TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC135101.6 + phase: 0 /pseudo
         (1281 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {V...   155  7e-38
TC93065                                                               101  2e-21
TC81230                                                                38  0.029
AJ502495 weakly similar to GP|18071369|g putative gag-pol polypr...    37  0.049
AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {V...    37  0.064
TC91462 similar to GP|7769858|gb|AAF69536.1| F12M16.20 {Arabidop...    30  6.0

>BI262818 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
           vinifera}, partial (24%)
          Length = 615

 Score =  155 bits (393), Expect = 7e-38
 Identities = 74/111 (66%), Positives = 91/111 (81%), Gaps = 2/111 (1%)
 Frame = +1

Query: 5   APPL--FDGNNYELWAVKIEAYLEALDVWEAIEEDYEVPPLPNNPTMAQLKYHKERKTKK 62
           APPL  FDG NY +WA +IEAYLEA D+WEA+EEDYEV PL +NPTMAQ+K HKERKT+K
Sbjct: 166 APPLPVFDGENYHIWAARIEAYLEANDLWEAVEEDYEVLPLSDNPTMAQIKNHKERKTRK 345

Query: 63  AKAKSCLFAGVLETVFTRIMTLKTPKAIWDYLKEEYAGDERIRSIQMLNLM 113
           +KA++ LFA V E +FTRIMT+K+   IW++LK EY GDERIR +Q LNL+
Sbjct: 346 SKARATLFAAVSEEIFTRIMTIKSAFEIWNFLKTEYEGDERIRGMQALNLI 498


>TC93065 
          Length = 783

 Score =  101 bits (252), Expect = 2e-21
 Identities = 82/263 (31%), Positives = 125/263 (47%), Gaps = 10/263 (3%)
 Frame = +3

Query: 41  PPLPNNPTMAQLKYHKERKTKKAKAKSCLFAGVLETVFTRIMTLKTPKAIWDYLKEEYAG 100
           PPLPNNPT+AQ++ H +   K+ +A + + A + + +F +I+ L+  K  W  L EEY G
Sbjct: 3   PPLPNNPTLAQIRNHSDEVAKEGRALAIIHAALHDDIFIKILNLEIAKEAWSKLMEEYQG 182

Query: 101 DERIRSIQMLNL-MSLSCRK*KSLRQSKNTQTNCCLLQTRLDYLALDLLIPEL*NFFWL- 158
            ER + +++LNL  SL   K*K L+  ++  T    L  + D      +I EL   +W  
Sbjct: 183 SERTKKMKVLNLEESLKH*K*KKLKLLESFLTEFLKLLHKSDCWEKISVIKELWKKYWCV 362

Query: 159 --QCLKDMRHL*PV*RTQRILVRSLWQKSYMPCKPKNNEGL*GKIVLLKVLYQPRANNHT 216
             +CLK   HL    +  RI ++S  Q   M CK  N E L*G   +LKV + P      
Sbjct: 363 FQRCLKQKFHL---LKKIRIFLKSQLQSLLMLCKLLNKEDL*GWKKMLKVPFWP------ 515

Query: 217 L*RVIQQVVNTTKERVR------RKVFHLVNTAEKWVTHHLNVGEGQMQSAASAMK*VMK 270
                     TTK +++      ++ FH V+ A++ +     VG GQ  +       VM 
Sbjct: 516 ----------TTKAKIKALKVLGKRSFHRVHIAKRILI*TSFVGIGQELNVELVTNLVMW 665

Query: 271 M*FVKQKSNKLQLKQKMYSKRRK 293
             F K K      K ++ S  +K
Sbjct: 666 RRFAKTKQTSRNKKPELLSTTKK 734


>TC81230 
          Length = 958

 Score = 37.7 bits (86), Expect = 0.029
 Identities = 25/116 (21%), Positives = 47/116 (39%), Gaps = 4/116 (3%)
 Frame = +1

Query: 3   KVAPPL---FDGNNYELWAVKIEAYLEALDVWEAIEEDYEVPPLPNNPTMAQLKYHKERK 59
           +V PP+    +G+NY  WA  +  +L+   +W  +  D + P    + T        E  
Sbjct: 211 EVTPPISIILNGSNYNHWAESMCGFLKGRRLWRYVTGDKKCPTKGKDDTADAFADKLEEW 390

Query: 60  TKKAKAKSCLFAGV-LETVFTRIMTLKTPKAIWDYLKEEYAGDERIRSIQMLNLMS 114
             K       F    + ++  +    +  K +WD+LK+ Y   +     Q+L  +S
Sbjct: 391 DSKNHQIITWFRNTSIPSIHMQFGRFENAKEVWDHLKQRYTISDLSHQYQLLKDLS 558


>AJ502495 weakly similar to GP|18071369|g putative gag-pol polyprotein {Oryza
            sativa}, partial (9%)
          Length = 542

 Score = 37.0 bits (84), Expect = 0.049
 Identities = 35/101 (34%), Positives = 51/101 (49%)
 Frame = +3

Query: 1135 VIGQVAWMI*RVLQGTVST*VQVFSLGVQRNKRL*LSQQQKLSL*LQQQL*IKLFG*GIS 1194
            VIGQ      +  QGT   *  V   G++RN    L  QQK ++* Q  + +K  G*   
Sbjct: 3    VIGQEIQKQEKARQGTRFI*EPVQYHGLRRNNLWSLFPQQKQNI*HQLVVLLKQCG*EEF 182

Query: 1195 *QIWA*SKSKVHRFLLIIKQLFPYHIIQYFMGRPSTLMSSY 1235
            *+    S++ + R+++I  Q      IQ+FM  PS L SS+
Sbjct: 183  *K*CIMSRTLLQRYIVITSQQLH*AKIQFFMDGPSILTSSF 305


>AJ499215 weakly similar to GP|6642775|gb| gag-pol polyprotein {Vitis
           vinifera}, partial (18%)
          Length = 567

 Score = 36.6 bits (83), Expect = 0.064
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
 Frame = +1

Query: 324 IKLYSRIWRTLKSNGSELEMVYIFQLKAREQ*L*QATQVRKISLMFYMCLKLIRTCLVLD 383
           I+ YS+    +     E  MV+  + KA  Q   + TQV     MFYM L LI+   V  
Sbjct: 148 IETYSKSSTKVLFPKLEC*MVHTLK*KALGQF*LKVTQVINKFRMFYMLLNLIKVF*VFL 327

Query: 384 NYLKKGSKLFLKIRIV*LRTQQAKKCSK---------*K*RARIFHLIQ*RRSNLLFQSQ 434
           +  +K +K  L +R V*L+ +  KKC +         * *R  I  +   RR N++ +  
Sbjct: 328 SC*RKATKCCLNMRSV*LKIKTIKKCLELR*KPGNLF*I*RTDILLMKMKRRKNIISKKI 507

Query: 435 LAQLIFGTN 443
           +   +F  N
Sbjct: 508 IMMHVF*RN 534


>TC91462 similar to GP|7769858|gb|AAF69536.1| F12M16.20 {Arabidopsis
          thaliana}, partial (21%)
          Length = 1134

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 18/55 (32%), Positives = 30/55 (53%), Gaps = 5/55 (9%)
 Frame = +3

Query: 28 LDVWEAIEEDYEV--PPLPNNPTMAQLKYHKERKTKKAKAK---SCLFAGVLETV 77
          L+ WE   +DYEV    LPN+  +A+  +H +   KK++ +   +  F G +E V
Sbjct: 15 LERWEEAVKDYEVLRKELPNDNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEQV 179


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.361    0.159    0.550 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,140,062
Number of Sequences: 36976
Number of extensions: 599899
Number of successful extensions: 6326
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 4288
Number of HSP's gapped (non-prelim): 2398
length of query: 1281
length of database: 9,014,727
effective HSP length: 107
effective length of query: 1174
effective length of database: 5,058,295
effective search space: 5938438330
effective search space used: 5938438330
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 64 (29.3 bits)