALSLSPSSTMKKKTVVESEMKKKKSNEKEEAPPPPSDHDDSDDDDSDDSVEVSDYDSISE 187
Query: 108 ---SSSSEFEDDEPSMSSSSS 125
SS+ +DD+ S S S S
Sbjct: 188 DEDSSADSIDDDDSSDSDSDS 250
>BG452985 similar to GP|15810627|gb putative zinc finger protein {Arabidopsis
thaliana}, partial (29%)
Length = 564
Score = 31.6 bits (70), Expect = 0.41
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 79 SSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEP 118
+ L I +ND+ DD+DN+ND+ S ++DEP
Sbjct: 21 NKLKEIRMENDEFVDEDDDDNDNDN--DFDDSDSDDEDEP 134
>TC89427 weakly similar to GP|4557063|gb|AAD22502.1| expressed protein
{Arabidopsis thaliana}, partial (50%)
Length = 753
Score = 31.2 bits (69), Expect = 0.54
Identities = 13/30 (43%), Positives = 18/30 (59%)
Frame = +1
Query: 88 NDDDFSSDDEDNENDDIVSLSSSSEFEDDE 117
+DDD DD+D++NDD E +DDE
Sbjct: 448 DDDDEDDDDDDDDNDDGEDEDEDEEEDDDE 537
Score = 28.5 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 19/32 (58%)
Frame = +1
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDEP 118
D DDD +DED++ND+ S + ED +P
Sbjct: 322 DEDDDDDVNDEDDDNDE--DFSGDEDDEDADP 411
Score = 28.5 bits (62), Expect = 3.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 81 LPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSSFK 127
+P+ +DDD DD+D++++D E EDD+ S K
Sbjct: 424 VPNGAGGSDDDDEDDDDDDDDNDDGEDEDEDEEEDDDEDQPPSKKKK 564
Score = 27.3 bits (59), Expect = 7.8
Identities = 15/43 (34%), Positives = 24/43 (54%)
Frame = -2
Query: 106 SLSSSSEFEDDEPSMSSSSSFKDFFRLTGNSNDYDVNNVFQTQ 148
S SSSS + S+SSSSSF + +S+ + ++F +Q
Sbjct: 407 SASSSSSSPEKSSSLSSSSSFTSSSSSSSSSSSVSLPSLFSSQ 279
Score = 27.3 bits (59), Expect = 7.8
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 78 ASSLPSITFDNDDDFSSDDEDNENDD-IVSLSSSSEFEDDEPSMSSSSS 125
+SSLP F S + + + SLSSSS F S SSSSS
Sbjct: 455 SSSLPPAPFGTGSSSGSASSSSSSPEKSSSLSSSSSFTSSSSSSSSSSS 309
>TC76514 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (61%)
Length = 1288
Score = 30.8 bits (68), Expect = 0.71
Identities = 26/91 (28%), Positives = 35/91 (37%), Gaps = 14/91 (15%)
Frame = +3
Query: 77 KASSLPSITFDNDDDFSSDDED------------NENDDIVSLSSSSEFEDDEPSMSSSS 124
K S S D++DD SS DED N + D S E +DEPS +
Sbjct: 921 KKSKKDSSDSDDEDDDSSSDEDKKPVAAKKEDKMNVDKDGSDSDQSEEESEDEPSKTPQK 1100
Query: 125 SFKDFFRLTGNSNDYDVNNVFQT--QNSGHR 153
KD + + N T +NSG +
Sbjct: 1101 KIKDVEMVDAGKSGKKAPNTPATPIENSGSK 1193
>TC77681 similar to GP|22597156|gb|AAN03465.1 nucleolar histone deacetylase
HD2-P39 {Glycine max}, partial (47%)
Length = 1233
Score = 30.4 bits (67), Expect = 0.92
Identities = 16/31 (51%), Positives = 20/31 (63%), Gaps = 1/31 (3%)
Frame = +2
Query: 87 DNDDDFSSDDEDNENDD-IVSLSSSSEFEDD 116
D+DDD SDDE +DD + + S SE EDD
Sbjct: 575 DSDDDDESDDEIGSSDDEMENADSDSEDEDD 667
Score = 27.3 bits (59), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 87 DNDDDFSSDDEDNENDDIVSLSSSSEFEDDE 117
++DD+ S D++ EN D S EDDE
Sbjct: 593 ESDDEIGSSDDEMENADSDSEDEDDSDEDDE 685
>TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (69%)
Length = 1615
Score = 30.0 bits (66), Expect = 1.2
Identities = 59/252 (23%), Positives = 86/252 (33%), Gaps = 42/252 (16%)
Frame = +3
Query: 76 KKASSLPSITFDNDDDF---------------------SSDDEDNENDDIVSLSS--SSE 112
KK+ S + D DDD SSDDED N D S S E
Sbjct: 243 KKSKKDSSDSDDEDDDSSSDEDKKPVAAKKEVSESESDSSDDEDKMNVDKDGSDSDESEE 422
Query: 113 FEDDEPSMSSSSSFKDFFRLTGNSNDYDVNNVFQT--QNSGHRRQHSIGDFFSLLELANG 170
+DEPS + KD + + N T +NSG + FS+
Sbjct: 423 ESEDEPSKTPQKKIKDVEMVDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSV----QR 590
Query: 171 DNVVKLWDSIGFGLGLDFDEYEDGVISSTNPHAPLTSAAASPDVIVSAGEGAHGNLAVEI 230
++ K + G + + F E+G H SA A+ + G+ E+
Sbjct: 591 SDIEKFFQDCGEVVDVRFSSDEEGRFKGFG-HVEFASAEAAQSALEMNGQ--------EL 743
Query: 231 WDTRLRRRKPSVVAEWGPTVGNTLRVESGG---VQKVYVR--------DNGRQRL----- 274
+R + P + +SGG Q V+VR D R +L
Sbjct: 744 LQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAKLMEHFG 923
Query: 275 -TVGDMRKVSFP 285
T G+ +VS P
Sbjct: 924 GTCGEPTRVSIP 959
>TC80981 similar to GP|8698730|gb|AAF78488.1| ESTs gb|Z18526 gb|AI994480
gb|T44186 gb|Z30806 come from this gene. {Arabidopsis
thaliana}, partial (37%)
Length = 699
Score = 29.6 bits (65), Expect = 1.6
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 87 DNDDDFSSDDEDNENDDIVSLS-SSSEFEDD 116
D DDD S D +D+++D ++S S S+F DD
Sbjct: 372 DEDDDDSDDSDDSDDDSDGNVSGSDSDFSDD 464
>TC78888 weakly similar to PIR|T43427|T43427 pob1 protein - fission yeast
(Schizosaccharomyces pombe), partial (4%)
Length = 956
Score = 29.3 bits (64), Expect = 2.1
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +3
Query: 87 DNDDDFSSDDEDNEN---DDIVSL--SSSSEFEDDEPSMSSSSSFKDFFRLTGNSNDYDV 141
D DDD +D N + D + S+ SSSSE +DD+ + SS+SS N Y++
Sbjct: 219 DVDDDDVTDSISNGSITEDSMNSMCSSSSSELDDDQEASSSTSSLSSSSSSHSNGPLYEL 398
Query: 142 NNV 144
+ +
Sbjct: 399 SEL 407
>AJ497762 weakly similar to GP|15528439|emb MEK map kinase kinsae {Medicago
sativa subsp. x varia}, partial (5%)
Length = 498
Score = 29.3 bits (64), Expect = 2.1
Identities = 11/29 (37%), Positives = 21/29 (71%)
Frame = +1
Query: 85 TFDNDDDFSSDDEDNENDDIVSLSSSSEF 113
T+D+DDD DD+ ++ND+++S + + F
Sbjct: 169 TYDDDDD---DDDSDDNDELISPAGGNHF 246
>TC78136 similar to GP|22652297|gb|AAN03675.1 putative nucleoporin PRECOZ
{Arabidopsis thaliana}, partial (48%)
Length = 2532
Score = 29.3 bits (64), Expect = 2.1
Identities = 27/107 (25%), Positives = 43/107 (39%)
Frame = +3
Query: 75 RKKASSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSSFKDFFRLTG 134
RK+ + S+ DN++D D ++ +ND + + + + F + R
Sbjct: 573 RKQKGQIESLGADNEEDMMEDIKEVDND----------VDQEALPLIRRAEFSYWMR--- 713
Query: 135 NSNDYDVNNVFQTQNSGHRRQHSIGDFFSLLELANGDNVVKLWDSIG 181
S Y V N + N H QH F+LL D V+L S G
Sbjct: 714 ESVSYHVQNQISSLNDSHYLQH----VFTLLTGRQLDEAVQLAVSNG 842
>TC86965 similar to GP|22022558|gb|AAM83236.1 At5g12410 {Arabidopsis
thaliana}, partial (59%)
Length = 1455
Score = 28.9 bits (63), Expect = 2.7
Identities = 14/42 (33%), Positives = 21/42 (49%)
Frame = +1
Query: 84 ITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDDEPSMSSSSS 125
ITF + D S DD++ E + E ED +P + S+S
Sbjct: 313 ITFADSDSSSIDDDEEEEEKAQVPEGGEEKEDKKPKLDVSNS 438
>TC86963 similar to GP|15148918|gb|AAK84886.1 homeodomain leucine zipper
protein HDZ2 {Phaseolus vulgaris}, partial (87%)
Length = 1519
Score = 28.9 bits (63), Expect = 2.7
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 5/49 (10%)
Frame = +1
Query: 79 SSLPSITFDNDDDFSSDDEDNEN--DDIVSLSSSSEFED---DEPSMSS 122
++L S D DFS D+EDN+N ++++L + ED D+P +S
Sbjct: 1249 NNLSSFIEPTDSDFSQDEEDNDNLSHNLLTLPCLPKVEDVCYDDPHENS 1395
>TC79129 similar to PIR|A96725|A96725 hypothetical protein F20P5.7
[imported] - Arabidopsis thaliana, partial (64%)
Length = 1328
Score = 28.9 bits (63), Expect = 2.7
Identities = 21/62 (33%), Positives = 28/62 (44%), Gaps = 2/62 (3%)
Frame = -3
Query: 76 KKASSLPSITFDNDDDFSSDDEDNENDDIVSLSSSSEFEDD-EPSMSSSSSFKDF-FRLT 133
K A S + +NDDD + DD+D + S S D+ P SS S D R+
Sbjct: 282 KTAIDSSSSSANNDDDGNCDDDDESRSEEHSGKSPVRTSDESSPQRSSQSEVLDSGMRIA 103
Query: 134 GN 135
GN
Sbjct: 102 GN 97
>TC87688 similar to GP|10177535|dbj|BAB10930. gene_id:K1F13.21~unknown
protein {Arabidopsis thaliana}, partial (46%)
Length = 2077
Score = 28.9 bits (63), Expect = 2.7
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 14/153 (9%)
Frame = -2
Query: 17 NSLQQNPSFPSQITATSFNGIQSVSIAFN-----FCKWGAVILALVATFTSLINKVTIFI 71
+S+ +P+F S +++ + S+S F+ F K+ +V ++ +S+ +T
Sbjct: 720 SSISNSPAFSSSSSSSLSSSASSLSSPFS*LSSSFSKY-SVNSSIFKNLSSIPPPLTFSF 544
Query: 72 IHLRKKASSLPSITFDNDDDFSSDDEDNENDDIVSL----SSSSEFEDDEPSMSSSSS-- 125
+SSLPS + + SS S SSSS + S+SSSS+
Sbjct: 543 SSSSSSSSSLPSSSSSSSSSKSSSPSLPPFAFFFSTPSKSSSSSSNSSSKSSLSSSSNST 364
Query: 126 ---FKDFFRLTGNSNDYDVNNVFQTQNSGHRRQ 155
F +FF + + + +++ F T RR+
Sbjct: 363 RFFFSNFFPTSKGTLNCAISSGFLTN*FNRRRR 265
>TC79485 similar to GP|8809630|dbj|BAA97181.1
emb|CAB83157.1~gene_id:MKN22.7~similar to unknown
protein {Arabidopsis thaliana}, partial (25%)
Length = 897
Score = 28.9 bits (63), Expect = 2.7
Identities = 17/35 (48%), Positives = 20/35 (56%), Gaps = 1/35 (2%)
Frame = +1
Query: 92 FSSDDEDNENDDIVSLSSSSEFED-DEPSMSSSSS 125
FSSD E + + LS S FED P+ SSSSS
Sbjct: 184 FSSDSEVSNGNSSSELSESDSFEDVTSPTSSSSSS 288
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.315 0.133 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,961,972
Number of Sequences: 36976
Number of extensions: 123884
Number of successful extensions: 1306
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of query: 314
length of database: 9,014,727
effective HSP length: 96
effective length of query: 218
effective length of database: 5,465,031
effective search space: 1191376758
effective search space used: 1191376758
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Medicago: description of AC135604.6