TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135416.5 + phase: 0 /pseudo
         (653 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644741                                                               69  6e-12
BG580885                                                               57  2e-08
AL366605                                                               46  5e-05
BE999414                                                               34  0.20
TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulch...    32  0.59
TC77948 similar to PIR|C85360|C85360 hypothetical protein AT4g30...    24  5.2
TC80457 similar to GP|6682258|gb|AAF23310.1| putative RNA helica...    29  6.5
AL375831                                                               28  8.5

>BG644741 
          Length = 735

 Score = 68.9 bits (167), Expect = 6e-12
 Identities = 32/84 (38%), Positives = 46/84 (54%)
 Frame = -2

Query: 33  LRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRALLARFFPPSKTAKLRDQIMRFNQKD 92
           L L +FP SL   A  WF  L   SI +W+ +R   LAR++P SK     D++  F    
Sbjct: 593 LGLRVFPLSLMGEADIWFTELPYNSIFTWNQLRDVFLARYYPVSKKLNHNDRVNNFVALP 414

Query: 93  GESLYEAWERFKEMLRLCPHHGLE 116
           GES+  +W+RF   LR  P+H ++
Sbjct: 413 GESVSSSWDRFTSFLRSVPNHRID 342


>BG580885 
          Length = 609

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 30/115 (26%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
 Frame = +3

Query: 4   FSGSPTEDPNLHISSFLRLSGTIKENQEALRLHLFPFSLRDRASAWFH-SLEVGSIT-SW 61
           F G+P E P  H+S F ++      +   ++  +FP +L + ++ W+  ++E   I+ SW
Sbjct: 54  FRGTPNESPITHLSRFNKVCRANNASSVEMQKKIFPVTLEEESALWYDLNIEPYYISLSW 233

Query: 62  DDMRRALLARFFPPSKTAKLRDQIMRFNQKDGESLYEAWERFKEMLRLCPHHGLE 116
           D+++ + L  ++      +LR ++M  +Q + E +   + R + +L+  P HGLE
Sbjct: 234 DEIKLSFLQAYYEIEPVEELRSELMGIHQGEKERVRSYFLRLQWILKRWPEHGLE 398


>AL366605 
          Length = 422

 Score = 45.8 bits (107), Expect = 5e-05
 Identities = 26/93 (27%), Positives = 49/93 (51%)
 Frame = -3

Query: 12  PNLHISSFLRLSGTIKENQEALRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRALLAR 71
           P  HI  ++R  G  K+N ++L +H F  SL + A+ W+ SL    I ++D++  A  + 
Sbjct: 291 PQNHIIKYVRKMGNYKDN-DSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDELAAAFKSH 115

Query: 72  FFPPSKTAKLRDQIMRFNQKDGESLYEAWERFK 104
           +   ++    R+ +   +QK  ES  E  +R++
Sbjct: 114 YGFNTRLKPNREFLRSLSQKKEESFREYAQRWR 16


>BE999414 
          Length = 613

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 20/64 (31%), Positives = 32/64 (49%)
 Frame = +3

Query: 9  TEDPNLHISSFLRLSGTIKENQEALRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRAL 68
          T DP+ H+ + + +  T +  + A++  LF  +LR  A  WF +L   SI SW D+    
Sbjct: 27 T*DPDEHMEN-IEVVLTYRSVRGAVKCKLFVTTLRRGAMTWFKNLRRNSIGSWGDLCHEF 203

Query: 69 LARF 72
             F
Sbjct: 204TTHF 215


>TC87382 similar to EGAD|146423|156195 vitellogenin {Anolis pulchellus},
           partial (7%)
          Length = 2304

 Score = 32.3 bits (72), Expect = 0.59
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
 Frame = +2

Query: 8   PTEDPNLHISSFLRLSGTI------KENQEALRLHLFPFSLRDRASAWFHSLE------- 54
           P  + NL +  FL    TI      KE  E  ++ +    L+  A  W+ +L+       
Sbjct: 629 PDFEGNLQLDDFLDWLQTIERVFEYKEVPEEQKVKIVAAKLKKHALIWWENLKRRRKREG 808

Query: 55  VGSITSWDDMRRALLARFFPP 75
              I +WD MR+ L  ++ PP
Sbjct: 809 KSKIKTWDKMRQKLTRKYLPP 871


>TC77948 similar to PIR|C85360|C85360 hypothetical protein AT4g30780
            [imported] - Arabidopsis thaliana, partial (28%)
          Length = 1916

 Score = 24.3 bits (51), Expect(2) = 5.2
 Identities = 15/43 (34%), Positives = 19/43 (43%)
 Frame = -1

Query: 30   QEALRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRALLARF 72
            Q A +L  F  S  +   AW    E+G + SW     AL  RF
Sbjct: 1151 QIAEKLIRFRSSAPETFDAWGFITELGEVISWKLFSTALPIRF 1023



 Score = 23.1 bits (48), Expect(2) = 5.2
 Identities = 8/24 (33%), Positives = 13/24 (53%)
 Frame = -2

Query: 100  WERFKEMLRLCPHHGLEKVAYSPH 123
            W +  ++  L PHH ++K   S H
Sbjct: 1012 WRKMIDLQILIPHHAVQKSQLSLH 941


>TC80457 similar to GP|6682258|gb|AAF23310.1| putative RNA helicase
           {Arabidopsis thaliana}, partial (28%)
          Length = 1425

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 25/97 (25%), Positives = 41/97 (41%), Gaps = 3/97 (3%)
 Frame = +1

Query: 23  SGTIKENQEA-LRLHLFPFSLRDRASAWFHSLEVGSITSWDDMRRALLARFFPPSKTAKL 81
           S  + E+ EA L ++ FP + R + +   H   +G I+ W         +FFPP K A  
Sbjct: 655 SEALPEHYEAELEINDFPQNARWKVT---HKETLGPISEWTGAAITTRGQFFPPGKVAGP 825

Query: 82  RDQ--IMRFNQKDGESLYEAWERFKEMLRLCPHHGLE 116
            D+   +       +S+  A    K +L    H  L+
Sbjct: 826 GDRKLYLFIEGPSEQSVKRAKAELKRVLEDITHQALQ 936


>AL375831 
          Length = 467

 Score = 28.5 bits (62), Expect = 8.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 26  IKENQEALRLHLFPFSLRDRASAWFHSLEVGSITSWDD 63
           I +  ++L +H F  SL + A+ W+ SL    I ++D+
Sbjct: 354 ITKTNDSLMIHCFQDSLMEDAAEWYTSLSKNDIHTFDE 467


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.365    0.161    0.617 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,947,044
Number of Sequences: 36976
Number of extensions: 329665
Number of successful extensions: 3732
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 2628
Number of HSP's gapped (non-prelim): 1286
length of query: 653
length of database: 9,014,727
effective HSP length: 102
effective length of query: 551
effective length of database: 5,243,175
effective search space: 2888989425
effective search space used: 2888989425
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 62 (28.5 bits)