TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135233.1 + phase: 0 
         (87 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF520975 similar to GP|9757942|dbj GAMM1 protein-like {Arabidops...    60  1e-10
AL367559 similar to GP|12324441|gb| unknown protein; 11418-9170 ...    57  1e-09
TC80398 similar to GP|20521392|dbj|BAB91903. putative FtsH prote...    28  0.62
TC93050 similar to GP|8886934|gb|AAF80620.1| F2D10.25 {Arabidops...    28  0.81
BQ143784 weakly similar to SP|P33485|VNUA Probable nuclear antig...    27  1.4
TC76531 similar to SP|P13915|CVCA_PEA Convicilin precursor. [Gar...    26  2.3
AA660229                                                               26  3.1
BQ146782                                                               25  6.8
TC86550 similar to GP|15810601|gb|AAL07188.1 unknown protein {Ar...    24  8.9

>BF520975 similar to GP|9757942|dbj GAMM1 protein-like {Arabidopsis
           thaliana}, partial (45%)
          Length = 547

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +1

Query: 1   MKIDPPIKYVLYEDERSKQWRVQAVSVS 28
           MKIDPPIKYVLYEDERSKQWRVQAVSVS
Sbjct: 454 MKIDPPIKYVLYEDERSKQWRVQAVSVS 537


>AL367559 similar to GP|12324441|gb| unknown protein; 11418-9170
          {Arabidopsis thaliana}, partial (7%)
          Length = 328

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 27/27 (100%), Positives = 27/27 (100%)
 Frame = +3

Query: 61 FVHMSGFIGGNQTFEGALAMAKAALKM 87
          FVHMSGFIGGNQTFEGALAMAKAALKM
Sbjct: 3  FVHMSGFIGGNQTFEGALAMAKAALKM 83


>TC80398 similar to GP|20521392|dbj|BAB91903. putative FtsH protease {Oryza
           sativa (japonica cultivar-group)}, partial (26%)
          Length = 981

 Score = 28.1 bits (61), Expect = 0.62
 Identities = 24/90 (26%), Positives = 37/90 (40%), Gaps = 6/90 (6%)
 Frame = +2

Query: 4   DPPIKYVLYEDERSKQWRVQAVS------VSPDRFESRKALPSQWRGLRDDILSKESGIP 57
           DP      +E + S      A+S      V  DR +  + L +  RG+ + +  +ESGI 
Sbjct: 395 DPEAVIRAFESQPSLHTNSAALSEYVKALVKVDRLDESELLQTLRRGISNSVREEESGIG 574

Query: 58  GCVFVHMSGFIGGNQTFEGALAMAKAALKM 87
           G   +       G  T +G L  A A + M
Sbjct: 575 GLAVLRNV----GKSTKDGILGTAGAPIHM 652


>TC93050 similar to GP|8886934|gb|AAF80620.1| F2D10.25 {Arabidopsis
           thaliana}, partial (4%)
          Length = 800

 Score = 27.7 bits (60), Expect = 0.81
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 27  VSPDRFESRKALPSQWRGLRDDILSKESGIPGCVFVHMS 65
           ++    E  K   +Q+ GL  ++L  +SG+ G  F+H S
Sbjct: 757 LNESNLEKSKVFSNQFLGLCGELLELKSGVLGTEFIHWS 641


>BQ143784 weakly similar to SP|P33485|VNUA Probable nuclear antigen. [strain
           Kaplan  PRV] {Pseudorabies virus}, partial (2%)
          Length = 1022

 Score = 26.9 bits (58), Expect = 1.4
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 41  QWRGLRDDILSKE-SGIPGCVF 61
           +W G+R D +S+  +G+PGCVF
Sbjct: 345 RWAGVRRDGVSRGVAGVPGCVF 280


>TC76531 similar to SP|P13915|CVCA_PEA Convicilin precursor. [Garden pea]
           {Pisum sativum}, partial (86%)
          Length = 2217

 Score = 26.2 bits (56), Expect = 2.3
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +2

Query: 13  EDERSKQWRVQAVSVSPDRFESRKALPSQWRGLRDDILSKESGIPG 58
           +++R  QWR        +  E +K  P QWR  R      +   PG
Sbjct: 221 QEQRPGQWRPSHEREEDEEDEHQKRRPGQWRPTRGGRQEGQEQRPG 358


>AA660229 
          Length = 374

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 9   YVLYEDERSKQWRV 22
           YVLY+  RS+ WRV
Sbjct: 242 YVLYQSNRSRSWRV 283


>BQ146782 
          Length = 649

 Score = 24.6 bits (52), Expect = 6.8
 Identities = 17/37 (45%), Positives = 22/37 (58%), Gaps = 1/37 (2%)
 Frame = +3

Query: 21  RVQAVSVSPDRFESRKALPSQWRGLRDDILSKE-SGI 56
           R+Q    S  + +   ALP++ R L D ILSKE SGI
Sbjct: 222 RLQESGSSQQKRQKLSALPTEERILYDLILSKENSGI 332


>TC86550 similar to GP|15810601|gb|AAL07188.1 unknown protein {Arabidopsis
           thaliana}, partial (67%)
          Length = 1240

 Score = 24.3 bits (51), Expect = 8.9
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 25  VSVSPDRFESRKAL 38
           VS+SP+RF+SR AL
Sbjct: 832 VSLSPERFDSRAAL 791


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.320    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,554,102
Number of Sequences: 36976
Number of extensions: 27250
Number of successful extensions: 107
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of query: 87
length of database: 9,014,727
effective HSP length: 63
effective length of query: 24
effective length of database: 6,685,239
effective search space: 160445736
effective search space used: 160445736
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)