TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135565.5 + phase: 0 /pseudo
         (93 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BE941280 weakly similar to GP|20197614|g unknown protein {Arabid...    57  9e-10
BI271341                                                               37  0.001
BG644400 similar to GP|10177409|dbj contains similarity to unkno...    27  1.7
BI310580                                                               25  3.9
TC87661 similar to GP|14517356|gb|AAK62569.1 AT4g15540/dl3810w {...    25  5.1
TC88422 similar to GP|21592839|gb|AAM64789.1 unknown {Arabidopsi...    24  8.6

>BE941280 weakly similar to GP|20197614|g unknown protein {Arabidopsis
           thaliana}, partial (8%)
          Length = 403

 Score = 57.4 bits (137), Expect = 9e-10
 Identities = 27/48 (56%), Positives = 38/48 (78%)
 Frame = -1

Query: 1   MMNRFCFVALDKTLRNVMGSENKDNKTKPFGGKVFVLVGDFRQVLPVV 48
           MM++ CF ALD++LR+V+ + ++ NK  PFGGKV VL GDFRQ+L V+
Sbjct: 145 MMHKHCFEALDRSLRDVLKTVDERNKDIPFGGKVVVLGGDFRQILLVM 2


>BI271341 
          Length = 468

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 17/52 (32%), Positives = 30/52 (57%)
 Frame = +1

Query: 41 FRQVLPVVRVATRQQIVSSAVNASKVWRRCEVLRLTMNMGLSTANNNADQEE 92
          FR +LPV+   +R  I+ + +N+S +   C+V+RL  NM L     +++  E
Sbjct: 1  FR*ILPVIPRGSRSDIIHATINSSCI*DHCQVVRLKKNMWLQQNGQSSNDPE 156


>BG644400 similar to GP|10177409|dbj contains similarity to unknown
           protein~gene_id:K24M7.18~pir||T05785 {Arabidopsis
           thaliana}, partial (4%)
          Length = 677

 Score = 26.6 bits (57), Expect = 1.7
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +1

Query: 55  QIVSSAVNASKVWRRCEVLRLTMNMGL 81
           +I+S A+N  K W +C++  +T++M L
Sbjct: 385 RILSVALNDRKTWLKCQMDTITVDMSL 465


>BI310580 
          Length = 297

 Score = 25.4 bits (54), Expect = 3.9
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -1

Query: 6   CFVALDKTLRNVMGSENKDNKTKP 29
           C++++  T + ++GS+  D+ TKP
Sbjct: 255 CYISVQVTTQQLVGSQKTDHITKP 184


>TC87661 similar to GP|14517356|gb|AAK62569.1 AT4g15540/dl3810w
          {Arabidopsis thaliana}, partial (58%)
          Length = 1258

 Score = 25.0 bits (53), Expect = 5.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 22 NKDNKTKPFGGKVFVLVGDFRQVLP 46
          NK+N T   GG  F L  D  QVLP
Sbjct: 9  NKENMTAESGGLNFDLPEDVMQVLP 83


>TC88422 similar to GP|21592839|gb|AAM64789.1 unknown {Arabidopsis
           thaliana}, partial (67%)
          Length = 782

 Score = 24.3 bits (51), Expect = 8.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 3   NRFCFVALDKTLRNVMGSENKDNKTKPFGGKVF 35
           N  C     K +R ++G + K N  +PFG KVF
Sbjct: 205 NVLCHTTKLKIIRPLIGMK-KTNYVQPFGRKVF 110


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,380,772
Number of Sequences: 36976
Number of extensions: 19774
Number of successful extensions: 110
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of query: 93
length of database: 9,014,727
effective HSP length: 69
effective length of query: 24
effective length of database: 6,463,383
effective search space: 155121192
effective search space used: 155121192
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)