TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135319.3 + phase: 0 
         (41 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC91176 weakly similar to GP|21594024|gb|AAM65942.1 unknown {Ara...    80  2e-16
BI308546 similar to GP|15912325|gb| At1g60710/F8A5_23 {Arabidops...    26  3.8
TC85575 similar to PIR|D86410|D86410 protein F3M18.16 [imported]...    25  5.0
TC81713                                                                25  6.6
TC77904 homologue to GP|21617984|gb|AAM67034.1 unknown {Arabidop...    25  6.6
BM778992 similar to GP|21594024|gb| unknown {Arabidopsis thalian...    25  6.6

>TC91176 weakly similar to GP|21594024|gb|AAM65942.1 unknown {Arabidopsis
           thaliana}, partial (17%)
          Length = 1082

 Score = 79.7 bits (195), Expect = 2e-16
 Identities = 41/41 (100%), Positives = 41/41 (100%)
 Frame = +3

Query: 1   MVLVLTTNTTTGTFSAATTSLHANFVLMVLLLVVIINYFSA 41
           MVLVLTTNTTTGTFSAATTSLHANFVLMVLLLVVIINYFSA
Sbjct: 249 MVLVLTTNTTTGTFSAATTSLHANFVLMVLLLVVIINYFSA 371


>BI308546 similar to GP|15912325|gb| At1g60710/F8A5_23 {Arabidopsis
           thaliana}, partial (10%)
          Length = 825

 Score = 25.8 bits (55), Expect = 3.8
 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = +2

Query: 17  ATTSLHAN--FVLMVLLLVVIINY 38
           A T +H N  FVL++++LVV+ NY
Sbjct: 401 AFTEIHVNYFFVLLMIILVVLRNY 472


>TC85575 similar to PIR|D86410|D86410 protein F3M18.16 [imported] -
           Arabidopsis thaliana, partial (15%)
          Length = 1225

 Score = 25.4 bits (54), Expect = 5.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 3   LVLTTNTTTGTFSAATTSLHANFVLMVLLLVVII 36
           L LT      TF A    +++NFV++V+LLVV++
Sbjct: 878 LPLTIVVIVVTFEAVFV-INSNFVVVVILLVVVV 780


>TC81713 
          Length = 736

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 13/29 (44%), Positives = 17/29 (57%)
 Frame = +2

Query: 4  VLTTNTTTGTFSAATTSLHANFVLMVLLL 32
          V+ TNTT G+    TTS    F++  LLL
Sbjct: 41 VVNTNTTKGSVY*KTTSFAVCFIVEALLL 127


>TC77904 homologue to GP|21617984|gb|AAM67034.1 unknown {Arabidopsis
           thaliana}, complete
          Length = 695

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 22  HANFVLMVLLLVVIINYFS 40
           H NF+L++ +L  IINY S
Sbjct: 478 HVNFLLLLKILNYIINYLS 422


>BM778992 similar to GP|21594024|gb| unknown {Arabidopsis thaliana}, partial
           (38%)
          Length = 682

 Score = 25.0 bits (53), Expect = 6.6
 Identities = 15/37 (40%), Positives = 22/37 (58%), Gaps = 5/37 (13%)
 Frame = -1

Query: 1   MVLVLTTNTTTGTF-----SAATTSLHANFVLMVLLL 32
           +V+VLTTNT+ G+F     S   TS   NF+  + L+
Sbjct: 493 IVVVLTTNTSDGSFVPESSSGDETSNGENFITKIGLV 383


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.329    0.134    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,053,997
Number of Sequences: 36976
Number of extensions: 7327
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of query: 41
length of database: 9,014,727
effective HSP length: 17
effective length of query: 24
effective length of database: 8,386,135
effective search space: 201267240
effective search space used: 201267240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.6 bits)