BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.5 - phase: 0 /pseudo
(1283 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF635063 weakly similar to PIR|F84486|F84 probable retroelement ... 276 4e-74
TC89912 weakly similar to PIR|B84512|B84512 probable retroelemen... 146 6e-35
TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative ret... 119 1e-29
BG646342 weakly similar to PIR|F84486|F84 probable retroelement ... 116 6e-26
TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-relate... 87 4e-17
BG587170 similar to PIR|F86470|F8 probable retroelement polyprot... 73 8e-13
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr... 72 2e-12
BE941052 weakly similar to PIR|B85188|B85 retrotransposon like p... 63 8e-10
BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440... 59 9e-09
BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x pa... 59 2e-08
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V... 54 5e-07
AW773859 49 1e-05
TC87868 similar to PIR|T05112|T05112 splicing factor 9G8-like SR... 48 3e-05
AW736233 GP|21105451|gb small nuclear ribonucleoprotein D1 {Dani... 43 7e-04
TC93065 40 0.004
BQ122739 40 0.004
AJ497569 weakly similar to PIR|T04833|T04 hypothetical protein F... 37 0.049
BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F... 37 0.049
TC81207 similar to GP|21322752|dbj|BAB78536. cold shock protein-... 36 0.084
TC83624 homologue to PIR|G84581|G84581 copia-like retroelement p... 35 0.24
>BF635063 weakly similar to PIR|F84486|F84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(4%)
Length = 677
Score = 276 bits (706), Expect = 4e-74
Identities = 141/189 (74%), Positives = 160/189 (84%)
Frame = -2
Query: 2 MGSKWDIEKFTGSNLFGLWKVKMRAILIQEKCVEALKREAQMSAHLTPAEKTEMNDKAVS 61
MGSK DIEKFTG N FGLWKVKM A+LIQ+KC +ALK E + ++ AEKTEM DKA S
Sbjct: 568 MGSKRDIEKFTGDNDFGLWKVKMEAVLIQQKCEKALKGEVSLPVTMSRAEKTEMVDKARS 389
Query: 62 AIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYRMMESKPIMEQ 121
AI+LCLGDK+LREV++E TA SMW KL LYMTKSLAHRQ LKQQLY +RM+ESK IMEQ
Sbjct: 388 AIVLCLGDKVLREVAKERTAASMWAKL*SLYMTKSLAHRQFLKQQLYSFRMVESKAIMEQ 209
Query: 122 LTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQATLI 181
LTEFNKI+DDL NI+V LEDE+KA+ LLCALP+SFE+FKDTMLYGKEGT+TLEEVQA L
Sbjct: 208 LTEFNKILDDLENIEVQLEDEEKAILLLCALPKSFESFKDTMLYGKEGTVTLEEVQAALR 29
Query: 182 TKELTKFKD 190
TKELTK D
Sbjct: 28 TKELTKSND 2
>TC89912 weakly similar to PIR|B84512|B84512 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(10%)
Length = 814
Score = 146 bits (368), Expect = 6e-35
Identities = 69/95 (72%), Positives = 80/95 (83%)
Frame = +1
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFV 1240
YI + +AIWLKGMIGE+GI+Q VKIHCDSQSAIHLANHQ+YHERTKHI+IRLHF+
Sbjct: 235 YIAFVEGVKDAIWLKGMIGELGITQEYVKIHCDSQSAIHLANHQVYHERTKHIDIRLHFI 414
Query: 1241 RDMIETKEIKVEKVASEENPADIFTKSLPRSRFKH 1275
RDMIE+KEI VEK+ASEENPAD+FTK +R H
Sbjct: 415 RDMIESKEIVVEKMASEENPADVFTKLKKHARATH 519
Score = 63.5 bits (153), Expect = 5e-10
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +3
Query: 1129 SFKVGSEIFEWIFERWSKVYKVTTR*GCFGGICGCGLCR*CRH*KIFVRFCVYIVWYNSN 1188
SF+VG E+FE +FE +V+K ++R FGG+C C LC C H KI + FCVY +W++
Sbjct: 3 SFEVGVEVFE*VFEEQFEVHKSSSRGRRFGGVC*CRLCGQCGHKKISIGFCVYSLWHDY* 182
Query: 1189 LE 1190
LE
Sbjct: 183 LE 188
>TC93066 weakly similar to GP|19920130|gb|AAM08562.1 Putative retroelement
{Oryza sativa} [Oryza sativa (japonica cultivar-group)],
partial (10%)
Length = 823
Score = 119 bits (298), Expect(2) = 1e-29
Identities = 57/126 (45%), Positives = 78/126 (61%), Gaps = 1/126 (0%)
Frame = +1
Query: 446 LNKLDFCDNCTL-GKQHKVKFGVGVHKSSRPFE*VHSDLLGPA*VKTYGGGSYFTSIIDD 504
++KL+FC + G + KV F H++ + +HSDL GP+ V +YGG Y +IIDD
Sbjct: 4 IDKLEFCKHLLFFGNRKKVSFSTATHRTKGILDYIHSDLWGPSKVTSYGGRRYMMTIIDD 183
Query: 505 YSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRKKGI 564
+ R+VWVY L+ K++ F FK+W ILVE Q G +K L TDN EF FNEFC GI
Sbjct: 184 FPRKVWVYFLRYKNETFPTFKKWRILVETQTGKNVKKLITDN*LEFCSSDFNEFCTNHGI 363
Query: 565 KRHRIV 570
RH+ +
Sbjct: 364 ARHKTI 381
Score = 30.0 bits (66), Expect(2) = 1e-29
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 575 TERSC*KNEQDLVGACEVYAAGSWIVQE--FLGRGC*YC 611
T+R C N+QD +YA W+++ LGRG YC
Sbjct: 396 TKRCCRTNDQDST*ESSMYALKCWVIELT*SLGRGSIYC 512
>BG646342 weakly similar to PIR|F84486|F84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(4%)
Length = 599
Score = 116 bits (290), Expect = 6e-26
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = +2
Query: 59 AVSAIILCLGDKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYRMMESKPI 118
A SAI+LCLGDK+LREV++E TA SM KL+ LYMTKSLAHRQ LKQQLY ++M+ESK I
Sbjct: 2 ARSAIVLCLGDKVLREVAKEPTATSMCAKLEYLYMTKSLAHRQFLKQQLYSFKMVESKAI 181
Query: 119 MEQLTEFNKIIDDLANIDVNLEDEDKALHLLCAL 152
E L EFNKII DL NI+V+LED AL + C L
Sbjct: 182 TELLVEFNKIIGDLENIEVHLEDAG-ALMVWCCL 280
>TC85125 weakly similar to SP|P10978|POLX_TOBAC Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
(EC 3.4.23.-);, partial (7%)
Length = 705
Score = 87.0 bits (214), Expect = 4e-17
Identities = 36/87 (41%), Positives = 60/87 (68%)
Frame = +3
Query: 1190 EAIWLKGMIGEMGISQGCVKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEI 1249
EAIW++ ++ E+G Q + ++CDSQSA+H+A + +H RTKHI I+ HFVR+++E +
Sbjct: 249 EAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSRTKHIGIQYHFVREVVEEGSV 428
Query: 1250 KVEKVASEENPADIFTKSLPRSRFKHC 1276
++K+ + +N AD TKS+ +F C
Sbjct: 429 DMQKIHTNDNLADAMTKSINTDKFIWC 509
>BG587170 similar to PIR|F86470|F8 probable retroelement polyprotein
[imported] - Arabidopsis thaliana, partial (13%)
Length = 718
Score = 72.8 bits (177), Expect = 8e-13
Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 2/202 (0%)
Frame = -3
Query: 384 VIAKGSKIHGLYILEGSTIIAH--ASVPSVDTLDITKLWHLRLGHVSERGLVELAKQGLL 441
+I +G LY+LE +++ S S +L+ LWH RLGH R L L G++
Sbjct: 695 LIGEGVTKGDLYMLEKLDPVSNYKCSFTSSSSLNKDALWHARLGHPHGRAL-NLMLPGVV 519
Query: 442 GNEKLNKLDFCDNCTLGKQHKVKFGVGVHKSSRPFE*VHSDLLGPA*VKTYGGGSYFTSI 501
K C+ C LGK K F F+ +++D L A + YF +
Sbjct: 518 FENK-----NCEACILGKHCKNVFPRTSTVYENCFDLIYTD-LWTAPSLSRDNHKYFVTF 357
Query: 502 IDDYSRRVWVYILKNKSDAFEKFKEWDILVENQIGTKLKVLRTDNGQEFVLEQFNEFCRK 561
ID+ S+ W+ ++ +K + FK + V N K+K+LR+DNG E+ F
Sbjct: 356 IDEKSKYTWLTLIPSKDRVIDAFKNFQAYVTNHYHAKIKILRSDNGGEYTSYAFKSHLDH 177
Query: 562 KGIKRHRIVAYTSTERSC*KNE 583
GI YT + K +
Sbjct: 176 HGILHQTSCPYTPQQNGVAKRK 111
>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
sativa}, partial (9%)
Length = 542
Score = 71.6 bits (174), Expect = 2e-12
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Frame = +2
Query: 1181 YIVWYNSNLEAIWLKGMIGEMGISQGC-VKIHCDSQSAIHLANHQIYHERTKHINIRLHF 1239
YI + + +WL+ ++ M Q KI+CD++SAI L+ + ++H R+KHI+I+ H
Sbjct: 131 YIASTSCATQTVWLRRILEVMHHEQNTPTKIYCDNKSAIALSKNPVFHGRSKHIDIQFHK 310
Query: 1240 VRDMIETKEIKVEKVASEENPADIFTKSLPRSRF 1273
+R++I KE+ +E +EE ADIFTK L F
Sbjct: 311 IRELIAEKEVVIEYCPTEEKIADIFTKPLKIESF 412
>BE941052 weakly similar to PIR|B85188|B85 retrotransposon like protein
[imported] - Arabidopsis thaliana, partial (4%)
Length = 480
Score = 62.8 bits (151), Expect = 8e-10
Identities = 27/63 (42%), Positives = 43/63 (67%)
Frame = +2
Query: 1210 IHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEIKVEKVASEENPADIFTKSLP 1269
+ CD SA +L ++ +YH R KHI+I +HFVRD+++ ++KV+ V + + AD TK L
Sbjct: 23 LRCDYLSATYLTHNPVYHSRMKHISIDIHFVRDLVQQGKLKVQHVCTVDQLADCLTKPLS 202
Query: 1270 RSR 1272
+SR
Sbjct: 203 KSR 211
>BG587141 similar to PIR|H86461|H86 hypothetical protein AAF32440.1 [imported]
- Arabidopsis thaliana, partial (20%)
Length = 731
Score = 59.3 bits (142), Expect = 9e-09
Identities = 34/96 (35%), Positives = 56/96 (57%), Gaps = 2/96 (2%)
Frame = +3
Query: 1190 EAIWLKGMIGEMGISQGC--VKIHCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETK 1247
+A+WL+ ++ E+ + C V I D+QS I L + ++H R HI+ R HF+R+ +E
Sbjct: 135 QAMWLQDLLSEV-TWEPCEEVVIRIDNQSVIALTRNPVFHGRGNHIHKRYHFIRECVENG 311
Query: 1248 EIKVEKVASEENPADIFTKSLPRSRFKHCLDLINFI 1283
+++VE V E++ A I TK+L R F+ I I
Sbjct: 312 QVEVEHVPGEKHRAYI*TKALGRIIFREIRYYIGMI 419
>BF648150 similar to GP|14586969|gb| pol polyprotein {Citrus x paradisi},
partial (3%)
Length = 658
Score = 58.5 bits (140), Expect = 2e-08
Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 8/136 (5%)
Frame = +2
Query: 65 LCLG-------DKMLREVSRETTAVSMWNKLDLLYMTKSLAHRQCLKQQLYFYRMMESKP 117
+CLG D + +A +W+KL+ YM + ++ L Y+M+++K
Sbjct: 197 ICLGHILNGMSDSLFDIYQSSPSAKDLWDKLETRYMREDATSKKFLVSHFNNYKMVDNKS 376
Query: 118 IMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDTMLYGKEGTITLEEVQ 177
+MEQL E +I+++ ++N+++ ++ LP S+++FK TM + KE I+LE++
Sbjct: 377 VMEQLYEIERILNNYKQHNMNMDETIIVSSIIDKLPPSWKDFKRTMKHKKE-DISLEQLG 553
Query: 178 ATL-ITKELTKFKDLK 192
L + +E K + +K
Sbjct: 554 NHLRLXEEYRKQEGIK 601
>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
vinifera}, partial (18%)
Length = 567
Score = 53.5 bits (127), Expect = 5e-07
Identities = 27/91 (29%), Positives = 50/91 (54%)
Frame = +3
Query: 277 TVTSWEPEKGWVLDSGCSYHISPRKGYFETLELEEGGVVRLGNNKACKIQGIGTIRLKMF 336
T + +P K W++DSGC++H++ + F+ L VR+ N +++GIGT+ +K
Sbjct: 78 TFATKQPSKYWLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKSH 257
Query: 337 DDRDFLLKDVRYIPELRRNLISISMFDGLGY 367
+ +V Y P+L ++L+S+ GY
Sbjct: 258 SGYK-QISNVLYAPKLNQSLLSVPQLLTKGY 347
>AW773859
Length = 538
Score = 49.3 bits (116), Expect = 1e-05
Identities = 34/110 (30%), Positives = 50/110 (44%), Gaps = 7/110 (6%)
Frame = -3
Query: 384 VIAKGSKIHGLYILEG----STIIAHASV---PSVDTLDITKLWHLRLGHVSERGLVELA 436
+I G GLY L S IA + V P L LWH RLGH+S R L+ L
Sbjct: 356 MIGSGELFEGLYFLTTQDTPSATIASSQVQPQPQPTFLPQEALWHFRLGHLSNRKLLSLH 177
Query: 437 KQGLLGNEKLNKLDFCDNCTLGKQHKVKFGVGVHKSSRPFE*VHSDLLGP 486
+++ CD C + K+ F + +++S+ +E H D+ GP
Sbjct: 176 SN--FPFITIDQNSVCDICHYSRHKKLPFQLSTNRASKCYELFHFDIWGP 33
>TC87868 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
RSZp22 [validated] - Arabidopsis thaliana, partial (91%)
Length = 860
Score = 47.8 bits (112), Expect = 3e-05
Identities = 30/107 (28%), Positives = 40/107 (37%), Gaps = 2/107 (1%)
Frame = +3
Query: 195 DSGEGLNVSRGRNQNRGKGKGKNSKSKSRSKGDGNKTKYKCFICHNPGHFKKDCPERKDN 254
D G V N G G G + R G G + KC+ C PGHF ++C R
Sbjct: 216 DGKNGWRVELSHNSRSGGGGGGGGGGRGRGGGGGGGSDLKCYECGEPGHFARECRNRGGG 395
Query: 255 GGGNPSVQLASKDEGCESAG--ALTVTSWEPEKGWVLDSGCSYHISP 299
G G + + S G + + P + V G SY SP
Sbjct: 396 GAGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSP 536
>AW736233 GP|21105451|gb small nuclear ribonucleoprotein D1 {Danio rerio},
partial (14%)
Length = 510
Score = 43.1 bits (100), Expect = 7e-04
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Frame = +1
Query: 171 ITLEEVQATLITKEL-TKFKDLKVDDSG-EGLNVSRGRNQNRGKGKGKNSKSKSRSKGDG 228
+T V A L EL +K + + + G E N RGR + RG+G+G +G
Sbjct: 127 LTNPSVSANLAQSELPSKPGNSESQEVGTEYYNAGRGRGRGRGRGRG---------RGRS 279
Query: 229 NKTKYKCFICHNPGHFKKDCPERKDNGGGNPSVQLASKDEGCESAGALTVTSWEPEKGWV 288
N + +C IC H C R D + + A E +S E W
Sbjct: 280 NSNRLQCQICARNNHDAARCCFRYDQASSSQAHHRAPPSE-------YAASSSYSEAPWY 438
Query: 289 LDSGCSYHIS 298
DSG S+H++
Sbjct: 439 PDSGASHHLT 468
>TC93065
Length = 783
Score = 40.4 bits (93), Expect = 0.004
Identities = 34/157 (21%), Positives = 66/157 (41%), Gaps = 8/157 (5%)
Frame = +2
Query: 103 LKQQLYFYRMMESKPIMEQLTEFNKIIDDLANIDVNLEDEDKALHLLCALPRSFENFKDT 162
L+++ +M E++ + E +K++ + + +L D+ +L LP FE +
Sbjct: 215 LRREFEALKMKETETVREFSDRISKVVTQIRLLGEDLSDQRVVEKILVCLPEMFEAKISS 394
Query: 163 MLYGKE-GTITLEEVQATLITKELTKFKDLKVDDSGEGLNVSRGRNQNRGKGKGKNSKSK 221
+ K IT+ E+ L E + ++ + G L ++G+NQ+ K
Sbjct: 395 LEENKNFSEITVAELVNALQASEQRRSLRMEENVEGAFLANNKGKNQSFKSFGKKKFPPC 574
Query: 222 SRSKGDGNKTKY-------KCFICHNPGHFKKDCPER 251
K D + K+ KC C+ GH +K C +
Sbjct: 575 PHCKKDTHLDKFCWYRPGVKCRACNQLGHVEKVCKNK 685
>BQ122739
Length = 575
Score = 40.4 bits (93), Expect = 0.004
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 359 ISMFDGLGYCTRIERGVMRISHGALVIAKGSKIHGLYILEGSTIIAHASVPSVD-TLDIT 417
I + D GY IE G +RI++ ++V+ KG +GL +L G T + A + L +
Sbjct: 214 ILLLDDQGYIFNIEDGDLRITNDSMVLMKGKLENGLSLL*GRTSMDTADAIYIRCNLVSS 393
Query: 418 KLWHLRLGHVSERGLVELAKQGLL 441
+ R+GHVS+ G+ +L G L
Sbjct: 394 RSSAYRMGHVSKGGIKKLNTIGAL 465
>AJ497569 weakly similar to PIR|T04833|T04 hypothetical protein F21P8.50 -
Arabidopsis thaliana, partial (4%)
Length = 723
Score = 37.0 bits (84), Expect = 0.049
Identities = 19/58 (32%), Positives = 35/58 (59%)
Frame = +2
Query: 1211 HCDSQSAIHLANHQIYHERTKHINIRLHFVRDMIETKEIKVEKVASEENPADIFTKSL 1268
+CD+ SA+H+A + ++HERT H + V+ ++ +++ AS++ PA TK L
Sbjct: 290 YCDNISALHIAANMVFHERT*HRETDPYIVQG---SRMLQLMPSASKDQPAYSLTKPL 454
>BG647824 weakly similar to PIR|G96722|G96 hypothetical protein F20P5.25
[imported] - Arabidopsis thaliana, partial (5%)
Length = 721
Score = 37.0 bits (84), Expect = 0.049
Identities = 18/48 (37%), Positives = 29/48 (59%), Gaps = 1/48 (2%)
Frame = -3
Query: 1210 IHCDSQSAI-HLANHQIYHERTKHINIRLHFVRDMIETKEIKVEKVAS 1256
++CD+QSA H+A + + ERTKHI + H VR ++ K + + S
Sbjct: 284 LYCDNQSAARHIAANSSFLERTKHIELDCHIVRVKLQLKLFHILHILS 141
>TC81207 similar to GP|21322752|dbj|BAB78536. cold shock protein-1 {Triticum
aestivum}, partial (39%)
Length = 630
Score = 36.2 bits (82), Expect = 0.084
Identities = 28/108 (25%), Positives = 45/108 (40%), Gaps = 6/108 (5%)
Frame = +3
Query: 174 EEVQATLITKELTKFKDLKVDD-SGEGLNVSRGRNQNRGKGKGKNSKSKSRSKGDGNKTK 232
+ V+ T+ + K K + V GE L V + + + G G G+ + R G G
Sbjct: 186 DRVEFTIADGDNGKTKAVDVTGPKGEPLQVRQ--DNHGGGGGGRGFRGGERRNGGGG--- 350
Query: 233 YKCFICHNPGHFKKDCP-----ERKDNGGGNPSVQLASKDEGCESAGA 275
C+ C + GH +DC +R D GG +D C + G+
Sbjct: 351 --CYTCGDTGHIARDCDRSDRNDRNDRSGGGGG---GDRDRACYTCGS 479
>TC83624 homologue to PIR|G84581|G84581 copia-like retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(1%)
Length = 831
Score = 34.7 bits (78), Expect = 0.24
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 1210 IHCDSQSAIHLANHQIYHERTKH 1232
I+C +Q +++A +Q+YHERTKH
Sbjct: 482 IYCVNQITLYIAKNQVYHERTKH 550
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.343 0.153 0.518
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,360,661
Number of Sequences: 36976
Number of extensions: 583444
Number of successful extensions: 5208
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 2087
Number of HSP's successfully gapped in prelim test: 253
Number of HSP's that attempted gapping in prelim test: 2969
Number of HSP's gapped (non-prelim): 2547
length of query: 1283
length of database: 9,014,727
effective HSP length: 107
effective length of query: 1176
effective length of database: 5,058,295
effective search space: 5948554920
effective search space used: 5948554920
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 64 (29.3 bits)
Medicago: description of AC135504.5