TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135234.2 - phase: 0 /pseudo
         (1380 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF003873 similar to GP|14715222|em putative polyprotein {Cicer a...   239  4e-63
TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci...    94  4e-19
AL366725                                                               94  5e-19
BG644699 similar to PIR|T07863|T078 probable polyprotein - pinea...    63  7e-10
BG587176 weakly similar to PIR|G84493|G84 probable retroelement ...    56  8e-08
BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, pa...    46  5e-05
TC77772 similar to GP|22136300|gb|AAM91228.1 unknown protein {Ar...    32  2.2
BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycopro...    31  3.8
TC88073 weakly similar to GP|5777632|emb|CAB53493.1 CAA303720.1 ...    30  5.0
TC90237 similar to GP|20466544|gb|AAM20589.1 unknown protein {Ar...    30  8.4

>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
            partial (82%)
          Length = 559

 Score =  239 bits (611), Expect = 4e-63
 Identities = 120/134 (89%), Positives = 123/134 (91%)
 Frame = +2

Query: 1246 GVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVSQLRKYVPDPSHV 1305
            GVGRALKSKKLT +FIGPYQISERVGTVAYRVGLPPHL NLHDVFHVSQLRKYVPDPSHV
Sbjct: 2    GVGRALKSKKLTVRFIGPYQISERVGTVAYRVGLPPHLLNLHDVFHVSQLRKYVPDPSHV 181

Query: 1306 IHKGDVQVRDNLTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRES 1365
            I   DVQVRDNLTVETLP+RIDDRKVK+LRGKEIPLVRVVW  A GESLTWELESKM ES
Sbjct: 182  IQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVRVVWDRANGESLTWELESKMVES 361

Query: 1366 YPELFP*GKISRTK 1379
            YPELF *GK SRTK
Sbjct: 362  YPELFA*GKFSRTK 403


>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
           arietinum}, partial (8%)
          Length = 516

 Score = 94.0 bits (232), Expect = 4e-19
 Identities = 51/89 (57%), Positives = 64/89 (71%)
 Frame = +3

Query: 1   RTC*RRRLMTGG*VCYPCLRRTVRW*PGLYSGGNS*IGIFRKMSVVRRKSSFWS*NKVTC 60
           RTC* +R M GG VC     R + W*PG  SG +   GIF++MS VR++ +FWS*N+VTC
Sbjct: 246 RTC*LKRPMIGGLVCCLFWSRMMLW*PGPCSGRSFWAGIFQRMSGVRKRLNFWS*NRVTC 425

Query: 61  LSQSMLRSSWN*LSSTLSILRRQLNSPNV 89
           LSQSML+S WN   STL  +RRQL+SP+V
Sbjct: 426 LSQSMLQSLWNLPHSTLITVRRQLSSPSV 512


>AL366725 
          Length = 485

 Score = 93.6 bits (231), Expect = 5e-19
 Identities = 71/160 (44%), Positives = 91/160 (56%)
 Frame = +3

Query: 74  SSTLSILRRQLNSPNV*NSRMG*GPISRGPLAIRRSELFLSW*AAAESMRKIQKLITR** 133
           SS  ++L R L+S N  +SRM *GP SRG      SE  L  *  AES R+I +L+TR *
Sbjct: 3   SSIRTMLLRLLSSRNASSSRMV*GPTSRGQSDTNSSEFSLI**IPAESTRRILRLMTRL* 182

Query: 134 VSGGVRDNRVILSRTVPLLTRESND*MMREGPRGEMLLLR*FAISVARKATKVMFVPKMR 193
           +SG  R NRV LS  VPLL R + +  M    R  MLL R    ++ARKAT+VMFV K  
Sbjct: 183 MSGRPRANRVALSLIVPLLIRANREWSMIGVLRRRMLLRRLSVSTMARKATRVMFVLKRS 362

Query: 194 RSASGVVRKDTHWLTARGVMLFVIIVMRRATSVHSALNQR 233
           R+ SGV R+    L A  ++L   I  +R   V +A + R
Sbjct: 363 RNVSGVTRRVIL*LIASEMILCASIATKRVILVPNASSLR 482


>BG644699 similar to PIR|T07863|T078 probable polyprotein - pineapple
            retrotransposon dea1 (fragment), partial (5%)
          Length = 231

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 31/73 (42%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
 Frame = +2

Query: 1235 DHVFLRVTPMT-GVGRALKSKKLTPKFIGPYQISERVGTVAYRVGLPPHLSNLHDVFHVS 1293
            + V L+V P   G  R  K  KL+ ++IGP+++ +R+G VAY + LPP LS +H VFHVS
Sbjct: 2    EQVLLKVLPTERGDCRFGKRGKLSLRYIGPFEVIKRIGEVAYELALPPGLSGVHPVFHVS 181

Query: 1294 QLRKYVPDPSHVI 1306
              ++Y  D +++I
Sbjct: 182  MFKRYHGDGNYII 220


>BG587176 weakly similar to PIR|G84493|G84 probable retroelement pol
            polyprotein [imported] - Arabidopsis thaliana, partial
            (1%)
          Length = 729

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 25/54 (46%), Positives = 37/54 (68%)
 Frame = -1

Query: 1317 LTVETLPLRIDDRKVKSLRGKEIPLVRVVWGGATGESLTWELESKMRESYPELF 1370
            L +ET P+RI DR  K++R K I +V++VW  +  E +TWE E++M+  YPE F
Sbjct: 717  LDLETRPVRILDRMEKAMRKKPIQMVKIVWDCSGREEITWETEARMKADYPEWF 556


>BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, partial (33%)
          Length = 560

 Score = 46.2 bits (108), Expect(2) = 5e-05
 Identities = 36/72 (50%), Positives = 43/72 (59%)
 Frame = +2

Query: 870 *TV*RLESCL*IVTSECEVGYVEDQ**FLE*YQRSATS*CQVCGFNGY**SS*G**FQG* 929
           *TV RLE  L* V +ECE+G VEDQ     *YQR +   C+V  FN + *S *  *F  *
Sbjct: 71  *TVQRLEFGL*SVATECEIGDVEDQQRIFG*YQRGSEGGCEVGRFNVWE*SD*RW*F*S* 250

Query: 930 *TRRVEVQRQNL 941
           *+R V V   N+
Sbjct: 251 *SRSVAVSG*NM 286



 Score = 20.0 bits (40), Expect(2) = 5e-05
 Identities = 6/9 (66%), Positives = 9/9 (99%)
 Frame = +3

Query: 848 CRCFE*EDV 856
           CRCF+*E++
Sbjct: 6   CRCFK*ENI 32


>TC77772 similar to GP|22136300|gb|AAM91228.1 unknown protein {Arabidopsis
           thaliana}, partial (62%)
          Length = 2554

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
 Frame = +2

Query: 258 VLVSLIVLL*LLL*TLMLLIVSLL*NVHISWV*LYLI*KER---WLLKLQLRVQELLLL 313
           +L+ LI++L L+L* ++LL++ L+    + W  L     +R   W L+L +R++ LLLL
Sbjct: 530 MLICLIIILGLIL*LVLLLLICLI--C*LRWNNLIFCRIQRVLIWFLRLCIRLERLLLL 700


>BQ137252 similar to GP|6523547|emb| hydroxyproline-rich glycoprotein DZ-HRGP
           {Volvox carteri f. nagariensis}, partial (10%)
          Length = 1067

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 29/85 (34%), Positives = 40/85 (46%), Gaps = 2/85 (2%)
 Frame = -1

Query: 171 LLR*FAISVARKA--TKVMFVPKMRRSASGVVRKDTHWLTARGVMLFVIIVMRRATSVHS 228
           +LR    S +R+A  T+   V   R S   + R       AR + L V ++ R + S  +
Sbjct: 899 ILRSLDASASRRALRTRRRAVRNERASTRALPRLAVFGARARALCLTVSVLTRPSASRAT 720

Query: 229 ALNQRRLELVGRCLL*LVRRLLMRT 253
           AL  RR     RCLL LVRR   R+
Sbjct: 719 ALRSRRSV---RCLLRLVRRAPFRS 654


>TC88073 weakly similar to GP|5777632|emb|CAB53493.1 CAA303720.1 protein
           {Oryza sativa}, partial (25%)
          Length = 1345

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 23/59 (38%), Positives = 34/59 (56%), Gaps = 4/59 (6%)
 Frame = +3

Query: 273 LMLLIVSLL*NVHISWV*LYLI*KERWLLKLQLRVQELLLLFV----*GVLYLCLVEIL 327
           L+LL VS+    + +WV +       WL+++   + + LLLF+    *GVLYLCL  IL
Sbjct: 456 LVLLFVSIGIGPNGNWVTISGF--SLWLIRVLWSLGQWLLLFLGV*G*GVLYLCLFSIL 626


>TC90237 similar to GP|20466544|gb|AAM20589.1 unknown protein {Arabidopsis
            thaliana}, partial (79%)
          Length = 1174

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 1041 CYLGFCG*VDEVSA--LYSDKYQFSGTSAGGDLHPCHCEVAWCSVEYC 1086
            CY G+C *  ++     +S    FS + AG D   C     WC   YC
Sbjct: 336  CYGGWCS*CWQILFD*FHSSNCTFSLSRAGEDEASCCGSTTWCHSRYC 479


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.369    0.167    0.626 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,875,848
Number of Sequences: 36976
Number of extensions: 675525
Number of successful extensions: 8394
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1813
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 6413
Number of HSP's gapped (non-prelim): 2462
length of query: 1380
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1272
effective length of database: 5,021,319
effective search space: 6387117768
effective search space used: 6387117768
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 64 (29.3 bits)