TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135231.7 + phase: 0 /pseudo
         (943 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG584442                                                               56  7e-08
TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative ret...    35  0.005
BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [impo...    32  0.88
AW980456                                                               30  4.4
TC80605 similar to PIR|S56716|S56716 protein kinase SPK-3 (EC 2....    30  5.7
BQ141780 similar to SP|P16059|PSBP Oxygen-evolving enhancer prot...    29  9.7

>BG584442 
          Length = 775

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 34/82 (41%), Positives = 47/82 (56%)
 Frame = +3

Query: 351 ENQFLEW*VSL*SRSRGYDKICFAGYSFLCDEYLSASHYLTRLN*KDDELLLVGQR*NNT 410
           +N FLE  + + S  RG D +C   + FLCDEY S S + +R N*KD E   +G     +
Sbjct: 381 KN*FLEKQMFVKSYVRGND*VCTPKHIFLCDEYFSPSKFSSR*N*KDYEYFFMGSCWRKS 560

Query: 411 KRDSLDELGEAFSTKDSRRYGF 432
           +R++LD LGE   T    R+GF
Sbjct: 561 QRNALDVLGEIVCT*KLWRHGF 626


>TC91765 weakly similar to GP|19881779|gb|AAM01180.1 Putative retroelement
           {Oryza sativa (japonica cultivar-group)}, partial (1%)
          Length = 625

 Score = 34.7 bits (78), Expect = 0.18
 Identities = 27/86 (31%), Positives = 43/86 (49%)
 Frame = +2

Query: 266 QS*QGSSTCYEAYSIHL*ISFWSSDQFTKV*NILQS*CS**PQS*HYRYSRRPTCVGHR* 325
           QS*+ S   YE +   +    W S   +++ +ILQ  CS*  +  H+ Y      VG+ *
Sbjct: 311 QS*RASCANYEKHPYSVRGRLW*SY*SSQIIDILQQECS*HFKDFHHIYFGGSIYVGYM* 490

Query: 326 IFGLTFYDRSRSKCYFCLHQGSCLAE 351
           +FG + +DR R    F  + G  +A+
Sbjct: 491 VFGTSVHDRQR*NNNFFFY*GWSVAK 568



 Score = 32.0 bits (71), Expect(2) = 0.005
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +1

Query: 184 YVRRISGLFCACKWYTGRSYYSRAGCPSRGSSLSVLVYYLC 224
           YV  I  L C+C    G SY +++   +RGSSL + +++LC
Sbjct: 100 YVCGIK*LLCSC*Q*CGGSYNTKSRFTTRGSSLPLYLHHLC 222



 Score = 26.9 bits (58), Expect(2) = 0.005
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +3

Query: 153 Y*QSL*SYGLELFEGCFE*DGFS*PLDSLDV 183
           Y*QSL*S  L L  G  + DG  *P+D LDV
Sbjct: 6   Y*QSL*SSRLRLS*GNHDQDGV**PVDLLDV 98


>BG447966 weakly similar to PIR|G96509|G96 protein F27F5.21 [imported] -
           Arabidopsis thaliana, partial (7%)
          Length = 687

 Score = 32.3 bits (72), Expect = 0.88
 Identities = 23/83 (27%), Positives = 36/83 (42%)
 Frame = +1

Query: 65  HCPYPKRFYAG*HEGLAPYSTL*CVIQNHFESVSKPVEESAA*MHFRQSIRLRPRTLDFR 124
           HCPYP R  +   +GL P   L C  +NH +  S+     +   +   + R RPR    R
Sbjct: 439 HCPYP*RKESEYSKGLPPN*PLQCCHENHHQGYSQQS*ADSPGCN*CGAERFRPRQAHHR 618

Query: 125 *CYGSN*GFTFYESQDARGRQIC 147
            C  S   F + + +    ++ C
Sbjct: 619 QCTDSMECFHWLKXKKKGKKESC 687


>AW980456 
          Length = 779

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = -1

Query: 582 MESGKAQTLLCS*CLQVMCIRTD*FIL*LATGVLVWYLESKSPTESQEFNLVHVSGLFT 640
           +E  KA  +LC  CL  +C  T  F L   +  LV  LE+ S +   + +L  V GLFT
Sbjct: 197 LEG*KAWEILCKECLSFLCRGTLRFFLPSPSR*LVRNLEA*STS*GSKLSLEDV*GLFT 21


>TC80605 similar to PIR|S56716|S56716 protein kinase SPK-3 (EC 2.7.1.-) -
           soybean, partial (25%)
          Length = 533

 Score = 29.6 bits (65), Expect = 5.7
 Identities = 14/29 (48%), Positives = 18/29 (61%)
 Frame = +1

Query: 701 RKLYFICWRLCRLN*NNICHLYYGVYGST 729
           R LYFICW    +N* +  H+ YG Y S+
Sbjct: 337 RHLYFICW----VN*KSPIHVNYGYYDSS 411


>BQ141780 similar to SP|P16059|PSBP Oxygen-evolving enhancer protein 2
           chloroplast precursor (OEE2), partial (43%)
          Length = 745

 Score = 28.9 bits (63), Expect = 9.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 878 TCPNLDALFPHVVLCSVLSFLTLGWSLLGDKPTW 911
           TCPN+    P   + S   FL+ G  LLG+KP++
Sbjct: 476 TCPNILTRSPSPTMASPEEFLSNGDYLLGNKPSF 577


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.365    0.165    0.642 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,849,043
Number of Sequences: 36976
Number of extensions: 614034
Number of successful extensions: 8264
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 303
Number of HSP's that attempted gapping in prelim test: 6346
Number of HSP's gapped (non-prelim): 2413
length of query: 943
length of database: 9,014,727
effective HSP length: 105
effective length of query: 838
effective length of database: 5,132,247
effective search space: 4300822986
effective search space used: 4300822986
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.6 bits)
S2: 63 (28.9 bits)