TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135504.16 - phase: 0 /pseudo
         (343 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci...   281  3e-76
AL366725                                                               63  4e-14
TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA PO...    50  2e-06
BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent vir...    49  4e-06
TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulch...    47  8e-06
TC86123 homologue to PIR|S71770|S71770 calcium-dependent protein...    28  3.9
TC92636 homologue to GP|15042313|gb|AAK82093.1 232R {Chilo iride...    28  5.1
BF006147 similar to GP|12322790|gb| unknown protein; 108050-1057...    28  5.1
TC90504 similar to PIR|T48329|T48329 hypothetical protein F15A17...    28  6.7
BF648288 homologue to GP|19918388|gb| ribosomal protein L1p {Met...    27  8.8

>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
           arietinum}, partial (8%)
          Length = 516

 Score =  281 bits (719), Expect = 3e-76
 Identities = 135/170 (79%), Positives = 146/170 (85%)
 Frame = +2

Query: 54  MAGRNDPAIAAALEAVA*AVGQQPNAAAGNDGVRMLETFLRNHPPTFKGRYDPDGTQKWL 113
           M G +D A+ AALEAVA AV Q P    G+DG RMLETFLRNHPPTFKGRY PDG  KWL
Sbjct: 2   MTGSSDAALVAALEAVAQAVQQLPKVDTGSDGTRMLETFLRNHPPTFKGRYAPDGA*KWL 181

Query: 114 KEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQDGAVVTWAVFRREFLNRY 173
           KE+ERIFRVMQC E QKV+FGTHMLAEEADDWW+SLLPVLEQD AVVTWA+FR+EFL RY
Sbjct: 182 KEIERIFRVMQCFETQKVQFGTHMLAEEADDWWISLLPVLEQDDAVVTWAMFRKEFLGRY 361

Query: 174 FPEDVRGKNEIEFLELKHGDMSVTKYAAKFVELAKFYPYYTAEIVEFSKC 223
           FPEDVRGK EIEFLELK GDMSVT+YAAKFVELA FYP+Y+AE  EFSKC
Sbjct: 362 FPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELATFYPHYSAETAEFSKC 511


>AL366725 
          Length = 485

 Score = 63.2 bits (152), Expect(2) = 4e-14
 Identities = 50/116 (43%), Positives = 63/116 (54%)
 Frame = +1

Query: 228 EWLEG*HQESHWLSENKKLL*FDK*LQDL*GGHESSLQGDE*TQRQGTTESSEAV*CSC* 287
           EW E  HQE + +       *F + LQ+L GG+  S QG E* + QG  ES  A+*C C*
Sbjct: 61  EWFEARHQEGNRIPTAPSFP*FSEYLQNLRGGY*GS*QGCE*AEDQGPIESP*AL*CPC* 240

Query: 288 QG*AEVK**EEAQEERCSYEYCLLQV**EGP*E*CL*QR*EEVLQVWSERTHSS*L 343
            G  E   *  + EE CS   CL Q+  E P E*CL  R +E+  V  E ++ S*L
Sbjct: 241 *GQTENGR**AS*EEGCSCGDCLFQLWRERPQE*CLS*RDQEMCPV*QEGSYCS*L 408



 Score = 32.0 bits (71), Expect(2) = 4e-14
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +2

Query: 208 KFYPYYTAEIVEFSKC 223
           KFYP+Y AE  EFSKC
Sbjct: 2   KFYPHYAAETAEFSKC 49


>TC87383 similar to GP|19168656|emb|CAD26175. DNA-DIRECTED RNA POLYMERASE II
           {Encephalitozoon cuniculi}, partial (0%)
          Length = 1247

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = -2

Query: 98  PTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQDG 157
           P F+G   PD    WL+ +ER+F+  +  E QKV+     L + A  WW ++    +++G
Sbjct: 724 PDFEGNLQPDDLLDWLQIMERLFKYKEVLEEQKVKIVAAKLKKLASIWWENVKRRRKREG 545

Query: 158 --AVVTWAVFRREFLNRYFP 175
              + TW   R++   +Y P
Sbjct: 544 KSKIKTWEKMRQKLTRKYLP 485


>BG647713 homologue to GP|15042313|gb| 232R {Chilo iridescent virus}, partial
           (1%)
          Length = 726

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 24/78 (30%), Positives = 39/78 (49%), Gaps = 2/78 (2%)
 Frame = +2

Query: 98  PTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQDG 157
           P F G+  PD    WL+ +ER+F+  + +E QKV+     L + A  WW +L      +G
Sbjct: 347 PDF*GKLQPDEFVDWLQTIERVFKYKEVAEEQKVKIVAAKLKKHASIWWKNLKRKRNCEG 526

Query: 158 --AVVTWAVFRREFLNRY 173
              + TW   R++   +Y
Sbjct: 527 KSKIKTWDKMRQKLTRKY 580


>TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulchellus},
           partial (7%)
          Length = 2304

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = +2

Query: 98  PTFKGRYDPDGTQKWLKEVERIFRVMQCSEVQKVRFGTHMLAEEADDWWVSLLPVLEQDG 157
           P F+G    D    WL+ +ER+F   +  E QKV+     L + A  WW +L    +++G
Sbjct: 629 PDFEGNLQLDDFLDWLQTIERVFEYKEVPEEQKVKIVAAKLKKHALIWWENLKRRRKREG 808

Query: 158 --AVVTWAVFRREFLNRYFP 175
              + TW   R++   +Y P
Sbjct: 809 KSKIKTWDKMRQKLTRKYLP 868


>TC86123 homologue to PIR|S71770|S71770 calcium-dependent protein kinase (EC
           2.7.1.-) - mung bean, complete
          Length = 2448

 Score = 28.5 bits (62), Expect = 3.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 37  CCLCCCSELLFLM*NFEMAG 56
           CC CCC   LF + N + AG
Sbjct: 363 CCCCCCQR*LFALKNGQQAG 304


>TC92636 homologue to GP|15042313|gb|AAK82093.1 232R {Chilo iridescent
           virus}, partial (1%)
          Length = 772

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 98  PTFKGRYDPDGTQKWLKEVERIF 120
           P F+G   PD    WL+ +ER+F
Sbjct: 438 PDFEGELQPDEFVDWLQAIERVF 506


>BF006147 similar to GP|12322790|gb| unknown protein; 108050-105786
           {Arabidopsis thaliana}, partial (11%)
          Length = 551

 Score = 28.1 bits (61), Expect = 5.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 83  NDGVRMLETFLRNHPPTFKGRYDPDGTQKWLKEVERI 119
           NDG+++LE FL    P     YD    Q W+   + +
Sbjct: 199 NDGLQILEVFLPKEHPQLHLTYDEHDIQFWISSQQHM 89


>TC90504 similar to PIR|T48329|T48329 hypothetical protein F15A17.110 -
           Arabidopsis thaliana, partial (54%)
          Length = 611

 Score = 27.7 bits (60), Expect = 6.7
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = +3

Query: 135 THMLAEEADDW-----WVSLLPVLEQDGAVVTWAVFRREFLNRYF 174
           TH+  E  D       W+SL+PV    G   +  +FRRE    +F
Sbjct: 123 THVRYERGDPLGHFLAWISLIPVFISFGGFFSHFIFRREIQTIFF 257


>BF648288 homologue to GP|19918388|gb| ribosomal protein L1p
          {Methanosarcina acetivorans str. C2A} [Methanosarcina
          acetivorans C2A], partial (5%)
          Length = 181

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 31 IECQL*CCLCCCSEL 45
          IE ++*CC CCC +L
Sbjct: 77 IETEM*CC*CCCCDL 121


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.355    0.158    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,856,952
Number of Sequences: 36976
Number of extensions: 143081
Number of successful extensions: 2864
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1817
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 2242
length of query: 343
length of database: 9,014,727
effective HSP length: 97
effective length of query: 246
effective length of database: 5,428,055
effective search space: 1335301530
effective search space used: 1335301530
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 59 (27.3 bits)