BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135504.3 + phase: 0
(166 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF003873 similar to GP|14715222|em putative polyprotein {Cicer a... 203 3e-53
BG644699 similar to PIR|T07863|T078 probable polyprotein - pinea... 60 3e-10
BG587176 weakly similar to PIR|G84493|G84 probable retroelement ... 55 1e-08
BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis t... 31 0.26
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr... 28 1.3
CA858686 homologue to GP|8489871|gb| DEAD box protein P68 {Pisum... 28 2.2
TC92923 similar to GP|6466937|gb|AAF13073.1| putative retroeleme... 28 2.2
BI266140 similar to GP|20521428|db putative tryptophanyl-tRNA sy... 27 3.8
BE998730 27 3.8
TC90052 similar to PIR|D86465|D86465 probable integral membrane ... 26 8.4
TC87263 similar to GP|9759298|dbj|BAB09804.1 emb|CAB82953.1~gene... 26 8.4
TC76794 similar to GP|7416846|dbj|BAA94084.1 NAD-dependent sorbi... 26 8.4
>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
partial (82%)
Length = 559
Score = 203 bits (516), Expect = 3e-53
Identities = 100/125 (80%), Positives = 110/125 (88%)
Frame = +2
Query: 41 GVRRALKSRKLTPKFIGPYQISERVGTVAYRVGLPTHLSNLHDVFHVSQLQKYVADPSHV 100
GV RALKS+KLT +FIGPYQISERVGTVAYRVGLP HL NLHDVFHVSQL+KYV DPSHV
Sbjct: 2 GVGRALKSKKLTVRFIGPYQISERVGTVAYRVGLPPHLLNLHDVFHVSQLRKYVPDPSHV 181
Query: 101 IPREDVQVRDNLTVETSPLRIEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDS 160
I +DVQVRDNLTVET P+RI+DR+VK LRGK+IPLV+VVW GESLTWELESKM +S
Sbjct: 182 IQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVRVVWDRANGESLTWELESKMVES 361
Query: 161 YPESF 165
YPE F
Sbjct: 362 YPELF 376
>BG644699 similar to PIR|T07863|T078 probable polyprotein - pineapple
retrotransposon dea1 (fragment), partial (5%)
Length = 231
Score = 60.5 bits (145), Expect = 3e-10
Identities = 30/73 (41%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = +2
Query: 30 DHVFLRVTPMT-GVRRALKSRKLTPKFIGPYQISERVGTVAYRVGLPTHLSNLHDVFHVS 88
+ V L+V P G R K KL+ ++IGP+++ +R+G VAY + LP LS +H VFHVS
Sbjct: 2 EQVLLKVLPTERGDCRFGKRGKLSLRYIGPFEVIKRIGEVAYELALPPGLSGVHPVFHVS 181
Query: 89 QLQKYVADPSHVI 101
++Y D +++I
Sbjct: 182 MFKRYHGDGNYII 220
>BG587176 weakly similar to PIR|G84493|G84 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana, partial
(1%)
Length = 729
Score = 55.1 bits (131), Expect = 1e-08
Identities = 26/54 (48%), Positives = 35/54 (64%)
Frame = -1
Query: 112 LTVETSPLRIEDREVKKLRGKDIPLVKVVWGGVTGESLTWELESKMRDSYPESF 165
L +ET P+RI DR K +R K I +VK+VW E +TWE E++M+ YPE F
Sbjct: 717 LDLETRPVRILDRMEKAMRKKPIQMVKIVWDCSGREEITWETEARMKADYPEWF 556
>BF647164 weakly similar to GP|6691191|gb F7F22.15 {Arabidopsis thaliana},
partial (6%)
Length = 469
Score = 30.8 bits (68), Expect = 0.26
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +1
Query: 4 EKMKASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRALKSRKLTPKFIGPYQISE 63
E K R K +HD+R EF+EG+ V L R L KL + GP+Q+
Sbjct: 142 ENAKIYKERTKKWHDRRIIRREFREGELVLL-----FNSRLKLFPGKLRSHWSGPFQVKN 306
Query: 64 RVGTVAYRV 72
+ + A V
Sbjct: 307 VMPSGAVEV 333
>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
sativa (japonica cultivar-group)}, partial (7%)
Length = 674
Score = 28.5 bits (62), Expect = 1.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 14 KSYHDKRRKALEFQEGDHVFLRVTP 38
K DK+R+ EFQ G+HV +++ P
Sbjct: 403 KHQADKKRRHFEFQLGEHVLVKLQP 477
>CA858686 homologue to GP|8489871|gb| DEAD box protein P68 {Pisum sativum},
partial (31%)
Length = 598
Score = 27.7 bits (60), Expect = 2.2
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = +2
Query: 7 KASHSRQKSYHDKRRKALEFQEGDHVFLRVTPMTGVRRA--LKSRKLTPKFIGPYQISER 64
++ R+ + HD R + V R +TGV L K T +I + R
Sbjct: 308 RSQSEREAALHDFRSSSTSILVATDVASRGLDVTGVSHVINLDLPKTTEDYIHRIGRTGR 487
Query: 65 VGTVAYRVGLPTHLSNLHDVFHVSQLQKYVAD 96
G+ G+ T D+F VS ++K +AD
Sbjct: 488 AGST----GIATSFYTDRDMFLVSNIRKAIAD 571
>TC92923 similar to GP|6466937|gb|AAF13073.1| putative retroelement pol
polyprotein {Arabidopsis thaliana}, partial (1%)
Length = 625
Score = 27.7 bits (60), Expect = 2.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 76 THLSNLHDVFHVSQLQKYVADP 97
T S +H +FHVSQL++ V P
Sbjct: 219 TQTSTIHSIFHVSQLKRAVWGP 284
>BI266140 similar to GP|20521428|db putative tryptophanyl-tRNA synthetase
{Oryza sativa (japonica cultivar-group)}, partial (38%)
Length = 610
Score = 26.9 bits (58), Expect = 3.8
Identities = 12/37 (32%), Positives = 20/37 (53%)
Frame = +1
Query: 46 LKSRKLTPKFIGPYQISERVGTVAYRVGLPTHLSNLH 82
L +L+P+F P Q + +V R+GLP + +H
Sbjct: 193 LSRNELSPEFNLPVQFTLETTSVPSRIGLPFSMCTIH 303
>BE998730
Length = 820
Score = 26.9 bits (58), Expect = 3.8
Identities = 14/42 (33%), Positives = 19/42 (44%), Gaps = 6/42 (14%)
Frame = +1
Query: 127 KKLRGKDIPLVKVV------WGGVTGESLTWELESKMRDSYP 162
K+ RGK P+ + WG SL W + K+ SYP
Sbjct: 592 KQTRGKQFPVRHTLFNMFKPWGVFVQNSLHWVMAKKLDGSYP 717
>TC90052 similar to PIR|D86465|D86465 probable integral membrane protein
[imported] - Arabidopsis thaliana, partial (42%)
Length = 1180
Score = 25.8 bits (55), Expect = 8.4
Identities = 14/36 (38%), Positives = 19/36 (51%)
Frame = +2
Query: 113 TVETSPLRIEDREVKKLRGKDIPLVKVVWGGVTGES 148
TV + ED ++ D+ V VV+GGVTG S
Sbjct: 533 TVGRAMSSYEDEAYDIMKSLDVDYVLVVFGGVTGYS 640
>TC87263 similar to GP|9759298|dbj|BAB09804.1
emb|CAB82953.1~gene_id:MPH15.5~strong similarity to
unknown protein {Arabidopsis thaliana}, partial (65%)
Length = 2229
Score = 25.8 bits (55), Expect = 8.4
Identities = 12/31 (38%), Positives = 18/31 (57%), Gaps = 1/31 (3%)
Frame = +2
Query: 17 HDKRRKALEF-QEGDHVFLRVTPMTGVRRAL 46
HDK K ++ QEG HV+ + + RRA+
Sbjct: 1352 HDKTSKGKDYYQEGSHVYDELNVLEAFRRAI 1444
>TC76794 similar to GP|7416846|dbj|BAA94084.1 NAD-dependent sorbitol
dehydrogenase {Prunus persica}, partial (93%)
Length = 1691
Score = 25.8 bits (55), Expect = 8.4
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -2
Query: 79 SNLHDVFHVSQLQKYVADPSHVIPREDVQVRDNLT 113
SNL ++FHVS + YV +P++ E R+NLT
Sbjct: 1690 SNLINIFHVS*FKVYVPNPTN----ET*ITRNNLT 1598
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.318 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,387,236
Number of Sequences: 36976
Number of extensions: 50658
Number of successful extensions: 253
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of query: 166
length of database: 9,014,727
effective HSP length: 89
effective length of query: 77
effective length of database: 5,723,863
effective search space: 440737451
effective search space used: 440737451
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC135504.3