BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135230.10 - phase: 0
(548 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC82437 weakly similar to PIR|E71416|E71416 hypothetical protein... 321 5e-88
BI272054 similar to GP|15529153|gb AT4g23490/F16G20_190 {Arabido... 315 4e-86
BI310191 similar to GP|15529153|gb AT4g23490/F16G20_190 {Arabido... 249 1e-66
TC91618 similar to PIR|C86456|C86456 unknown protein [imported] ... 182 3e-46
TC92846 similar to GP|9758054|dbj|BAB08517.1 gene_id:MYC6.16~pir... 180 1e-45
TC90817 similar to PIR|E71416|E71416 hypothetical protein - Arab... 149 7e-42
CA917904 homologue to GP|19717681|gb| arsenite transport subunit... 60 3e-09
TC77387 similar to GP|15983396|gb|AAL11566.1 At1g51440/F5D21_19 ... 37 0.026
BE248780 similar to GP|5929884|gb|A nucleolin-related protein NR... 36 0.044
CB892282 weakly similar to GP|20804875|dbj putative serine/threo... 35 0.097
TC78476 homologue to SP|O22437|CHLD_PEA Magnesium-chelatase subu... 34 0.13
TC77638 similar to GP|20161455|dbj|BAB90379. ankyrin-like protei... 34 0.17
BG586056 32 0.82
AW690594 similar to GP|23498163|emb hypothetical protein {Plasmo... 32 0.82
AJ388952 similar to PIR|T04526|T045 hypothetical protein F16A16.... 30 1.8
TC87261 similar to GP|16648718|gb|AAL25551.1 AT5g64130/MHJ24_11 ... 30 2.4
TC86034 similar to GP|6815067|dbj|BAA90354.1 ESTs AU082210(C5365... 30 2.4
BQ143830 30 3.1
TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protei... 30 3.1
TC80981 similar to GP|8698730|gb|AAF78488.1| ESTs gb|Z18526 gb|... 30 3.1
>TC82437 weakly similar to PIR|E71416|E71416 hypothetical protein -
Arabidopsis thaliana, partial (42%)
Length = 1680
Score = 321 bits (822), Expect = 5e-88
Identities = 171/383 (44%), Positives = 247/383 (63%), Gaps = 6/383 (1%)
Frame = +1
Query: 128 QRQDTELKHIV-FGIAASSNLWNTRKEYIKIWWRPKQT-RGVVWLDQRVSTQRN-EGLPD 184
+++ T+L I+ GIA+S + W RKEY+K+W + +G V+LD + + LP
Sbjct: 547 KKKQTQL*MILGLGIASSKSSWTKRKEYVKLWGKNNNAMKGCVFLDSLPQNEDDPSSLPP 726
Query: 185 IRISDDTSKFRYTNRQGQRSALRISRVVTETLKLGLKDVRWFVMGDDDTVFVVDNVVRIL 244
+ +S+DTS+F+YT + G RSA+R++RVV ET+ L +V+W+V GDDDTVF +N+V+ L
Sbjct: 727 LCVSEDTSRFQYTCKGGLRSAIRVARVVAETVALNHSNVKWYVFGDDDTVFFPENLVKTL 906
Query: 245 SKYDHRHFYYVGSSSESHVQNIHFSYAMAYGGGGFAISYPLAVELATMQDRCIQRYPALY 304
SKYDH +YY+G+ SE + QN F + MA+GG GFAIS LA LA + D C++RYP LY
Sbjct: 907 SKYDHELWYYIGAHSEIYEQNRLFGFGMAFGGAGFAISSSLAKVLAKVFDSCLERYPHLY 1086
Query: 305 GSDDRMQACMAELGVPLTKEAGFHQYDVYGDLLGLLGAHPVAPLVSLHHLDVVQPIFPSM 364
GSD R+ +C+AELGV LT E GFHQ D+ G+ GLL AHPV PL+SLHH D PIFP+M
Sbjct: 1087GSDGRVYSCLAELGVGLTHEPGFHQVDLTGNTFGLLAAHPVTPLLSLHHPDYTDPIFPNM 1266
Query: 365 SRAQSIRHLMESINQDSSGIMQQSICYDKNRFWSISVSWGFMVQILRGVLSPRELEMPSR 424
+ Q+++HL E++N DS ++QQ+ICYD+ W+ISVSWG+ VQ+ + ++
Sbjct: 1267TTTQALKHLFEAVNVDSQRMLQQTICYDRWFSWTISVSWGYAVQVFPNHMFLPDVVNARE 1446
Query: 425 TFLNWYR-RADYTAYAFNTRPVAKHPCQKPFVYYMSKTHFDTASRQIVGVYSRDQTKS-P 482
TF W + AY FNT+PV PC++ ++Y FD+AS G+ + +S
Sbjct: 1447TFKQWKKGNMLAKAYTFNTKPVHPDPCKRSTIFY-----FDSASSGKDGIINSYYKRSFQ 1611
Query: 483 FCRWRMESPEKITSI-VVTKRRD 504
C + S +K+ I VVT + D
Sbjct: 1612NCSKDLVSXKKLEVIKVVTHKLD 1680
>BI272054 similar to GP|15529153|gb AT4g23490/F16G20_190 {Arabidopsis
thaliana}, partial (42%)
Length = 715
Score = 315 bits (806), Expect = 4e-86
Identities = 154/232 (66%), Positives = 178/232 (76%), Gaps = 1/232 (0%)
Frame = +3
Query: 132 TELKHIVFGIAASSNLWNTRKEYIKIWWRPKQTRGVVWLDQRVSTQRNEG-LPDIRISDD 190
T L+H+VFGIAAS+ LW RK YIK+W+R K+ RGVVWLD +V TQ+NE LP +RIS D
Sbjct: 12 TVLRHVVFGIAASAKLWEQRKNYIKLWYRAKEMRGVVWLDNKVKTQKNESRLPPVRISGD 191
Query: 191 TSKFRYTNRQGQRSALRISRVVTETLKLGLKDVRWFVMGDDDTVFVVDNVVRILSKYDHR 250
TSKF Y N+QG RSA+RISR+V+ETL+LG+KDVRWFVMGDDDTVFV +N++RIL KYDH
Sbjct: 192 TSKFAYKNKQGHRSAIRISRIVSETLRLGMKDVRWFVMGDDDTVFVTENLIRILRKYDHN 371
Query: 251 HFYYVGSSSESHVQNIHFSYAMAYGGGGFAISYPLAVELATMQDRCIQRYPALYGSDDRM 310
FYY+GS SESH+QNI FSY MAYGGGGFAISYPLA L MQDRCIQRYP LYGS+DRM
Sbjct: 372 QFYYIGSLSESHLQNIFFSYGMAYGGGGFAISYPLAKALHKMQDRCIQRYPGLYGSNDRM 551
Query: 311 QACMAELGVPLTKEAGFHQYDVYGDLLGLLGAHPVAPLVSLHHLDVVQPIFP 362
ACMAELGVPLTKE G + + HLDVV+PIFP
Sbjct: 552 HACMAELGVPLTKETGVSPV*CVWEPARXSCIASXDSISVTAHLDVVEPIFP 707
>BI310191 similar to GP|15529153|gb AT4g23490/F16G20_190 {Arabidopsis
thaliana}, partial (35%)
Length = 687
Score = 249 bits (637), Expect = 1e-66
Identities = 110/180 (61%), Positives = 140/180 (77%)
Frame = +3
Query: 331 DVYGDLLGLLGAHPVAPLVSLHHLDVVQPIFPSMSRAQSIRHLMESINQDSSGIMQQSIC 390
DVYG+L GLL AHPV PLVSLHHLDVV+PIFP+ +R ++++ L + DS+G++QQSIC
Sbjct: 3 DVYGNLFGLLAAHPVTPLVSLHHLDVVEPIFPNATRVEALQRLTIPMKLDSAGLIQQSIC 182
Query: 391 YDKNRFWSISVSWGFMVQILRGVLSPRELEMPSRTFLNWYRRADYTAYAFNTRPVAKHPC 450
YDK + W+ISVSWGF VQI RG+ SPRE+EMPSRTFLNWYRRADYTAYAFNTRPV +HPC
Sbjct: 183 YDKEKRWTISVSWGFAVQIFRGIFSPREIEMPSRTFLNWYRRADYTAYAFNTRPVTRHPC 362
Query: 451 QKPFVYYMSKTHFDTASRQIVGVYSRDQTKSPFCRWRMESPEKITSIVVTKRRDPLRWKK 510
QKPFV+Y+SK F++ +Q V Y + + P CRW+M +P + +VV K+ DP W +
Sbjct: 363 QKPFVFYLSKAKFNSTIQQTVSEYEKHRVPHPECRWKMANPSALDKVVVYKKPDPHLWDR 542
>TC91618 similar to PIR|C86456|C86456 unknown protein [imported] -
Arabidopsis thaliana, partial (44%)
Length = 978
Score = 182 bits (462), Expect = 3e-46
Identities = 87/208 (41%), Positives = 127/208 (60%)
Frame = +3
Query: 278 GFAISYPLAVELATMQDRCIQRYPALYGSDDRMQACMAELGVPLTKEAGFHQYDVYGDLL 337
G AIS PLA L + D CI+RYP LYGSDDR+ AC+ ELG+PLT+E GFHQ+D+ GD
Sbjct: 3 GIAISRPLAKALYEILDECIERYPGLYGSDDRLHACITELGIPLTREHGFHQWDIKGDAH 182
Query: 338 GLLGAHPVAPLVSLHHLDVVQPIFPSMSRAQSIRHLMESINQDSSGIMQQSICYDKNRFW 397
GLL +HP+AP VS+HH++ V P +P +S S++ +++ + +Q+SICYD +R
Sbjct: 183 GLLSSHPIAPFVSIHHVEAVNPFYPGLSSLDSLKLFTKAMRAEPRSFLQRSICYDHSRHL 362
Query: 398 SISVSWGFMVQILRGVLSPRELEMPSRTFLNWYRRADYTAYAFNTRPVAKHPCQKPFVYY 457
+ SVS G+ +Q+L ++ PRELE RT+ W + + F+ R K C+KP ++
Sbjct: 363 TFSVSLGYAIQVLPNIVFPRELERSERTYSAWNGISQRNEFDFDARDPHKSVCKKPIRFF 542
Query: 458 MSKTHFDTASRQIVGVYSRDQTKSPFCR 485
+ T G Y R++ K F R
Sbjct: 543 LKDT--GREGNASWGSYVRNKDKDDFKR 620
>TC92846 similar to GP|9758054|dbj|BAB08517.1
gene_id:MYC6.16~pir||T13026~strong similarity to unknown
protein {Arabidopsis thaliana}, partial (22%)
Length = 656
Score = 180 bits (456), Expect = 1e-45
Identities = 82/156 (52%), Positives = 114/156 (72%), Gaps = 10/156 (6%)
Frame = +1
Query: 112 ENKSPIVVRLT--------PEQMAQRQDTELKHIVFGIAASSNLWNTRKEYIKIWWRPKQ 163
+N+ PI+ T ++ ++ T + HIVFGI AS+ LW RKEYIK+WW+P Q
Sbjct: 148 QNQKPIIHSHTNLPTQKPFEDEEKKQTKTNISHIVFGIGASAKLWKKRKEYIKLWWKPNQ 327
Query: 164 TRGVVWLDQRVSTQRNEG--LPDIRISDDTSKFRYTNRQGQRSALRISRVVTETLKLGLK 221
RG+VWL+Q+V N+ LP ++IS+DTSKF+Y N +G RSA+RISR+V+ET++LG++
Sbjct: 328 MRGIVWLEQKVKIDSNDEDLLPLLKISEDTSKFKYKNSKGHRSAIRISRIVSETVRLGME 507
Query: 222 DVRWFVMGDDDTVFVVDNVVRILSKYDHRHFYYVGS 257
+VRWFVMGDDDT FV +N+V +L KYDH FYY+GS
Sbjct: 508 NVRWFVMGDDDTFFVAENLVNVLKKYDHNQFYYIGS 615
>TC90817 similar to PIR|E71416|E71416 hypothetical protein - Arabidopsis
thaliana, partial (24%)
Length = 816
Score = 149 bits (376), Expect(2) = 7e-42
Identities = 75/146 (51%), Positives = 98/146 (66%)
Frame = +1
Query: 162 KQTRGVVWLDQRVSTQRNEGLPDIRISDDTSKFRYTNRQGQRSALRISRVVTETLKLGLK 221
K GV+ ++ P + IS D S F YT + G RSA+R++RVV E +
Sbjct: 376 KNQHGVLAFLDAPPRNSSDESPPVVISGDVSGFPYTLQGGLRSAIRVARVVKEAVDRNET 555
Query: 222 DVRWFVMGDDDTVFVVDNVVRILSKYDHRHFYYVGSSSESHVQNIHFSYAMAYGGGGFAI 281
DVRWFV GDDDTVF V+NVV+ LSKYDH ++YVGS+SES+ QN+ +S+ MA+GGGGFAI
Sbjct: 556 DVRWFVFGDDDTVFFVENVVKTLSKYDHERWFYVGSNSESYEQNLMYSFEMAFGGGGFAI 735
Query: 282 SYPLAVELATMQDRCIQRYPALYGSD 307
+Y L LA + D C++RY LYGSD
Sbjct: 736 TYSLGKVLARVLDSCLRRYGFLYGSD 813
Score = 40.0 bits (92), Expect(2) = 7e-42
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 115 SPIVVRLTPEQMAQR-QDTELKHIVFGIAASSNLWNTRKEYIKIWWRPKQTR 165
+P L P + R T +H++F +A+SS W R+ Y+ IW+ K TR
Sbjct: 234 APYSNTLAPSSVVSRLTSTTRRHVLFAVASSSLSWPHRQSYVNIWYNKKSTR 389
>CA917904 homologue to GP|19717681|gb| arsenite transport subunit B
{Dictyostelium discoideum}, partial (2%)
Length = 750
Score = 59.7 bits (143), Expect = 3e-09
Identities = 22/42 (52%), Positives = 29/42 (68%)
Frame = +1
Query: 132 TELKHIVFGIAASSNLWNTRKEYIKIWWRPKQTRGVVWLDQR 173
T + HIVFGIA SS +W++R Y K+WW P RG VW D++
Sbjct: 565 TNISHIVFGIAGSSKMWHSRSNYSKLWWNPTACRGFVWFDKK 690
>TC77387 similar to GP|15983396|gb|AAL11566.1 At1g51440/F5D21_19
{Arabidopsis thaliana}, partial (75%)
Length = 1793
Score = 36.6 bits (83), Expect = 0.026
Identities = 15/31 (48%), Positives = 23/31 (73%)
Frame = +3
Query: 87 QMQDETEKETEQDEDDFREGEGEEQENKSPI 117
Q+ +E E+E E+DED+ E E EE+E +SP+
Sbjct: 315 QLHEEEEEEEEEDEDEEEEEEEEEEEEESPL 407
>BE248780 similar to GP|5929884|gb|A nucleolin-related protein NRP {Rattus
norvegicus}, partial (4%)
Length = 561
Score = 35.8 bits (81), Expect = 0.044
Identities = 26/120 (21%), Positives = 52/120 (42%), Gaps = 4/120 (3%)
Frame = +2
Query: 46 PMTTTTLDDTTQDDVHMTSYNISSTSDKNIE----HKVLPIENKEQMQDETEKETEQDED 101
P+ T + + H Y SS D +I+ H++ E D+++ + + D+D
Sbjct: 218 PIFTNSKPTSAFGQWHHGRYFSSSKQDDHIKEGGTHEI------EDEDDDSDGDDDDDDD 379
Query: 102 DFREGEGEEQENKSPIVVRLTPEQMAQRQDTELKHIVFGIAASSNLWNTRKEYIKIWWRP 161
D+ E EG+ ++ V + +++ ++ E A + +WNT+ WW P
Sbjct: 380 DYDEEEGDYEDEDDDTVAVSSRKKVYTEEEKE--------AEAEAIWNTK------WWGP 517
>CB892282 weakly similar to GP|20804875|dbj putative serine/threonine kinase
{Oryza sativa (japonica cultivar-group)}, partial (6%)
Length = 820
Score = 34.7 bits (78), Expect = 0.097
Identities = 22/96 (22%), Positives = 44/96 (44%)
Frame = +2
Query: 121 LTPEQMAQRQDTELKHIVFGIAASSNLWNTRKEYIKIWWRPKQTRGVVWLDQRVSTQRNE 180
+ P Q Q DT + A N +++++Y IW++ R +VW+ R +T
Sbjct: 50 IAPNQFMQYGDTLVSAAGMYEAGFFNFGDSQRQYFGIWYKNISPRTIVWVANR-NTPTQN 226
Query: 181 GLPDIRISDDTSKFRYTNRQGQRSALRISRVVTETL 216
++++D S +G + ISR+V +++
Sbjct: 227 STAMLKLNDQGSLVIVDGSKGIIWSSNISRIVVKSV 334
>TC78476 homologue to SP|O22437|CHLD_PEA Magnesium-chelatase subunit chlD
chloroplast precursor (Mg- protoporphyrin IX chelatase),
partial (68%)
Length = 1596
Score = 34.3 bits (77), Expect = 0.13
Identities = 13/34 (38%), Positives = 24/34 (70%)
Frame = +2
Query: 83 ENKEQMQDETEKETEQDEDDFREGEGEEQENKSP 116
E+ E+ +E +KE E++E+D ++ E EEQ+ + P
Sbjct: 530 ESNEEQNEEEDKEEEEEEEDDKDEEKEEQQEQLP 631
>TC77638 similar to GP|20161455|dbj|BAB90379. ankyrin-like protein {Oryza
sativa (japonica cultivar-group)}, partial (62%)
Length = 2345
Score = 33.9 bits (76), Expect = 0.17
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 58 DDVHMTSYNISSTSDKNIEHKVLPIENKEQMQDETEKETEQDEDDFREGE 107
D+ S + + T+D N+E KV +NKE ++ +EK T+ + D E
Sbjct: 793 DESEKKSSDSNETTDSNVEEKVEQSQNKESDENASEKNTDDNAKDQSSNE 942
>BG586056
Length = 800
Score = 31.6 bits (70), Expect = 0.82
Identities = 22/58 (37%), Positives = 28/58 (47%), Gaps = 11/58 (18%)
Frame = +1
Query: 127 AQRQDTELKH------IVFGIAASSNLWNTRK-----EYIKIWWRPKQTRGVVWLDQR 173
A R+ T+LK+ I+F I + TR E KIWWR KQ RG + QR
Sbjct: 232 ATRKCTDLKNHHKNRTIIFAIGFTVTDKQTRSRTEITELYKIWWRKKQRRGTIRKMQR 405
>AW690594 similar to GP|23498163|emb hypothetical protein {Plasmodium
falciparum 3D7}, partial (10%)
Length = 633
Score = 31.6 bits (70), Expect = 0.82
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 83 ENKEQMQDETEKETEQDEDDFREGEGEEQENKSPI 117
E+ ++ ++E E+E E++EDD EGE +E + S +
Sbjct: 168 EHDDEEEEEEEEEEEEEEDDDEEGEEDEIDRISTL 272
Score = 28.1 bits (61), Expect = 9.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 62 MTSYNISSTSDKNIEHKVLPIENKEQMQDETEKETEQDEDDFREGEGEEQENK 114
MT S K EH E + + +++ E E+DE D E E EE+E +
Sbjct: 6 MTMAESSWKRRKVEEHNEEEDEGEVEEEEDEHDEEEEDEHDEEEEEEEEEEEE 164
>AJ388952 similar to PIR|T04526|T045 hypothetical protein F16A16.160 -
Arabidopsis thaliana, partial (24%)
Length = 591
Score = 30.4 bits (67), Expect = 1.8
Identities = 12/34 (35%), Positives = 26/34 (76%)
Frame = -3
Query: 80 LPIENKEQMQDETEKETEQDEDDFREGEGEEQEN 113
L + ++ + ++E E+E E++E++ EGEG+E+E+
Sbjct: 304 LMVSSRREPKEEEEEEEEEEEEE--EGEGDEEED 209
>TC87261 similar to GP|16648718|gb|AAL25551.1 AT5g64130/MHJ24_11
{Arabidopsis thaliana}, partial (72%)
Length = 929
Score = 30.0 bits (66), Expect = 2.4
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Frame = +1
Query: 22 ILITIVLYILYS--CNILLFNNEQECPMT-TTTLDDTTQDDVHMTSYNISSTSDKNIEHK 78
I+I+I+ L S + F E+E M+ ++D + +VH S N + SDK+ ++
Sbjct: 64 IIISIISITLRSPISTLYFFQYERE*TMSEANNVEDVKKQEVHEDSSN-NQASDKDANNE 240
Query: 79 VLPIENKEQMQDETEKETEQDEDDFREGEGEEQENKSPIV 118
+P +Q+ED R+ G + K+P++
Sbjct: 241 SMP-------------SPQQEEDAVRKKYGGKLPKKAPLI 321
>TC86034 similar to GP|6815067|dbj|BAA90354.1 ESTs AU082210(C53655)
AU056546(S20671) AU056545(S20671) correspond to a
region of the predicted, partial (42%)
Length = 2412
Score = 30.0 bits (66), Expect = 2.4
Identities = 17/67 (25%), Positives = 33/67 (48%), Gaps = 5/67 (7%)
Frame = +3
Query: 53 DDTTQDDVHMTSYNISSTSDKNIEHKVLPIE-----NKEQMQDETEKETEQDEDDFREGE 107
+ T Q + ++ E + PIE N+ + ++E E+E ++E+D ++GE
Sbjct: 135 EPTKQAEPEPQQEEVAEEEPTTQEEENTPIEEDQPQNEGEGEEEPEEEVAEEEEDDQQGE 314
Query: 108 GEEQENK 114
E EN+
Sbjct: 315 DETLENQ 335
>BQ143830
Length = 308
Score = 29.6 bits (65), Expect = 3.1
Identities = 12/31 (38%), Positives = 20/31 (63%)
Frame = -1
Query: 6 HQRMIHTGSRSITTWLILITIVLYILYSCNI 36
H +HT S S++ + IL ++++ILY C I
Sbjct: 290 HTLKVHTNSISLSPFYILYVLLVFILY*CGI 198
>TC80836 similar to GP|23499268|emb|CAD51348. hypothetical protein {Plasmodium
falciparum 3D7}, partial (1%)
Length = 1193
Score = 29.6 bits (65), Expect = 3.1
Identities = 17/45 (37%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
Frame = +1
Query: 69 STSDKNIEHKVLP-IENKEQMQDETEKETEQDEDDFREGEGEEQE 112
+T K EHK LP E K ++ + + + DD E +GEEQE
Sbjct: 958 NTHPKEEEHKTLPDSEAKLSFINQEIGDDDDESDDDDESDGEEQE 1092
>TC80981 similar to GP|8698730|gb|AAF78488.1| ESTs gb|Z18526 gb|AI994480
gb|T44186 gb|Z30806 come from this gene. {Arabidopsis
thaliana}, partial (37%)
Length = 699
Score = 29.6 bits (65), Expect = 3.1
Identities = 21/83 (25%), Positives = 35/83 (41%), Gaps = 3/83 (3%)
Frame = +3
Query: 41 NEQECPMTTTTLDDTTQDDVHMTSYNISSTSDKNIEHKV-LP--IENKEQMQDETEKETE 97
N E P T ++ H+ + N TS ++ + LP + + E E
Sbjct: 69 NNHEEPTFPTKRKPDQEETHHLPNKNPKLTSTTTVDQETELPTTVNSSSDAVPNNEPENN 248
Query: 98 QDEDDFREGEGEEQENKSPIVVR 120
D+DD + E EE ++ P+V R
Sbjct: 249 TDDDD-EDDEDEENSDEEPVVDR 314
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.322 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,371,915
Number of Sequences: 36976
Number of extensions: 263682
Number of successful extensions: 1854
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1829
length of query: 548
length of database: 9,014,727
effective HSP length: 101
effective length of query: 447
effective length of database: 5,280,151
effective search space: 2360227497
effective search space used: 2360227497
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Medicago: description of AC135230.10